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[ALS-6006] - Update annotated VCFs description in Data Types info modal
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Luke Sikina authored and Luke-Sikina committed Jul 9, 2024
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11 changes: 6 additions & 5 deletions ui/src/main/webapp/picsureui/requestSearch/dataTypesHelp.hbs
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<b>Phenotypic Data: </b>Clinical data, electronic health record information
</li>
<li>
<b>Annotated variant data for selected genes: </b>The annotated variant data is sourced from the combined,
annotated VCF and represents the patient cohort selected by the applied genomic and clinical filters. The
original sample VCFs have been annotated using the Ensembl Variant Effect Predictor (VEP) to provide
additional annotations and determine the effects of each variant. Modifier variants have been removed.
To learn more visit the <a href="https://pic-sure.gitbook.io/genomic-information-commons/pic-sure-features/variant-explorer">User Guide</a>.
<b>Annotated variant data for selected genes: </b>The annotated genomic variants are sourced from the
combined and annotated VCF files, representing the variant set from patient cohort as defined by the
applied genomic and clinical filters in Query Builder. The original VCF files have been annotated using the
Ensembl Variant Effect Predictor (VEP), offering a set of variant-level annotations including the calculated
functional effect of each variant. To learn more, please visit
the <a href="https://pic-sure.gitbook.io/genomic-information-commons/pic-sure-features/variant-explorer">User Guide</a>.
</li>
</ul>
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