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pato_ontology_pato.yaml
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pr571:
- change definition of PATO:0055001 from 'A spatial distribution of a process in which
the process occupies a smaller length, area, or volume than the reference process.
For example, heterochromatin may form over a shorter length of a chromosome in a
mutant than in wild type.' to 'A spatial distribution of a process in which the
process occupies a smaller length, area, or volume than the reference process. For
example, heterochromatin may form over a shorter length of a chromosome in a mutant
than in wild type.'
- change definition of PATO:0010005 from 'A physical quality of a process that is
its spatial distribution. For example, bone mineralization follows stereotypical
spatial distribution patterns during development, which may be altered in some phenotypes.'
to 'A physical quality of a process that is its spatial distribution. For example,
bone mineralization follows stereotypical spatial distribution patterns during development,
which may be altered in some phenotypes.'
- change definition of PATO:0010003 from 'A propagation velocity that is higher than
normal.' to 'A propagation velocity that is higher than normal.'
- change definition of PATO:0010006 from "A quality of a single cell inhering in the
bearer by virtue of the bearer's size or shape or structure." to "A quality of a
single cell inhering in the bearer by virtue of the bearer's size or shape or structure."
- change definition of PATO:0010004 from 'A propagation velocity that is lower than
normal.' to 'A propagation velocity that is lower than normal.'
- change definition of PATO:0010002 from 'The velocity of spatial propagation of a
process. Examples include the velocity of propagation of an action potential along
an axon.' to 'The velocity of spatial propagation of a process. Examples include
the velocity of propagation of an action potential along an axon.'
pr562:
- rename PATO:0001408 from 'ciliatedness' to 'ciliated'
- change definition of PATO:0001408 from "A cellular quality inhering in a bearer
by virtue of the bearer's having thin, tail-like projections extending outwards
from the cell body." to "A cellular quality inhering in a bearer by virtue of the
bearer's having one or more cilia as a part."
- create PATO:0010007
- create edge PATO:0010007 rdfs:subClassOf PATO:0001408
- add definition "A cellular quality inhering in a bearer by virtue of the bearer's
having multiple cilia." to PATO:0010007
- change definition of PATO:0040042 from "A decreased quality inhering in a bearer
by virtue of the bearer's decreased magnitude in proportion to the magnitude of
another entity." to "A decreased quality inhering in a bearer by virtue of the bearer's
decreased magnitude in proportion to the magnitude of another entity."
- create PATO:0010008
- create edge PATO:0010008 rdfs:subClassOf PATO:0001408
- add definition "A cellular quality inhering in a bearer by virtue of the bearer's
having only one cilium." to PATO:0010008
pr556:
- delete edge PATO:0040043 rdfs:subClassOf PATO:0001470
- remove synonym 'increased ratio' for PATO:0040043
- create synonym 'increased proportionality to' for PATO:0040043
- rename PATO:0040043 from 'increased proportionality to' to 'increased ratio'
- change definition of PATO:0040043 from "A proportionality quality inhering in a
bearer by virtue of the bearer's increased magnitude in respect to a related entity."
to "An increased quality inhering in a bearer by virtue of the bearer's increased
magnitude in proportion to the magnitude of another entity."
- remove synonym 'ratio' for PATO:0001470
- create synonym 'proportionality to' for PATO:0001470
- rename PATO:0001470 from 'proportionality to' to 'ratio'
- change definition of PATO:0001470 from "A quality inhering in a bearer by virtue
of the bearer's magnitude in respect to a related entity." to "A quality inhering
in a bearer by virtue of the bearer's magnitude in proportion to the magnitude of
another entity."
- delete edge PATO:0040042 rdfs:subClassOf PATO:0001470
- remove synonym 'decreased ratio' for PATO:0040042
- create synonym 'decreased proportionality to' for PATO:0040042
- rename PATO:0040042 from 'decreased proportionality to' to 'decreased ratio'
- change definition of PATO:0040042 from "A proportionality quality inhering in a
bearer by virtue of the bearer's decreased magnitude in respect to a related entity."
to "A decreased quality inhering in a bearer by virtue of the bearer's decreased
magnitude in proportion to the magnitude of another entity."
pr528:
- delete edge PATO:0000644 rdfs:subClassOf PATO:0000586
- create edge PATO:0000644 rdfs:subClassOf PATO:0002305
- change definition of PATO:0000644 from "A increased size quality inhering in an
organ or tissue by virtue of the bearer's exhibiting increased number of cells."
to "A physical quality inhering in an organ or tissue by virtue of the bearer's
exhibiting an increased number of cells, typically associated with an increase in
size."
- delete edge PATO:0000645 rdfs:subClassOf PATO:0000587
- create edge PATO:0000645 rdfs:subClassOf PATO:0002303
- change definition of PATO:0000645 from "A decreased size quality inhering in a bearer
by virtue of the bearer's exhibiting reduced number of cells within an organ or
tissue." to "A physical quality inhering in an organ or tissue by virtue of the
bearer's exhibiting a decreased number of cells, typically associated with a decrease
in size."
pr503:
- change definition of PATO:0001852 from "A positional quality inhering in a bearer
by virtue of the bearer's being out of its usual or proper place, or position."
to "A positional quality inhering in a bearer by virtue of the bearer's being out
of its usual or proper place, or position due to it being physically moved from
the normal location."
pr487:
- change definition of PATO:0001291 from 'A physical quality that inheres in an bearer
by virtue of how that bearer interacts with electromagnetic radiation.' to 'A radiation
quality that inheres in a bearer by virtue of how that bearer interacts with electromagnetic
radiation.'
- change definition of PATO:0001739 from 'A quality that inheres in an bearer by virtue
of how that bearer interacts with radiation.' to 'A quality of radiation that reflects
the fluence spectrum of charged and neutral particles within the material or medium
where dose is being deposited.'
pr486:
- create PATO:0040056
- create edge PATO:0040056 rdfs:subClassOf PATO:0001894
- create synonym 'female with differences of sexual differentiation' for PATO:0040056
- create synonym 'female with disorder of sexual development' for PATO:0040056
- create synonym 'female, DSD' for PATO:0040056
- create synonym 'intersex' for PATO:0040056
- add definition 'A biological sex quality inhering in an individual or a population
who are otherwise female of a non-hermaphroditic species who has ambiguous or atypical
congenital development of the reproductive system.' to PATO:0040056
- create PATO:0040049
- create edge PATO:0040049 rdfs:subClassOf PATO:0001894
- create synonym 'intersex' for PATO:0040049
- create synonym 'male with differences of sexual differentiation' for PATO:0040049
- create synonym 'male with disorder of sexual development' for PATO:0040049
- create synonym 'male, DSD' for PATO:0040049
- add definition 'A biological sex quality inhering in an individual or a population
who are otherwise male of a non-hermaphroditic species who has ambiguous or atypical
congenital development of the reproductive system.' to PATO:0040049
pr476:
- create PATO:0070059
- create edge PATO:0070059 rdfs:subClassOf PATO:0000150
- add definition "A texture quality inhering in a bearer by virtue of the bearer's
being covered by iron oxide as a result of oxidation." to PATO:0070059
pr468:
- delete edge PATO:0001558 reciprocal_of PATO:0000462
- create edge PATO:0001558 RO:0015012 PATO:0000462
- obsolete has_cross_section with replacement RO:0015011
- rename has_cross_section from 'has_cross_section' to 'obsolete has_cross_section'
- 'change definition of has_cross_section from ''s3 has_cross_section s3 if and only
if : there exists some 2d plane that intersects the bearer of s3, and the impression
of s3 upon that plane has shape quality s2.'' to ''OBSOLETE. s3 has_cross_section
s3 if and only if : there exists some 2d plane that intersects the bearer of s3,
and the impression of s3 upon that plane has shape quality s2.'''
- delete edge PATO:0000462 reciprocal_of PATO:0001558
- delete edge PATO:0000462 reciprocal_of PATO:0002000
- create edge PATO:0000462 RO:0015012 PATO:0001558
- create edge PATO:0000462 RO:0015012 PATO:0002000
- rename different_in_magnitude_relative_to from 'different_in_magnitude_relative_to'
to 'obsolete different_in_magnitude_relative_to'
- change definition of different_in_magnitude_relative_to from 'q1 different_in_magnitude_relative_to
q2 if and only if magnitude(q1) NOT =~ magnitude(q2). Here, magnitude(q) is a function
that maps a quality to a unit-invariant scale.' to 'OBSOLETE. q1 different_in_magnitude_relative_to
q2 if and only if magnitude(q1) NOT =~ magnitude(q2). Here, magnitude(q) is a function
that maps a quality to a unit-invariant scale.'
- obsolete different_in_magnitude_relative_to with replacement RO:0015006
- rename realized_by from 'realized_by' to 'obsolete realized_by'
- delete edge PATO:0001873 has_cross_section PATO:0000411
- create edge PATO:0001873 RO:0015011 PATO:0000411
- delete edge decreased_in_magnitude_relative_to rdfs:subClassOf different_in_magnitude_relative_to
- obsolete decreased_in_magnitude_relative_to with replacement RO:0015008
- rename decreased_in_magnitude_relative_to from 'decreased_in_magnitude_relative_to'
to 'obsolete decreased_in_magnitude_relative_to'
- change definition of decreased_in_magnitude_relative_to from 'q1 decreased_in_magnitude_relative_to
q2 if and only if magnitude(q1) < magnitude(q2). Here, magnitude(q) is a function
that maps a quality to a unit-invariant scale.' to 'OBSOLETE. q1 decreased_in_magnitude_relative_to
q2 if and only if magnitude(q1) < magnitude(q2). Here, magnitude(q) is a function
that maps a quality to a unit-invariant scale.'
- delete edge PATO:0000297 decreased_in_magnitude_relative_to PATO:0000461
- create edge PATO:0000297 RO:0015008 PATO:0000461
- delete edge PATO:0002000 reciprocal_of PATO:0000462
- create edge PATO:0002000 RO:0015012 PATO:0000462
- rename similar_in_magnitude_relative_to from 'similar_in_magnitude_relative_to'
to 'obsolete similar_in_magnitude_relative_to'
- change definition of similar_in_magnitude_relative_to from 'q1 similar_in_magnitude_relative_to
q2 if and only if magnitude(q1) =~ magnitude(q2). Here, magnitude(q) is a function
that maps a quality to a unit-invariant scale.' to 'OBSOLETE. q1 similar_in_magnitude_relative_to
q2 if and only if magnitude(q1) =~ magnitude(q2). Here, magnitude(q) is a function
that maps a quality to a unit-invariant scale.'
- obsolete similar_in_magnitude_relative_to with replacement RO:0015009
- delete edge PATO:0002007 has_cross_section PATO:0002006
- create edge PATO:0002007 RO:0015011 PATO:0002006
- obsolete reciprocal_of with replacement RO:0015012
- rename reciprocal_of from 'reciprocal_of' to 'obsolete reciprocal_of'
- 'change definition of reciprocal_of from ''q1 reciprocal_of q2 if and only if :
q1 and q2 are relational qualities and a phenotype e q1 e2 mutually implies a phenotype
e2 q2 e.'' to ''OBSOLETE. q1 reciprocal_of q2 if and only if : q1 and q2 are relational
qualities and a phenotype e q1 e2 mutually implies a phenotype e2 q2 e.'''
- delete edge increased_in_magnitude_relative_to rdfs:subClassOf different_in_magnitude_relative_to
- obsolete increased_in_magnitude_relative_to with replacement RO:0015007
- rename increased_in_magnitude_relative_to from 'increased_in_magnitude_relative_to'
to 'obsolete increased_in_magnitude_relative_to'
- change definition of increased_in_magnitude_relative_to from 'q1 increased_in_magnitude_relative_to
q2 if and only if magnitude(q1) > magnitude(q2). Here, magnitude(q) is a function
that maps a quality to a unit-invariant scale.' to 'OBSOLETE. q1 increased_in_magnitude_relative_to
q2 if and only if magnitude(q1) > magnitude(q2). Here, magnitude(q) is a function
that maps a quality to a unit-invariant scale.'
- delete edge PATO:0001499 has_cross_section PATO:0000411
- create edge PATO:0001499 RO:0015011 PATO:0000411
- obsolete has_relative_magnitude with replacement RO:0015010
- rename has_relative_magnitude from 'has_relative_magnitude' to 'obsolete has_relative_magnitude'
- delete edge PATO:0001872 has_cross_section PATO:0000413
- create edge PATO:0001872 RO:0015011 PATO:0000413
- delete edge PATO:0001333 increased_in_magnitude_relative_to PATO:0000461
- create edge PATO:0001333 RO:0015007 PATO:0000461
- delete edge PATO:0001905 reciprocal_of PATO:0002050
- create edge PATO:0001905 RO:0015012 PATO:0002050
- delete edge PATO:0000070 reciprocal_of PATO:0001555
- create edge PATO:0000070 RO:0015012 PATO:0001555
- delete edge PATO:0001555 reciprocal_of PATO:0000070
- create edge PATO:0001555 RO:0015012 PATO:0000070
- delete edge PATO:0002050 reciprocal_of PATO:0001905
- create edge PATO:0002050 RO:0015012 PATO:0001905
- delete edge PATO:0001891 has_cross_section PATO:0000946
- create edge PATO:0001891 RO:0015011 PATO:0000946
pr467:
- change definition of PATO:0070026 from 'A cell morphology that inheres in neurons
which possess a single axon and many dendrites and dendritic branches.' to 'A cell
morphology that inheres in neurons which possess three or more neurites, usually
a single axon and many dendrites and dendritic branches.'
pr458:
- obsolete singly_occurring_form_of
- rename singly_occurring_form_of from 'singly_occurring_form_of' to 'obsolete singly_occurring_form_of'
- obsolete inversely_associated_with
- rename inversely_associated_with from 'inversely_associated_with' to 'obsolete inversely_associated_with'
- change definition of inversely_associated_with from 'q1 inversely_associated_with
q2 iff q1 is dependent on q2, and the magnitude of q1 decreases if the magnitude
of q2 is increased, or the magnitude of q1 increases if the magnitude of q2 is decreased.
The relationship is not necessarily linear.' to 'OBSOLETE. q1 inversely_associated_with
q2 iff q1 is dependent on q2, and the magnitude of q1 decreases if the magnitude
of q2 is increased, or the magnitude of q1 increases if the magnitude of q2 is decreased.
The relationship is not necessarily linear.'
- obsolete is_measurement_of
- rename is_measurement_of from 'is_measurement_of' to 'obsolete is_measurement_of'
- obsolete has_divisor_entity
- rename has_divisor_entity from 'has_divisor_entity' to 'obsolete has_divisor_entity'
- delete edge has_dividend_quality rdfs:subClassOf has_ratio_quality
- rename has_dividend_quality from 'has_dividend_quality' to 'obsolete has_dividend_quality'
- obsolete has_dividend_quality
- obsolete has_dividend_entity
- rename has_dividend_entity from 'has_dividend_entity' to 'obsolete has_dividend_entity'
- obsolete is_magnitude_of
- rename is_magnitude_of from 'is_magnitude_of' to 'obsolete is_magnitude_of'
- obsolete is_unit_of
- rename is_unit_of from 'is_unit_of' to 'obsolete is_unit_of'
- obsolete has_ratio_quality
- rename has_ratio_quality from 'has_ratio_quality' to 'obsolete has_ratio_quality'
- delete edge has_divisor_quality rdfs:subClassOf has_ratio_quality
- rename has_divisor_quality from 'has_divisor_quality' to 'obsolete has_divisor_quality'
- obsolete has_divisor_quality
- obsolete directly_associated_with
- rename directly_associated_with from 'directly_associated_with' to 'obsolete directly_associated_with'
- change definition of directly_associated_with from 'q1 directly_associated_with
q2 iff q1 is dependent on q2, and the magnitude of q1 increases if the magnitude
of q2 is increased, or the magnitude of q1 decreases if the magnitude of q2 is decreased.
The relationship is not necessarily linear.' to 'OBSOLETE. q1 directly_associated_with
q2 iff q1 is dependent on q2, and the magnitude of q1 increases if the magnitude
of q2 is increased, or the magnitude of q1 decreases if the magnitude of q2 is decreased.
The relationship is not necessarily linear.'
pr452:
- create PATO:0070046
- create edge PATO:0070046 rdfs:subClassOf PATO:0070045
- add definition 'An affinity inhering in an anatomical structure by virtue of the
bearer exhibiting a molecular interaction that stains and colors, pale-pink, with
Wright-Giemsa stain.' to PATO:0070046
- create PATO:0070045
- create edge PATO:0070045 rdfs:subClassOf PATO:0070044
- add definition 'A quality inhering in an anotomical structure by virtue of its capacity
to be stained by specific histological dyes.' to PATO:0070045
- delete edge PATO:0002419 rdfs:subClassOf PATO:0002070
- create edge PATO:0002419 rdfs:subClassOf PATO:0070045
- change definition of PATO:0002419 from 'An affinity inhering in a tissue constituent
by virtue of the bearer exhibiting a molecular interaction for eosin dye.' to 'An
affinity inhering in an anatomical structure by virtue of the bearer exhibiting
a molecular interaction for eosin dye.'
- create PATO:0070044
- create edge PATO:0070044 rdfs:subClassOf PATO:0001241
- add definition 'A quality of continuant that exist at the anatomical level of organisation
and anything under it. This includes, but is not limited to, cells , tissues, and
components.' to PATO:0070044
- delete edge PATO:0001396 rdfs:subClassOf PATO:0001241
- create edge PATO:0001396 rdfs:subClassOf PATO:0070044
- delete edge PATO:0002094 rdfs:subClassOf PATO:0002070
- create edge PATO:0002094 rdfs:subClassOf PATO:0070045
- change definition of PATO:0002094 from 'An affinity inhering in a tissue constituent
by virtue of the bearer exhibiting a molecular interaction for basic dyes under
specific pH conditions.' to 'An affinity inhering in an anatomical structure by
virtue of the bearer exhibiting a molecular interaction for basic dyes under specific
pH conditions.'
- create PATO:0070047
- create edge PATO:0070047 rdfs:subClassOf PATO:0070045
- add definition 'An affinity inhering in an anatomical structure by virtue of the
bearer exhibiting a molecular interaction for both basic and acid stains under specific
pH conditions.' to PATO:0070047
- delete edge PATO:0002420 rdfs:subClassOf PATO:0002070
- create edge PATO:0002420 rdfs:subClassOf PATO:0070045
- delete edge PATO:0002418 rdfs:subClassOf PATO:0002070
- create edge PATO:0002418 rdfs:subClassOf PATO:0070045
- change definition of PATO:0002418 from 'An affinity inhering in a tissue constituent
by virtue of the bearer exhibiting a molecular interaction for acidic dyes under
specific pH conditions.' to 'An affinity inhering in an anatomical structure by
virtue of the bearer exhibiting a molecular interaction for acidic dyes under specific
pH conditions.'
pr448:
- change definition of PATO:0001673 from 'Structure quality that is the presence of
closed epithelium bounded capsules containing one or more liquid or solid organism
substances.' to 'Structure quality that is the presence of at least one sac-like
closed membranous structure containing one or more liquid or solid organism substances.'
- change definition of PATO:0002089 from "A structure quality inhering in a bearer
by virtue of the bearer's body containing more than one cyst - formations of an
epithelium bounded cavity not associated with neoplasia." to "A structure quality
inhering in a bearer by virtue of the bearer's body containing more than one cyst
- formations of sac-like closed membranous structures not associated with neoplasia."
- change definition of PATO:0002088 from "A structure quality inhering in a bearer
by virtue of the bearer's body consisting of one sac." to "A structure quality inhering
in a bearer by virtue of the bearer's body containing one cyst - a formation of
a sac-like closed membranous structure not associated with neoplasia."
pr436:
- rename PATO:0040002 from 'originates from' to 'position originates from'
pr431:
- create edge PATO:0002083 rdfs:subClassOf PATO:0000051
pr430:
- remove synonym 'ventral_to' for PATO:0001632
- remove synonym 'anterior_ to' for PATO:0001196
pr429:
- create PATO:0070039
- create edge PATO:0070039 rdfs:subClassOf PATO:0070036
- add definition "A dendrite quality inhering in a neuron by virtue of the bearer's
dendrite having a terminal tuft." to PATO:0070039
- create PATO:0070041
- create edge PATO:0070041 rdfs:subClassOf PATO:0070036
- add definition "A dendrite quality inhering in a neuron by virtue of the bearer's
dendrite having numerous swellings or varicosities along their length." to PATO:0070041
- create PATO:0070040
- create edge PATO:0070040 rdfs:subClassOf PATO:0070036
- add definition "A dendrite quality inhering in a neuron by virtue of the bearer's
dendrite having few or no recognizable dendritic spines." to PATO:0070040
- create PATO:0070038
- create edge PATO:0070038 rdfs:subClassOf PATO:0070036
- add definition "A dendrite quality inhering in a neuron by virtue of the bearer's
dendrite having spines." to PATO:0070038
- create PATO:0070036
- create edge PATO:0070036 rdfs:subClassOf PATO:0000001
- add definition "A quality inhering in a neuron's dendrites by virtue of the bearer's
physical composition." to PATO:0070036
pr427:
- create PATO:0040052
- create edge PATO:0040052 rdfs:subClassOf PATO:0070000
- create synonym 'protogyny' for PATO:0040052
- add definition 'A sequential hermaphroditic quality whereby organisms start out
as female and change to male at a later life stage.' to PATO:0040052
- create PATO:0070000
- create edge PATO:0070000 rdfs:subClassOf PATO:0001340
- create synonym 'sequential hermaphroditic' for PATO:0070000
- add definition 'A hermaphroditic quality that inheres in a population or organism
where an organism changes is a different sexes during different life stages.' to
PATO:0070000
- create PATO:0040055
- create edge PATO:0040055 rdfs:subClassOf PATO:0040053
- create synonym 'protandrous hermaphrodite' for PATO:0040055
- create synonym 'protandrous hermaphroditic' for PATO:0040055
- add definition 'A protandrous quality whereby organisms start out as male and change
to hermaphrodite at a later life stage.' to PATO:0040055
- create synonym 'hermaphroditic' for PATO:0001340
- change definition of PATO:0015031 from 'The presence of a constituent, impurity,
or some other undesirable element that spoils, corrupts, infects, makes unfit, or
makes inferior a material, physical body, natural environment, place of human occupancy,
or other material entitt.' to 'The presence of a constituent, impurity, or some
other undesirable element that spoils, corrupts, infects, makes unfit, or makes
inferior a material, physical body, natural environment, place of human occupancy,
or other material entity.'
- change definition of PATO:0015033 from 'A decrease in contamination.' to 'A decrease
in contamination.'
- create PATO:0040050
- create edge PATO:0040050 rdfs:subClassOf PATO:0001894
- add definition 'A phenotypic sex quality inhering in a plant organism or a population
of plants in which the flowers have two stamens.' to PATO:0040050
- create PATO:0040051
- create edge PATO:0040051 rdfs:subClassOf PATO:0001894
- add definition 'A phenotypic sex quality inhering in a plant organism or a population
of plants in which the flowers have only one stamen.' to PATO:0040051
- create PATO:0040053
- create edge PATO:0040053 rdfs:subClassOf PATO:0070000
- create synonym 'protandry' for PATO:0040053
- add definition 'A sequential hermaphroditic quality whereby organisms start out
as male and change to female at a later life stage.' to PATO:0040053
- change definition of PATO:0015032 from 'An increase in contamination.' to 'An increase
in contamination.'
- create PATO:0040054
- create edge PATO:0040054 rdfs:subClassOf PATO:0040052
- create synonym 'protogynous hermaphrodite' for PATO:0040054
- create synonym 'protogynous hermaphroditic' for PATO:0040054
- add definition 'A protogynous quality whereby organisms start out as female and
change to hermaphrodite at a later life stage.' to PATO:0040054
pr424:
- create PATO:0040070
- create edge PATO:0040070 rdfs:subClassOf PATO:0001018
- add definition "A physical quality inhering in a bearer by virtue of the bearer's
disposition to deform by heating." to PATO:0040070
pr416:
- create PATO:0070042
- create edge PATO:0070042 rdfs:subClassOf PATO:0010006
- add definition 'A cell morphology that inheres in retinal neurons which have two
principal fibres, an axon and a dendrite, that emerge from opposite end the soma.'
to PATO:0070042
- delete edge PATO:0070012 rdfs:subClassOf PATO:0010006
- create edge PATO:0070012 rdfs:subClassOf PATO:0070027
- delete edge PATO:0070006 rdfs:subClassOf PATO:0010006
- create edge PATO:0070006 rdfs:subClassOf PATO:0070027
- rename PATO:0070006 from 'bipolar morphology' to 'cortical bipolar morphology'
- change definition of PATO:0070006 from 'A cell morphology that inheres in neurons
which have two principal fibres (dendrites or axon) that emerge from the soma and
begin to branch some distance from it, have few spines, and branch in narrow fields.
This is in contrast to bitufted morphology where branching occurs close to the soma.'
to 'A cell morphology that inheres in neurons which have two principal dendrites
that emerge from the soma and begin to branch some distance from it, have few spines,
and branch in narrow fields. This is in contrast to bitufted morphology where branching
occurs close to the soma.'
- create PATO:0070027
- create edge PATO:0070027 rdfs:subClassOf PATO:0010006
- add definition 'A cell morphology that inheres in neurons with dendrites that are
bidirectional, emerging from opposite ends of the soma, with the two arbors extending
in radial or tangential directions.' to PATO:0070027
pr414:
- change definition of PATO:0070012 from 'A cell morphology that inheres in neurons
which have two clusters of branches that originate directly from the soma and extend
in opposite directions and axons that form a plexus which spreads widely. Compared
to bipolar morphology, bitufted morphology has branching that occur close to the
soma.' to "A cell morphology that inheres in neurons which have two clusters of
primary dendrites that originate directly and extend from opposite ends of the soma,
and axons that form a plexus which spreads widely. Compared to the narrow vertical
axonal projection of bipolar morphology, and the 'horse-tail' axonal cluster of
double boquet cells, bitufted morphology has wide horizontal axonal spans, and branching
that occur close to the soma. Their vertical projection is also less extensive and
crosses mostly to neighboring layers."
pr409:
- delete edge PATO:0070015 rdfs:subClassOf PATO:0010006
- create edge PATO:0070015 rdfs:subClassOf PATO:0070026
- delete edge PATO:0070013 rdfs:subClassOf PATO:0010006
- create edge PATO:0070013 rdfs:subClassOf PATO:0070026
- delete edge PATO:0070007 rdfs:subClassOf PATO:0010006
- create edge PATO:0070007 rdfs:subClassOf PATO:0070026
- create PATO:0070026
- create edge PATO:0070026 rdfs:subClassOf PATO:0010006
- add definition 'A cell morphology that inheres in neurons which possess a single
axon and many dendrites and dendritic branches.' to PATO:0070026
- delete edge PATO:0070001 rdfs:subClassOf PATO:0010006
- create edge PATO:0070001 rdfs:subClassOf PATO:0070026
- delete edge PATO:0070010 rdfs:subClassOf PATO:0010006
- create edge PATO:0070010 rdfs:subClassOf PATO:0070026
pr408:
- create PATO:0070025
- create edge PATO:0070025 rdfs:subClassOf PATO:0010006
- add definition 'A cell morphology that inheres in neurons with only one process,
a neurite, that extends from the cell body. The neurite then branches to form dendritic
and axonal processes.' to PATO:0070025
pr405:
- create PATO:0095004
- create edge PATO:0095004 rdfs:subClassOf PATO:0001995
- add definition "An organismal quality inhering in a bearer by virtue of the bearer's
morphological and physiological adaptation for living in trees." to PATO:0095004
- create PATO:0095001
- create edge PATO:0095001 rdfs:subClassOf PATO:0001470
- create edge PATO:0095001 rdfs:subClassOf PATO:0001995
- add definition 'Quotient (or ratio) of surface area of an organism divided by the
mass of the same organism' to PATO:0095001
- create PATO:0095009
- create edge PATO:0095009 rdfs:subClassOf PATO:0001995
- add definition "An organismal quality inhering in a bearer by virtue of the bearer's
ability to burrow more than 20 cm deep into the soil and make permanent, vertical
burrows." to PATO:0095009
- create PATO:0095007
- create edge PATO:0095007 rdfs:subClassOf PATO:0001236
- add definition 'A quality of a process that happens during the hours of daylight.'
to PATO:0095007
- create PATO:0095006
- create edge PATO:0095006 rdfs:subClassOf PATO:0001236
- add definition 'A quality of a process that happens during the hours of darkness.'
to PATO:0095006
- create PATO:0095003
- create edge PATO:0095003 rdfs:subClassOf PATO:0001995
- add definition "An organismal quality inhering in a bearer by virtue of the bearer's
morphological and physiological adaptation for digging and living underground."
to PATO:0095003
- create PATO:0095008
- create edge PATO:0095008 rdfs:subClassOf PATO:0001995
- add definition "An organismal quality inhering in a bearer by virtue of the bearer's
morphological and physiological adaptation for participating in long-distance movement
of conspecifics, usually on a seasonal basis." to PATO:0095008
- create PATO:0095005
- create edge PATO:0095005 rdfs:subClassOf PATO:0001236
- add definition 'A quality of a process that happens during dawn and dusk.' to PATO:0095005
- create PATO:0095002
- create edge PATO:0095002 rdfs:subClassOf PATO:0001995
- add definition "An organismal quality inhering in a bearer by virtue of the bearer's
morphological and physiological adaptation for running." to PATO:0095002
pr396:
- create PATO:0070015
- create edge PATO:0070015 rdfs:subClassOf PATO:0010006
- add definition 'A cell morphology that inheres in neurons which have a pyramidal
shaped soma, a single axon, a large apical dendrite and multiple basal dendrites.'
to PATO:0070015
- create PATO:0070016
- create edge PATO:0070016 rdfs:subClassOf PATO:0070015
- add definition 'A pyramidal family morphology that inheres in neurons which have
an apical tree which is oriented parallel to the pia.' to PATO:0070016
- create PATO:0070020
- create edge PATO:0070020 rdfs:subClassOf PATO:0070017
- add definition 'A pyramidal cell morphology that inheres in neurons which lack a
tuft formation but extend to small radial distances forming a star-like shape.'
to PATO:0070020
- create PATO:0070017
- create edge PATO:0070017 rdfs:subClassOf PATO:0070015
- create synonym 'pyramidal cell morphology' for PATO:0070017
- create synonym 'vertical pyramidal morphology' for PATO:0070017
- add definition 'A pyramidal family morphology that inheres in neurons which have
a standard pyramidal shape with its apical dendrite aligned vertically.' to PATO:0070017
- create PATO:0070018
- create edge PATO:0070018 rdfs:subClassOf PATO:0070017
- add definition 'A pyramidal cell morphology that inheres in neurons which have a
distinct tuft formation, distal from the soma.' to PATO:0070018
- create PATO:0070021
- create edge PATO:0070021 rdfs:subClassOf PATO:0070017
- add definition 'A pyramidal cell morphology that inheres in neurons which have an
apical tree which is oriented towards the white matter.' to PATO:0070021
- create PATO:0070019
- create edge PATO:0070019 rdfs:subClassOf PATO:0070017
- add definition 'A pyramidal cell morphology that inheres in neurons which lack a
clear tuft formation but extend to large radial distances.' to PATO:0070019
pr393:
- create PATO:0070013
- create edge PATO:0070013 rdfs:subClassOf PATO:0010006
- add definition 'A cell morphology that inheres in neurons which have spiny basal
dendrites and resemble pyramidal cells but lose their apical dendrites as they mature.
Their axons nearly always emerge from the descending side of the soma, but often
recurve and ascend with arc-like collaterals.' to PATO:0070013
pr392:
- create PATO:0070012
- create edge PATO:0070012 rdfs:subClassOf PATO:0010006
- add definition 'A cell morphology that inheres in neurons which have tufts of dendrites
extending from two opposite poles of the soma, and have axons that form a plexus
which spreads widely, usually descending.' to PATO:0070012
pr391:
- create PATO:0070011
- create edge PATO:0070011 rdfs:subClassOf PATO:0010006
- "add definition 'A cell morphology that inheres in neurons which are small and round,\
\ and make highly specialized synapses with the axon initial segments of pyramidal\
\ neurons, wrapping them with candle-shaped synaptic \u201Ccartridges\u201D.' to\
\ PATO:0070011"
pr390:
- create PATO:0070010
- create edge PATO:0070010 rdfs:subClassOf PATO:0010006
- add definition 'A cell morphology that inheres in neurons that have dendritic processes
radiating from the cell body forming a star-like shape.' to PATO:0070010
pr389:
- create PATO:0070008
- create edge PATO:0070008 rdfs:subClassOf PATO:0070007
- add definition 'A martinotti cell morphology that inheres in neurons which have
axons that form a horizontal ramification, making it T-shaped.' to PATO:0070008
- create PATO:0070007
- create edge PATO:0070007 rdfs:subClassOf PATO:0010006
- add definition 'A cell morphology that inheres in neurons which are large and non-spiny,
with dendrites radiating in a multipolar or bitufted pattern, often favouring the
descending side, and axons that ascend directly from the superficial side of the
soma, and travel upward without branching.' to PATO:0070007
- create PATO:0070009
- create edge PATO:0070009 rdfs:subClassOf PATO:0070007
- add definition 'A martinotti cell morphology that inheres in neurons which have
axons that form a fan-like plexus.' to PATO:0070009
pr388:
- create PATO:0070006
- create edge PATO:0070006 rdfs:subClassOf PATO:0010006
- add definition 'A cell morphology that inheres in neurons which have two principal
fibres (dendrites or axon) that emerge from the soma and begin to branch some distance
from it, have few spines, and branch in narrow fields. This is in contrast to bitufted
morphology where branching occurs close to the soma.' to PATO:0070006
pr387:
- create PATO:0070003
- create edge PATO:0070003 rdfs:subClassOf PATO:0070002
- add definition 'A basket cell morphology that inheres in neurons with axonal arbors
composed of frequent, short, curvy axonal branches that tend to be near their somata
and within the same layer.' to PATO:0070003
- create PATO:0070002
- create edge PATO:0070002 rdfs:subClassOf PATO:0070026
- add definition 'A cell morphology that inheres in multipolar neurons with densely
branched terminal axonal arborizations that form basket-like structures surrounding
and synapsing to the somas of target cells.' to PATO:0070002
- create PATO:0070005
- create edge PATO:0070005 rdfs:subClassOf PATO:0070002
- add definition 'A basket cell morphology that inheres in neurons which have simpler
dendritic arbors (compared to small or large basket cell morphology), and an axonal
plexus of intermediate density, composed of a few long, smooth axonal branches.'
to PATO:0070005
- create PATO:0070004
- create edge PATO:0070004 rdfs:subClassOf PATO:0070002
- add definition 'A basket cell morphology that inheres in neurons that are large,
and typically ascend to give rise to many long horizontally and vertically projecting
axon collaterals that traverse neighboring columns and can extend through all cortical
layers.' to PATO:0070004
pr386:
- create PATO:0070001
- create edge PATO:0070001 rdfs:subClassOf PATO:0010006
- add definition 'A cell morphology that inheres in neurons which have a small round
soma, a large number of short, smooth, or slightly beaded primary dendrites that
give rise to only a few secondary branches, and a branched axon that establishes
a dense axonal mesh with thin shafts.' to PATO:0070001
pr363:
- create PATO:0040048
- create edge PATO:0040048 rdfs:subClassOf PATO:0000051
- create synonym 'erythema' for PATO:0040048
- create synonym 'skin redness' for PATO:0040048
- add definition 'Red due to increase blood circulation in a defined area.' to PATO:0040048
pr361:
- 'change definition of PATO:0000128 from ''A physical quality inhering in a bearer
that has mass near a gravitational body.'' to ''A physical quality inhering in a
bearer that has mass near a gravitational body. Important usage note: Note that
this ontology has a class for a similar concept, mass (PATO:0000125). Mass and weight
are not equivalent. For most use cases, the class mass is strongly preferred over
weight.'''
pr349:
- delete edge PATO:0040047 rdfs:subClassOf PATO:0001444
- create edge PATO:0040047 rdfs:subClassOf PATO:0001442
pr348:
- create PATO:0040072
- create edge PATO:0040072 rdfs:subClassOf PATO:0001396
- create synonym 'high N:C ratio' for PATO:0040072
- add definition 'A quality inhering in a cell by virtue of the cell having a high
nuclear/cytoplasmic ratio.' to PATO:0040072
- create PATO:0040071
- create edge PATO:0040071 rdfs:subClassOf PATO:0001396
- create synonym 'N:C ratio' for PATO:0040071
- add definition 'A quality inhering in a cell by virtue of the ratio between the
volume of its nucleus and the volume of its cytoplasm.' to PATO:0040071
pr347:
- add PATO:0040043 to subset relational_slim
- add PATO:0040042 to subset relational_slim
pr332:
- delete edge PATO:0015001 rdfs:subClassOf PATO:0000462
- create edge PATO:0015001 rdfs:subClassOf PATO:0040060
- create PATO:0040060
- add PATO:0040060 to subset absent_slim
- create edge PATO:0040060 rdfs:subClassOf PATO:0000051
- create edge PATO:0040060 rdfs:subClassOf PATO:0040058
- create synonym 'anatomical entity absence' for PATO:0040060
- add definition 'A quality denoting the lack of an anatomical entity or cellular
component.' to PATO:0040060
- create PATO:0040059
- add PATO:0040059 to subset absent_slim
- create edge PATO:0040059 rdfs:subClassOf PATO:0001236
- create synonym 'Process absence' for PATO:0040059
- add definition 'A quality denoting the lack of a process or function.' to PATO:0040059
- delete edge PATO:0002291 rdfs:subClassOf PATO:0000462
- create edge PATO:0002291 rdfs:subClassOf PATO:0040060
- create PATO:0040058
- add PATO:0040058 to subset absent_slim
- create edge PATO:0040058 rdfs:subClassOf PATO:0001241
- create synonym 'physical absence' for PATO:0040058
- add definition 'A quality denoting the lack of a physical entity or object, such
as a chemical.' to PATO:0040058
pr328:
- create PATO:0040047
- create edge PATO:0040047 rdfs:subClassOf PATO:0001444
- add definition 'Existing or functioning as though broken into separate parts; disorganized;
disunified.' to PATO:0040047
pr325:
- create synonym 'aplasia/hypoplasia' for PATO:0002290
- add definition 'Decreased size or absence of organ, tissue or cell due to a reduction
in cell numbers.' to PATO:0002290
pr324:
- create PATO:0040044
- create edge PATO:0040044 rdfs:subClassOf PATO:0001444
- create synonym 'burst' for PATO:0040044
- add definition "A structural quality inhering in a bearer by virtue of the bearer's
components being torn, typically used for soft tissues or membranes." to PATO:0040044
- remove synonym 'burst' for PATO:0001444
- remove synonym 'ruptured' for PATO:0001444
- change definition of PATO:0001444 from "A broken quality inhering in a bearer by
virtue of the bearer's being broken open." to "A structural quality inhering in
a bearer by virtue of the bearer's components no longer being in a single contiguous
unit."
pr319:
- delete edge PATO:0001598 rdfs:subClassOf PATO:0000140
- create edge PATO:0001598 rdfs:subClassOf PATO:0001018
- delete edge PATO:0015007 rdfs:subClassOf PATO:0000140
- create edge PATO:0015007 rdfs:subClassOf PATO:0001018
pr316:
- create PATO:0040043
- create edge PATO:0040043 rdfs:subClassOf PATO:0001470
- create synonym 'increased proportion' for PATO:0040043
- create synonym 'increased proportionality' for PATO:0040043
- create synonym 'increased quotient' for PATO:0040043
- create synonym 'increased ratio' for PATO:0040043
- add definition "A proportionality quality inhering in a bearer by virtue of the
bearer's increased magnitude in respect to a related entity." to PATO:0040043
- create PATO:0040042
- create edge PATO:0040042 rdfs:subClassOf PATO:0001470
- create synonym 'decreased proportion' for PATO:0040042
- create synonym 'decreased proportionality' for PATO:0040042
- create synonym 'decreased quotient' for PATO:0040042
- create synonym 'decreased ratio' for PATO:0040042
- add definition "A proportionality quality inhering in a bearer by virtue of the
bearer's decreased magnitude in respect to a related entity." to PATO:0040042
pr304:
- rename PATO:0040001 from 'ring-shaped' to 'obsolete ring-shaped'
- delete edge PATO:0040001 rdfs:subClassOf PATO:0000947
- remove synonym 'annular' for PATO:0040001
- obsolete PATO:0040001 with replacement PATO:0002539
- remove definition for PATO:0040001
- delete edge PATO:0002539 rdfs:subClassOf PATO:0000052
- create edge PATO:0002539 rdfs:subClassOf PATO:0000947
- create synonym 'annular' for PATO:0002539
- create synonym 'ring-shaped' for PATO:0002539
- create PATO:0040032
- create edge PATO:0040032 rdfs:subClassOf PATO:0002304
- add definition 'A distance traveled in a specific time that is relatively high.'
to PATO:0040032
- create PATO:0040033
- create edge PATO:0040033 rdfs:subClassOf PATO:0002302
- add definition 'A distance traveled in a specific time that is relatively low.'
to PATO:0040033
pr303:
- delete edge PATO:0000973 rdfs:subClassOf PATO:0000970
- create edge PATO:0000973 rdfs:subClassOf PATO:0000141
- change definition of PATO:0000973 from "A permeability quality inhering in a bearer
by virtue of the bearer's disposition to admit the passage of gas or liquid through
pores or interstices." to "A structure quality inhering in a bearer by virtue of
the bearer's disposition to admit the passage of gas or liquid through pores or
interstices."
pr302:
- create synonym 'smooth' for PATO:0001975
pr301:
- create PATO:0040030
- add PATO:0040030 to subset value_slim
- create edge PATO:0040030 rdfs:subClassOf PATO:0000574
- create edge PATO:0040030 rdfs:subClassOf PATO:0000599
- add definition 'A width and length quality which is relatively small, where both
width and length are decreased.' to PATO:0040030
- create edge PATO:0040030 RO:0002604 PATO:0040031
- create PATO:0040031
- add PATO:0040031 to subset value_slim
- create edge PATO:0040031 rdfs:subClassOf PATO:0000573
- create edge PATO:0040031 rdfs:subClassOf PATO:0000600
- add definition 'A width and length quality that is relatively large, where both
width and length are increased.' to PATO:0040031
- create edge PATO:0040031 RO:0002604 PATO:0040030
pr291:
- create PATO:0040029
- create edge PATO:0040029 rdfs:subClassOf PATO:0001018
- add definition 'A physical quality inhering in a bearer by virtue of that bearer
being shielded from visible light.' to PATO:0040029
pr290:
- create PATO:0040028
- create edge PATO:0040028 rdfs:subClassOf PATO:0001995
- add definition 'An organismal quality of having successfully reproduced.' to PATO:0040028
pr282:
- create PATO:0040027
- create edge PATO:0040027 rdfs:subClassOf PATO:0001393
- create synonym 'double haploid' for PATO:0040027
- create synonym 'double-haploid' for PATO:0040027
- add definition "A ploidy quality inhering in a bearer by virtue of the bearer's
haploid cells undergo chromosome doubling." to PATO:0040027
pr270:
- rename is_opposite_of from 'is opposite of' to 'is_opposite_of'
pr262:
- create PATO:0060003
- create edge PATO:0060003 rdfs:subClassOf PATO:0060001
- add definition "A quality inhering in a bearer by virtue of the bearer's being present
in females and absent from males in members of the same species." to PATO:0060003
- create PATO:0060001
- create edge PATO:0060001 rdfs:subClassOf PATO:0002451
- add definition "A quality inhering in a bearer by virtue of the bearer's being present
in one sex and absent from the other in members of the same species." to PATO:0060001
- create PATO:0060002
- create edge PATO:0060002 rdfs:subClassOf PATO:0060001
- add definition "A quality inhering in a bearer by virtue of the bearer's being present
in males and absent from females in members of the same species." to PATO:0060002
pr256:
- create PATO:0055001
- add definition 'A spatial distribution of a process in which the process occupies
a smaller length, area, or volume than the reference process. For example, heterochromatin
may form over a shorter length of a chromosome in a mutant than in wild type.' to
PATO:0055001
- create PATO:0055002
- add definition 'A spatial distribution of a process in which the process occupies
a greater length, area, or volume than the reference process. For example, heterochromatin
may form over a shorter length of a chromosome in a mutant than in wild type.' to
PATO:0055002
pr235:
- create synonym 'hyaline' for PATO:0000964
pr233:
- create edge PATO:0000014 rdfs:subClassOf PATO:0000051
pr228:
- create PATO:0050000
- create edge PATO:0050000 rdfs:subClassOf PATO:0000161
- add definition 'The number of repeated events per unit time, occurring in a repeating
series. (e.g. the number of heart beats occurring over 1 minute)' to PATO:0050000
- create PATO:0050001
- create edge PATO:0050001 rdfs:subClassOf PATO:0000161
- 'add definition ''The rate of output of a continuous process. Example include: growth
rate, cell migration rate, enzyme reaction rate.'' to PATO:0050001'
- delete edge PATO:0000044 rdfs:subClassOf PATO:0000161
- create edge PATO:0000044 rdfs:subClassOf PATO:0050000
- delete edge PATO:0001492 rdfs:subClassOf PATO:0000161
- create edge PATO:0001492 rdfs:subClassOf PATO:0050001
pr207:
- create PATO:0040022
- create edge PATO:0040022 rdfs:subClassOf PATO:0000052
- add definition 'A shape quality inhering in a bearer by virtue of the bearer being
expanded laterally and or opened outward in shape.' to PATO:0040022
- create PATO:0040023
- create edge PATO:0040023 rdfs:subClassOf PATO:0000133
- create synonym 'disto-medial orientation' for PATO:0040023
- create synonym 'distomedial' for PATO:0040023
- add definition 'An orientation quality inhering in a bearer by virtue of the bearer
having a position that is directed distomedially, ie, pertaining to an inside aspect,
but also farther away from the center of the body.' to PATO:0040023
- create PATO:0040021
- create edge PATO:0040021 rdfs:subClassOf PATO:0000467
- add definition 'The bearer of this quality has_part n=1 of the indicated entity
type, where n is bilaterally paired for a comparable organism..' to PATO:0040021
- remove synonym 'flared' for PATO:0001785
- create edge PATO:0040025 rdfs:subClassOf PATO:0000467
- rename PATO:0040025 from 'lesioned' to 'lesioned'
- create synonym 'paired' for PATO:0040025
- change definition of PATO:0040025 from 'A structural quality which is held by a
bearer where a localized pathological or traumatic structural change, damage, deformity,
or discontinuity of tissue, organ, or body part is present.' to 'The bearer of this
quality has_part n=2 of the indicated entity type, where n is unpaired for a comparable
organism.'
pr206:
- delete edge PATO:0001334 rdfs:subClassOf PATO:0000122
- create edge PATO:0001334 rdfs:subClassOf PATO:0001708
- rename PATO:0002104 from 'inflammatory' to 'inflamed'
- delete edge PATO:0001711 rdfs:subClassOf PATO:0000122
- create edge PATO:0001711 rdfs:subClassOf PATO:0001708
pr203:
- create PATO:0040019
- create edge PATO:0040019 rdfs:subClassOf PATO:0000025
- add definition 'Fibrosis is the formation of excess fibrous connective tissue in
an organ or tissue in a reparative or reactive process.' to PATO:0040019
pr201:
- delete PATO:0040017
- delete edge PATO:0040017 rdfs:subClassOf PATO:0001433
- create synonym 'dysgenesis' for PATO:0002019
- create PATO:0040005
- create edge PATO:0040005 rdfs:subClassOf PATO:0000133
- create synonym 'posteroventrally oriented' for PATO:0040005
- add definition 'An orientation quality inhering in a bearer by virtue of the bearer
having a position that is directed posteroventrally.' to PATO:0040005
pr199:
- create PATO:0040014
- create edge PATO:0040014 rdfs:subClassOf PATO:0000052
- create synonym 'band like' for PATO:0040014
- create synonym 'strip like' for PATO:0040014
- create synonym 'strip-like' for PATO:0040014
- add definition 'A shape that is in the form of a narrow strip encircling an object.'
to PATO:0040014
- create PATO:0040015
- create edge PATO:0040015 rdfs:subClassOf PATO:0002008
- create synonym 'trough like' for PATO:0040015
- create synonym 'trough-like' for PATO:0040015
- create synonym 'trough-shaped' for PATO:0040015
- add definition "A concave 3-D shape quality inhering in a bearer by virtue of the
bearer's shape resembling that of a trough, being narrow, long, and boxlike in shape."
to PATO:0040015
- create PATO:0040009
- create edge PATO:0040009 rdfs:subClassOf PATO:0002008
- add definition "A concave 3-D shape quality inhering in a bearer by virtue of the
bearer's being shaped in the form of a bowl." to PATO:0040009
- create PATO:0040017
- create edge PATO:0040017 rdfs:subClassOf PATO:0001433
- create synonym 'dysgenesis' for PATO:0040017
- add definition 'A growth quality of occurrent in which the growth of an organism,
structure or group of organisms is abnormal.' to PATO:0040017
- remove synonym 'dysgenesis' for PATO:0002019
- change definition of PATO:0040003 from 'The ability of a pathogen to produce an
infectious disease or disorder in an another organism.' to 'The ability of a pathogen
to produce an infectious disease or disorder in an another organism.'
- create PATO:0040008
- create edge PATO:0040008 rdfs:subClassOf PATO:0002267
- add definition "A shape quality inhering in a bearer by virtue of the bearer's having
an ornamental border consisting of short straight or twisted threads or strips hanging
from cut or raveled edges or from a separate band." to PATO:0040008
- create PATO:0040012
- create edge PATO:0040012 rdfs:subClassOf PATO:0000052
- create synonym 'plug shaped' for PATO:0040012
- add definition 'A shape that is in the form of a plug, being tube-like and expanded
on one end.' to PATO:0040012
- create PATO:0040007
- create edge PATO:0040007 rdfs:subClassOf PATO:0000052
- add definition "A shape quality inhering in a bearer by virtue of the bearer's having
a shape like a shell." to PATO:0040007
- create PATO:0040013
- create edge PATO:0040013 rdfs:subClassOf PATO:0000133
- create synonym 'dorsomedially directed' for PATO:0040013
- add definition 'An orientation quality inhering in a bearer by virtue of the bearer
having a position that is directed dorsomedially.' to PATO:0040013
- add definition "An organismal quality inhering in a bearer by virtue of the bearer's
physical expression of sexual characteristics." to PATO:0001894
- change definition of PATO:0000261 from 'A quality of a single physical entity which
is held by a bearer when the latter exhibits complete growth, differentiation, or
development.' to 'A quality of a single physical entity which is held by a bearer
when the latter exhibits a state of growth, differentiation, or development.'
- create PATO:0040016
- create edge PATO:0040016 rdfs:subClassOf PATO:0002006
- add definition "A shape quality inhering in a bearer by virtue of the bearer's having
five angles and five sides." to PATO:0040016
- create PATO:0040010
- create edge PATO:0040010 rdfs:subClassOf PATO:0000004
- add definition 'Mobility relative to a second entity.' to PATO:0040010
- create PATO:0040011
- create edge PATO:0040011 rdfs:subClassOf PATO:0000004
- add definition 'Immobility relative to a second entity.' to PATO:0040011
pr171:
- create synonym 'centric' for PATO:0001325
- create synonym 'pennate' for PATO:0001324
pr169:
- delete edge PATO:0000085 rdfs:subClassOf PATO:0001018
- create edge PATO:0000085 rdfs:subClassOf PATO:0001995
- delete edge PATO:0001046 rdfs:subClassOf PATO:0001018
- create edge PATO:0001046 rdfs:subClassOf PATO:0001995
- delete edge PATO:0000077 rdfs:subClassOf PATO:0001018
- create edge PATO:0000077 rdfs:subClassOf PATO:0001995
pr164:
- create PATO:0040002
- add PATO:0040002 to subset relational_slim
- create edge PATO:0040002 rdfs:subClassOf PATO:0000140
- add definition 'A positional quality inhering in a bearer by virtue of some aspect
of that bearer beginning from a position on another entity.' to PATO:0040002
pr163:
- create PATO:0040001
- create edge PATO:0040001 rdfs:subClassOf PATO:0000947
- create synonym 'annular' for PATO:0040001
- add definition 'Shaped like a ring' to PATO:0040001
pr162:
- delete edge PATO:0002064 rdfs:subClassOf PATO:0000052
- create edge PATO:0002064 rdfs:subClassOf PATO:0000141
- change definition of PATO:0002064 from "A shape quality inhering in a bearer by
virtue of the bearer's delimited by a surface with holes." to "A structure quality
inhering in a bearer by virtue of the bearer's delimited by a surface with holes."
pr161:
- create PATO:0040000
- create edge PATO:0040000 rdfs:subClassOf PATO:0000625
- add definition "An oriented quality inhering in a bearer by virtue of the bearer's
being abnormally placed or arranged." to PATO:0040000
- create synonym 'approaches' for PATO:0002259
pr160:
- add PATO:0002435 to subset relational_slim
- rename PATO:0002435 from 'abut' to 'abutting'
- create synonym 'abut' for PATO:0002435
- change definition of PATO:0002448 from "A quality inhering in a bearer by virtue
of the bearer's bing aligned or positioned towards another entity." to "A quality
inhering in a bearer by virtue of the bearer's being aligned or positioned towards
another entity."
pr152:
- delete edge PATO:0001816 rdfs:subClassOf PATO:1778
- create edge PATO:0001816 rdfs:subClassOf PATO:0001779
pr130:
- rename is_opposite_of from 'is opposite_of' to 'is opposite of'
pr119:
- change definition of PATO:0015018 from "A physical quality inhering in an entity
by virtue of the bearer's solid or liquid constituents being suspended in a gas."
to "A physical quality inhering in an entity by virtue of the bearer's solid or
liquid constituents being suspended in a gas."
- create PATO:0015029
- add PATO:0015029 to subset attribute_slim
- create edge PATO:0015029 rdfs:subClassOf PATO:0002198
- add definition "A physical quality inhering in an entity by virtue of the bearer's
solid or liquid constituents being transiently dispersed in a solid, liquid, or
gas before settling due to gravity or centrifugal forces." to PATO:0015029
- rename PATO:0015017 from 'quality of a colloidal suspension' to 'quality of a colloid'
- change definition of PATO:0015017 from "A physical quality inhering in an entity
by virtue of the bearer's solid constituents being suspended in a liquid or gas,
or the bearer's liquid constituents being suspended in a gas." to "A physical quality
inhering in an entity by virtue of a portion of the bearer's molecular or polymolecular
constituents present in one phase being dispersed in a portion of the bearer's constituents
present in another phase."
pr117:
- rename PATO:0000704 from 'pain threshold value' to 'obsolete pain threshold value'
- rename PATO:0000919 from 'absolute volume' to 'obsolete absolute volume'
- rename PATO:0000838 from 'absolute auditory ability value' to 'obsolete absolute
auditory ability value'
- rename PATO:0001116 from 'relative impulse value' to 'obsolete relative impulse
value'
- rename PATO:0000181 from 'piloerection' to 'obsolete piloerection'
- rename PATO:0000548 from 'blue light sensitivity value' to 'obsolete blue light
sensitivity value'
- rename PATO:0000098 from 'insecticide sensitivity' to 'obsolete insecticide sensitivity'
- rename PATO:0000151 from 'relative texture' to 'obsolete relative texture'
- rename PATO:0000857 from 'lordosis reflex value' to 'obsolete lordosis reflex value'
- rename PATO:0000436 from 'concrete' to 'obsolete concrete'
- rename PATO:0000506 from 'absolute sensitivity value' to 'obsolete absolute sensitivity
value'
- rename PATO:0001112 from 'energy value' to 'obsolete energy value'
- rename PATO:0001099 from 'relative force' to 'obsolete relative force'
- rename PATO:0001223 from 'quantitative value' to 'obsolete quantitative value'
- rename PATO:0000310 from 'color value' to 'obsolete color value'
- rename PATO:0000994 from 'absolute viscosity' to 'obsolete absolute viscosity'
- rename PATO:0000705 from 'relative threshold value' to 'obsolete relative threshold
value'
- rename PATO:0000177 from 'physiological function' to 'obsolete physiological function'
- rename PATO:0001038 from 'ratio' to 'obsolete ratio'
- rename PATO:0000979 from 'porosity value' to 'obsolete porosity value'
- rename PATO:0000846 from 'auditory threshold' to 'obsolete auditory threshold'
- rename PATO:0000252 from 'suckling reflex' to 'obsolete suckling reflex'
- rename PATO:0000795 from 'healing value' to 'obsolete healing value'
- rename PATO:0000653 from 'addictive substance value' to 'obsolete addictive substance
value'
- rename PATO:0000865 from 'startle reflex value' to 'obsolete startle reflex value'
- rename PATO:0000813 from 'odor type value' to 'obsolete odor type value'
- rename PATO:0000041 from 'absolutedistance' to 'obsolete absolutedistance'
- rename PATO:0000416 from 'count value' to 'obsolete count value'
- rename PATO:0000272 from 'relative neurobehavioral function' to 'obsolete relative