Automated report

hubmapconsortium · Aug 15, 2022 · 389a5f4 · 389a5f4
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diff --git a/NOTES.md b/NOTES.md
@@ -6,8 +6,8 @@ Release Notes
 
 |Ontology|Version|
 | :---: | :---: |
-|CL|2022-06-18|
 |UBERON|2022-06-30|
+|CL|2022-06-18|
 
 ### ASCT+b Tables
 

diff --git a/graphs/ccf_Blood_graph.pdf b/graphs/ccf_Blood_graph.pdf
diff --git a/graphs/ccf_Blood_vasculature_graph.pdf b/graphs/ccf_Blood_vasculature_graph.pdf
diff --git a/graphs/ccf_Bone-Marrow_graph.pdf b/graphs/ccf_Bone-Marrow_graph.pdf
diff --git a/graphs/ccf_Brain_graph.pdf b/graphs/ccf_Brain_graph.pdf
diff --git a/graphs/ccf_Eye_graph.pdf b/graphs/ccf_Eye_graph.pdf
diff --git a/graphs/ccf_Fallopian_tube_graph.pdf b/graphs/ccf_Fallopian_tube_graph.pdf
diff --git a/graphs/ccf_Heart_graph.pdf b/graphs/ccf_Heart_graph.pdf
diff --git a/graphs/ccf_Kidney_graph.pdf b/graphs/ccf_Kidney_graph.pdf
diff --git a/graphs/ccf_Knee_graph.pdf b/graphs/ccf_Knee_graph.pdf
diff --git a/graphs/ccf_Large_intestine_graph.pdf b/graphs/ccf_Large_intestine_graph.pdf
diff --git a/graphs/ccf_Liver_graph.pdf b/graphs/ccf_Liver_graph.pdf
diff --git a/graphs/ccf_Lung_graph.pdf b/graphs/ccf_Lung_graph.pdf
diff --git a/graphs/ccf_Lymph_node_graph.pdf b/graphs/ccf_Lymph_node_graph.pdf
diff --git a/graphs/ccf_Lymph_vasculature_graph.pdf b/graphs/ccf_Lymph_vasculature_graph.pdf
diff --git a/graphs/ccf_Ovary_graph.pdf b/graphs/ccf_Ovary_graph.pdf
diff --git a/graphs/ccf_Pancreas_graph.pdf b/graphs/ccf_Pancreas_graph.pdf
diff --git a/graphs/ccf_Peripheral_nervous_system_graph.pdf b/graphs/ccf_Peripheral_nervous_system_graph.pdf
diff --git a/graphs/ccf_Placenta_graph.pdf b/graphs/ccf_Placenta_graph.pdf
diff --git a/graphs/ccf_Prostate_graph.pdf b/graphs/ccf_Prostate_graph.pdf
diff --git a/graphs/ccf_Skin_graph.pdf b/graphs/ccf_Skin_graph.pdf
diff --git a/graphs/ccf_Small_intestine_graph.pdf b/graphs/ccf_Small_intestine_graph.pdf
diff --git a/graphs/ccf_Spinal_Cord_graph.pdf b/graphs/ccf_Spinal_Cord_graph.pdf
diff --git a/graphs/ccf_Spleen_graph.pdf b/graphs/ccf_Spleen_graph.pdf
diff --git a/graphs/ccf_Thymus_graph.pdf b/graphs/ccf_Thymus_graph.pdf
diff --git a/graphs/ccf_Ureter_graph.pdf b/graphs/ccf_Ureter_graph.pdf
diff --git a/graphs/ccf_Urinary_bladder_graph.pdf b/graphs/ccf_Urinary_bladder_graph.pdf
diff --git a/graphs/ccf_Uterus_graph.pdf b/graphs/ccf_Uterus_graph.pdf
diff --git a/graphs/last_official_ASCTB_release/ccf_Blood_graph.pdf b/graphs/last_official_ASCTB_release/ccf_Blood_graph.pdf
diff --git a/graphs/last_official_ASCTB_release/ccf_Blood_vasculature_graph.pdf b/graphs/last_official_ASCTB_release/ccf_Blood_vasculature_graph.pdf
diff --git a/graphs/last_official_ASCTB_release/ccf_Bone-Marrow_graph.pdf b/graphs/last_official_ASCTB_release/ccf_Bone-Marrow_graph.pdf
diff --git a/graphs/last_official_ASCTB_release/ccf_Brain_graph.pdf b/graphs/last_official_ASCTB_release/ccf_Brain_graph.pdf
diff --git a/graphs/last_official_ASCTB_release/ccf_Eye_graph.pdf b/graphs/last_official_ASCTB_release/ccf_Eye_graph.pdf
diff --git a/graphs/last_official_ASCTB_release/ccf_Fallopian_tube_graph.pdf b/graphs/last_official_ASCTB_release/ccf_Fallopian_tube_graph.pdf
diff --git a/graphs/last_official_ASCTB_release/ccf_Heart_graph.pdf b/graphs/last_official_ASCTB_release/ccf_Heart_graph.pdf
diff --git a/graphs/last_official_ASCTB_release/ccf_Kidney_graph.pdf b/graphs/last_official_ASCTB_release/ccf_Kidney_graph.pdf
diff --git a/graphs/last_official_ASCTB_release/ccf_Knee_graph.pdf b/graphs/last_official_ASCTB_release/ccf_Knee_graph.pdf
diff --git a/graphs/last_official_ASCTB_release/ccf_Large_intestine_graph.pdf b/graphs/last_official_ASCTB_release/ccf_Large_intestine_graph.pdf
diff --git a/graphs/last_official_ASCTB_release/ccf_Liver_graph.pdf b/graphs/last_official_ASCTB_release/ccf_Liver_graph.pdf
diff --git a/graphs/last_official_ASCTB_release/ccf_Lung_graph.pdf b/graphs/last_official_ASCTB_release/ccf_Lung_graph.pdf
diff --git a/graphs/last_official_ASCTB_release/ccf_Lymph_node_graph.pdf b/graphs/last_official_ASCTB_release/ccf_Lymph_node_graph.pdf
diff --git a/graphs/last_official_ASCTB_release/ccf_Lymph_vasculature_graph.pdf b/graphs/last_official_ASCTB_release/ccf_Lymph_vasculature_graph.pdf
diff --git a/graphs/last_official_ASCTB_release/ccf_Ovary_graph.pdf b/graphs/last_official_ASCTB_release/ccf_Ovary_graph.pdf
diff --git a/graphs/last_official_ASCTB_release/ccf_Pancreas_graph.pdf b/graphs/last_official_ASCTB_release/ccf_Pancreas_graph.pdf
diff --git a/graphs/last_official_ASCTB_release/ccf_Peripheral_nervous_system_graph.pdf b/graphs/last_official_ASCTB_release/ccf_Peripheral_nervous_system_graph.pdf
diff --git a/graphs/last_official_ASCTB_release/ccf_Prostate_graph.pdf b/graphs/last_official_ASCTB_release/ccf_Prostate_graph.pdf
diff --git a/graphs/last_official_ASCTB_release/ccf_Skin_graph.pdf b/graphs/last_official_ASCTB_release/ccf_Skin_graph.pdf
diff --git a/graphs/last_official_ASCTB_release/ccf_Small_intestine_graph.pdf b/graphs/last_official_ASCTB_release/ccf_Small_intestine_graph.pdf
diff --git a/graphs/last_official_ASCTB_release/ccf_Spleen_graph.pdf b/graphs/last_official_ASCTB_release/ccf_Spleen_graph.pdf
diff --git a/graphs/last_official_ASCTB_release/ccf_Thymus_graph.pdf b/graphs/last_official_ASCTB_release/ccf_Thymus_graph.pdf
diff --git a/graphs/last_official_ASCTB_release/ccf_Ureter_graph.pdf b/graphs/last_official_ASCTB_release/ccf_Ureter_graph.pdf
diff --git a/graphs/last_official_ASCTB_release/ccf_Urinary_bladder_graph.pdf b/graphs/last_official_ASCTB_release/ccf_Urinary_bladder_graph.pdf
diff --git a/graphs/last_official_ASCTB_release/ccf_Uterus_graph.pdf b/graphs/last_official_ASCTB_release/ccf_Uterus_graph.pdf
diff --git a/logs/Blood_AS_CT_strict_log.tsv b/logs/Blood_AS_CT_strict_log.tsv
@@ -1,133 +1,23 @@
-s	slabel	user_slabel	o	olabel	user_olabel	0
-						CL:0000816
-						immature B cell
-						immature B cell
-						UBERON:0000178
-						Blood
-						Blood
-						CL:0000787
-						memory B cell
-						memory B cell
-						UBERON:0000178
-						Blood
-						Blood
-						CL:0000788
-						naive B cell
-						naive B cell
-						UBERON:0000178
-						Blood
-						Blood
-						CL:0000818
-						transitional stage B cell
-						transitional stage B cell
-						UBERON:0000178
-						Blood
-						Blood
-						CL:0002394
-						CD141-positive myeloid dendritic cell
-						CD141-positive myeloid dendritic cell
-						UBERON:0000178
-						Blood
-						Blood
-						CL:0002399
-						CD1c-positive myeloid dendritic cell
-						CD1c-positive myeloid dendritic cell
-						UBERON:0000178
-						Blood
-						Blood
-						CL:0002399
-						CD1c-positive myeloid dendritic cell
-						CD1c-positive myeloid dendritic cell
-						UBERON:0000178
-						Blood
-						Blood
-						CL:0001058
-						plasmacytoid dendritic cell, human
-						plasmacytoid dendritic cell, human
-						UBERON:0000178
-						Blood
-						Blood
-						CL:0000840
-						immature conventional dendritic cell
-						immature conventional dendritic cell
-						UBERON:0000178
-						Blood
-						Blood
-						CL:0001054
-						CD14-positive monocyte
-						CD14-positive monocyte
-						UBERON:0000178
-						Blood
-						Blood
-						CL:0002396
-						CD14-low, CD16-positive monocyte
-						CD14-low, CD16-positive monocyte
-						UBERON:0000178
-						Blood
-						Blood
-						CL:0000775
-						neutrophil
-						neutrophil
-						UBERON:0000178
-						Blood
-						Blood
-						CL:0000771
-						eosinophil
-						eosinophil
-						UBERON:0000178
-						Blood
-						Blood
-						CL:0000767
-						basophil
-						basophil
-						UBERON:0000178
-						Blood
-						Blood
-						CL:0000895
-						naive thymus-derived CD4-positive, alpha-beta T cell
-						naive thymus-derived CD4-positive, alpha-beta T cell
-						UBERON:0000178
-						Blood
-						Blood
-						CL:0000084
-						T cell
-						T cell
-						UBERON:0000178
-						Blood
-						Blood
-						CL:0000900
-						naive thymus-derived CD8-positive, alpha-beta T cell
-						naive thymus-derived CD8-positive, alpha-beta T cell
-						UBERON:0000178
-						Blood
-						Blood
-						CL:0001050
-						effector CD8-positive, alpha-beta T cell
-						effector CD8-positive, alpha-beta T cell
-						UBERON:0000178
-						Blood
-						Blood
-						CL:0001062
-						effector memory CD8-positive, alpha-beta T cell, terminally differentiated
-						effector memory CD8-positive, alpha-beta T cell, terminally differentiated
-						UBERON:0000178
-						Blood
-						Blood
-						CL:0000938
-						CD16-negative, CD56-bright natural killer cell, human
-						CD16-negative, CD56-bright natural killer cell, human
-						UBERON:0000178
-						Blood
-						Blood
-						CL:0000824
-						mature natural killer cell
-						mature natural killer cell
-						UBERON:0000178
-						Blood
-						Blood
-						CL:0000815
-						regulatory T cell
-						regulatory T cell
-						UBERON:0000178
-						Blood
-						Blood
+s	slabel	user_slabel	o	olabel	user_olabel
+CL:0000084	T cell	T cell	UBERON:0000178	Blood	Blood
+CL:0000767	basophil	basophil	UBERON:0000178	Blood	Blood
+CL:0000771	eosinophil	eosinophil	UBERON:0000178	Blood	Blood
+CL:0000775	neutrophil	neutrophil	UBERON:0000178	Blood	Blood
+CL:0000787	memory B cell	memory B cell	UBERON:0000178	Blood	Blood
+CL:0000788	naive B cell	naive B cell	UBERON:0000178	Blood	Blood
+CL:0000815	regulatory T cell	regulatory T cell	UBERON:0000178	Blood	Blood
+CL:0000816	immature B cell	immature B cell	UBERON:0000178	Blood	Blood
+CL:0000818	transitional stage B cell	transitional stage B cell	UBERON:0000178	Blood	Blood
+CL:0000824	mature natural killer cell	mature natural killer cell	UBERON:0000178	Blood	Blood
+CL:0000840	immature conventional dendritic cell	immature conventional dendritic cell	UBERON:0000178	Blood	Blood
+CL:0000895	naive thymus-derived CD4-positive, alpha-beta T cell	naive thymus-derived CD4-positive, alpha-beta T cell	UBERON:0000178	Blood	Blood
+CL:0000900	naive thymus-derived CD8-positive, alpha-beta T cell	naive thymus-derived CD8-positive, alpha-beta T cell	UBERON:0000178	Blood	Blood
+CL:0000938	CD16-negative, CD56-bright natural killer cell, human	CD16-negative, CD56-bright natural killer cell, human	UBERON:0000178	Blood	Blood
+CL:0001050	effector CD8-positive, alpha-beta T cell	effector CD8-positive, alpha-beta T cell	UBERON:0000178	Blood	Blood
+CL:0001054	CD14-positive monocyte	CD14-positive monocyte	UBERON:0000178	Blood	Blood
+CL:0001058	plasmacytoid dendritic cell, human	plasmacytoid dendritic cell, human	UBERON:0000178	Blood	Blood
+CL:0001062	effector memory CD8-positive, alpha-beta T cell, terminally differentiated	effector memory CD8-positive, alpha-beta T cell, terminally differentiated	UBERON:0000178	Blood	Blood
+CL:0002394	CD141-positive myeloid dendritic cell	CD141-positive myeloid dendritic cell	UBERON:0000178	Blood	Blood
+CL:0002396	CD14-low, CD16-positive monocyte	CD14-low, CD16-positive monocyte	UBERON:0000178	Blood	Blood
+CL:0002399	CD1c-positive myeloid dendritic cell	CD1c-positive myeloid dendritic cell	UBERON:0000178	Blood	Blood
+CL:0002399	CD1c-positive myeloid dendritic cell	CD1c-positive myeloid dendritic cell	UBERON:0000178	Blood	Blood