hpcugent · boegel · Sep 1, 2023 · Aug 18, 2023 · Aug 18, 2023 · Aug 23, 2023
diff --git a/.github/workflows/script_module_list.yml b/.github/workflows/script_module_list.yml
@@ -27,7 +27,7 @@ jobs:
         uses: py-actions/flake8@v2
         with:
           max-line-length: "120"
-          path: "scripts/module_overview"
+          path: "scripts/available_software"
 
   pytest-tests:
     runs-on: ubuntu-20.04
@@ -39,11 +39,11 @@ jobs:
           python-version: '3.6'
       - name: Install dependencies
         run: |
-          cd scripts/module_overview
+          cd scripts/available_software
           python -m pip install --upgrade pip
           pip install -r requirements.txt
           pip install -r requirements_tests.txt
       - name: Test with pytest
         run: |
-          cd scripts/module_overview
+          cd scripts/available_software
           ./test.sh
diff --git a/config/templates/hpc.template b/config/templates/hpc.template
@@ -147,11 +147,16 @@ theme:
         name: Switch to light mode 
 
 extra_javascript:
+{%- if site == 'Gent' %}
     - https://code.jquery.com/jquery-3.7.0.min.js
     - https://cdn.datatables.net/1.13.6/js/jquery.dataTables.min.js
-    - javascripts/populate_overview.js
+    - available_software/javascripts/populate_overview.js
+{%- endif %}
+
 extra_css:
+{%- if site == 'Gent' %}
     - https://cdn.datatables.net/1.13.6/css/jquery.dataTables.min.css
+{%- endif %}
 
 extra:
   OS: {{ os }}

diff --git a/mkdocs/docs/HPC/data/json_data.json b/mkdocs/docs/HPC/data/json_data.json
diff --git a/mkdocs/docs/HPC/only/gent/available_software/data/00_README.TXT b/mkdocs/docs/HPC/only/gent/available_software/data/00_README.TXT
@@ -0,0 +1,6 @@
+WARNING
+WARNING
+WARNING
+
+The files in this directory were automatically generated by the available_software.py script!!!
+This script can be found at /scripts/available_software/available_software.py.
diff --git a/mkdocs/docs/HPC/only/gent/available_software/data/json_data.json b/mkdocs/docs/HPC/only/gent/available_software/data/json_data.json
diff --git a/mkdocs/docs/HPC/only/gent/available_software/data/json_data_detail.json b/mkdocs/docs/HPC/only/gent/available_software/data/json_data_detail.json
diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/00_README.TXT b/mkdocs/docs/HPC/only/gent/available_software/detail/00_README.TXT
@@ -0,0 +1,6 @@
+WARNING
+WARNING
+WARNING
+
+The files in this directory were automatically generated by the available_software.py script!!!
+This script can be found at /scripts/available_software/available_software.py.
diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/ABAQUS.md b/mkdocs/docs/HPC/only/gent/available_software/detail/ABAQUS.md
@@ -0,0 +1,27 @@
+---
+hide:
+  - toc
+---
+
+ABAQUS
+======
+
+# Available modules
+
+
+The overview below shows which ABAQUS installations are available per HPC-UGent Tier-2cluster, ordered based on software version (new to old).
+
+To start using ABAQUS, load one of these modules using a `module load` command like:
+
+```shell
+module load ABAQUS/2023
+```
+
+*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)*  
+
+| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini|
+| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
+|ABAQUS/2023|x|x|x|x|x|x|x|x|
+|ABAQUS/2022-hotfix-2214|-|x|x|-|x|x|x|x|
+|ABAQUS/2022|-|x|x|-|x|x|x|x|
+|ABAQUS/2021-hotfix-2132|-|x|x|-|x|x|x|x|
diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/ABINIT.md b/mkdocs/docs/HPC/only/gent/available_software/detail/ABINIT.md
@@ -0,0 +1,26 @@
+---
+hide:
+  - toc
+---
+
+ABINIT
+======
+
+# Available modules
+
+
+The overview below shows which ABINIT installations are available per HPC-UGent Tier-2cluster, ordered based on software version (new to old).
+
+To start using ABINIT, load one of these modules using a `module load` command like:
+
+```shell
+module load ABINIT/9.10.3-intel-2022a
+```
+
+*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)*  
+
+| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini|
+| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
+|ABINIT/9.10.3-intel-2022a|-|-|x|-|x|x|x|x|
+|ABINIT/9.4.1-intel-2020b|-|x|x|x|x|x|x|x|
+|ABINIT/9.2.1-intel-2020a|-|x|x|-|x|x|x|x|
diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/ABRA2.md b/mkdocs/docs/HPC/only/gent/available_software/detail/ABRA2.md
@@ -0,0 +1,26 @@
+---
+hide:
+  - toc
+---
+
+ABRA2
+=====
+
+# Available modules
+
+
+The overview below shows which ABRA2 installations are available per HPC-UGent Tier-2cluster, ordered based on software version (new to old).
+
+To start using ABRA2, load one of these modules using a `module load` command like:
+
+```shell
+module load ABRA2/2.23-GCC-10.2.0
+```
+
+*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)*  
+
+| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini|
+| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
+|ABRA2/2.23-GCC-10.2.0|-|x|x|x|x|x|x|x|
+|ABRA2/2.23-GCC-9.3.0|-|x|x|-|x|x|x|x|
+|ABRA2/2.22-iccifort-2019.5.281|-|x|-|-|-|-|-|-|
diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/ABRicate.md b/mkdocs/docs/HPC/only/gent/available_software/detail/ABRicate.md
@@ -0,0 +1,24 @@
+---
+hide:
+  - toc
+---
+
+ABRicate
+========
+
+# Available modules
+
+
+The overview below shows which ABRicate installations are available per HPC-UGent Tier-2cluster, ordered based on software version (new to old).
+
+To start using ABRicate, load one of these modules using a `module load` command like:
+
+```shell
+module load ABRicate/0.9.9-gompi-2019b
+```
+
+*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)*  
+
+| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini|
+| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
+|ABRicate/0.9.9-gompi-2019b|-|x|x|-|x|x|-|x|
diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/ABySS.md b/mkdocs/docs/HPC/only/gent/available_software/detail/ABySS.md
@@ -0,0 +1,24 @@
+---
+hide:
+  - toc
+---
+
+ABySS
+=====
+
+# Available modules
+
+
+The overview below shows which ABySS installations are available per HPC-UGent Tier-2cluster, ordered based on software version (new to old).
+
+To start using ABySS, load one of these modules using a `module load` command like:
+
+```shell
+module load ABySS/2.1.5-foss-2019b
+```
+
+*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)*  
+
+| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini|
+| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
+|ABySS/2.1.5-foss-2019b|-|x|x|-|x|x|-|x|
diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/ACTC.md b/mkdocs/docs/HPC/only/gent/available_software/detail/ACTC.md
@@ -0,0 +1,24 @@
+---
+hide:
+  - toc
+---
+
+ACTC
+====
+
+# Available modules
+
+
+The overview below shows which ACTC installations are available per HPC-UGent Tier-2cluster, ordered based on software version (new to old).
+
+To start using ACTC, load one of these modules using a `module load` command like:
+
+```shell
+module load ACTC/1.1-GCCcore-10.2.0
+```
+
+*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)*  
+
+| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini|
+| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
+|ACTC/1.1-GCCcore-10.2.0|-|x|x|x|x|x|x|x|
diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/ADMIXTURE.md b/mkdocs/docs/HPC/only/gent/available_software/detail/ADMIXTURE.md
@@ -0,0 +1,24 @@
+---
+hide:
+  - toc
+---
+
+ADMIXTURE
+=========
+
+# Available modules
+
+
+The overview below shows which ADMIXTURE installations are available per HPC-UGent Tier-2cluster, ordered based on software version (new to old).
+
+To start using ADMIXTURE, load one of these modules using a `module load` command like:
+
+```shell
+module load ADMIXTURE/1.3.0
+```
+
+*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)*  
+
+| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini|
+| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
+|ADMIXTURE/1.3.0|-|x|x|-|x|x|x|x|
diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/AMAPVox.md b/mkdocs/docs/HPC/only/gent/available_software/detail/AMAPVox.md
@@ -0,0 +1,24 @@
+---
+hide:
+  - toc
+---
+
+AMAPVox
+=======
+
+# Available modules
+
+
+The overview below shows which AMAPVox installations are available per HPC-UGent Tier-2cluster, ordered based on software version (new to old).
+
+To start using AMAPVox, load one of these modules using a `module load` command like:
+
+```shell
+module load AMAPVox/1.9.4-Java-11
+```
+
+*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)*  
+
+| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini|
+| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
+|AMAPVox/1.9.4-Java-11|x|x|x|-|x|x|x|x|
diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/AMOS.md b/mkdocs/docs/HPC/only/gent/available_software/detail/AMOS.md
@@ -0,0 +1,24 @@
+---
+hide:
+  - toc
+---
+
+AMOS
+====
+
+# Available modules
+
+
+The overview below shows which AMOS installations are available per HPC-UGent Tier-2cluster, ordered based on software version (new to old).
+
+To start using AMOS, load one of these modules using a `module load` command like:
+
+```shell
+module load AMOS/3.1.0-foss-2021b
+```
+
+*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)*  
+
+| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini|
+| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
+|AMOS/3.1.0-foss-2021b|x|x|x|-|x|x|x|x|
diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/AMPtk.md b/mkdocs/docs/HPC/only/gent/available_software/detail/AMPtk.md
@@ -0,0 +1,24 @@
+---
+hide:
+  - toc
+---
+
+AMPtk
+=====
+
+# Available modules
+
+
+The overview below shows which AMPtk installations are available per HPC-UGent Tier-2cluster, ordered based on software version (new to old).
+
+To start using AMPtk, load one of these modules using a `module load` command like:
+
+```shell
+module load AMPtk/1.5.4-foss-2021b
+```
+
+*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)*  
+
+| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini|
+| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
+|AMPtk/1.5.4-foss-2021b|x|x|x|-|x|x|x|x|
diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/ANTLR.md b/mkdocs/docs/HPC/only/gent/available_software/detail/ANTLR.md
@@ -0,0 +1,25 @@
+---
+hide:
+  - toc
+---
+
+ANTLR
+=====
+
+# Available modules
+
+
+The overview below shows which ANTLR installations are available per HPC-UGent Tier-2cluster, ordered based on software version (new to old).
+
+To start using ANTLR, load one of these modules using a `module load` command like:
+
+```shell
+module load ANTLR/2.7.7-GCCcore-10.3.0-Java-11
+```
+
+*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)*  
+
+| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini|
+| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
+|ANTLR/2.7.7-GCCcore-10.3.0-Java-11|-|x|x|-|x|x|x|x|
+|ANTLR/2.7.7-GCCcore-8.3.0-Java-11|-|x|x|-|x|x|x|x|
diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/ANTs.md b/mkdocs/docs/HPC/only/gent/available_software/detail/ANTs.md
@@ -0,0 +1,24 @@
+---
+hide:
+  - toc
+---
+
+ANTs
+====
+
+# Available modules
+
+
+The overview below shows which ANTs installations are available per HPC-UGent Tier-2cluster, ordered based on software version (new to old).
+
+To start using ANTs, load one of these modules using a `module load` command like:
+
+```shell
+module load ANTs/2.3.2-foss-2019b-Python-3.7.4
+```
+
+*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)*  
+
+| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini|
+| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
+|ANTs/2.3.2-foss-2019b-Python-3.7.4|-|x|x|-|x|x|-|x|
diff --git a/mkdocs/docs/HPC/only/gent/available_software/detail/APR-util.md b/mkdocs/docs/HPC/only/gent/available_software/detail/APR-util.md
@@ -0,0 +1,24 @@
+---
+hide:
+  - toc
+---
+
+APR-util
+========
+
+# Available modules
+
+
+The overview below shows which APR-util installations are available per HPC-UGent Tier-2cluster, ordered based on software version (new to old).
+
+To start using APR-util, load one of these modules using a `module load` command like:
+
+```shell
+module load APR-util/1.6.1-GCCcore-11.2.0
+```
+
+*(This data was automatically generated on Fri, 01 Sep 2023 at 08:52:14 CEST)*  
+
+| |accelgor|doduo|donphan|gallade|joltik|skitty|swalot|victini|
+| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
+|APR-util/1.6.1-GCCcore-11.2.0|x|x|x|-|x|x|x|x|