Skip to content
@hubmapconsortium

HuBMAP Consortium

This is the GitHub organization for repos related to the work of the HuBMAP Consortium.

Pinned Loading

  1. entity-api entity-api Public

    A set of web service calls to return information about HuBMAP entities

    Python 3 1

  2. gateway gateway Public

    Python

  3. search-api search-api Public

    HuBMAP search service and associated pieces to create an index

    Python 2 2

  4. portal-ui portal-ui Public

    HuBMAP Data Portal front end

    TypeScript 12 2

  5. ingest-ui ingest-ui Public

    HuBMAP Data Ingest Portal

    JavaScript 4

  6. ingest-pipeline ingest-pipeline Public

    Data ingest pipeline(s) for QA/metadata etl/post-processing

    Python 4 5

Repositories

Showing 10 of 173 repositories
  • hra-ui Public

    HRA UIs Monorepo (includes HRA Portal, EUI, RUI, ASCT+B Reporter, and more)

    hubmapconsortium/hra-ui’s past year of commit activity
    TypeScript 4 MIT 2 100 3 Updated Oct 31, 2024
  • xenium-pipeline Public
    hubmapconsortium/xenium-pipeline’s past year of commit activity
    0 0 0 0 Updated Oct 31, 2024
  • portal-containers Public

    Docker containers to pre-process data for visualization in the portal

    hubmapconsortium/portal-containers’s past year of commit activity
    Python 0 MIT 1 22 (1 issue needs help) 28 Updated Oct 31, 2024
  • portal-ui Public

    HuBMAP Data Portal front end

    hubmapconsortium/portal-ui’s past year of commit activity
    TypeScript 12 MIT 2 200 28 Updated Oct 31, 2024
  • codex-data-products Public

    Data product creation for HIVE processed CODEX datasets

    hubmapconsortium/codex-data-products’s past year of commit activity
    Python 0 0 1 0 Updated Oct 31, 2024
  • rna-data-products Public
    hubmapconsortium/rna-data-products’s past year of commit activity
    Python 0 GPL-3.0 0 3 0 Updated Oct 31, 2024
  • ingest-api Public
    hubmapconsortium/ingest-api’s past year of commit activity
    Python 0 MIT 0 19 1 Updated Oct 30, 2024
  • hra-do-processor Public

    hra-do-processor: HRA Digital Objects Processor

    hubmapconsortium/hra-do-processor’s past year of commit activity
    JavaScript 1 MIT 0 4 0 Updated Oct 31, 2024
  • py-hubmapbags Public

    Python package used to build the submission for the CFDE Search Portal

    hubmapconsortium/py-hubmapbags’s past year of commit activity
    Jupyter Notebook 1 2 20 3 Updated Oct 30, 2024
  • azimuth-annotate Public
    hubmapconsortium/azimuth-annotate’s past year of commit activity
    R 1 GPL-3.0 1 2 2 Updated Oct 30, 2024
View all repositories