Automated report

hubmapconsortium · Aug 29, 2022 · 3ca707d · 3ca707d
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diff --git a/graphs/ccf_Blood_graph.pdf b/graphs/ccf_Blood_graph.pdf
diff --git a/graphs/ccf_Blood_vasculature_graph.pdf b/graphs/ccf_Blood_vasculature_graph.pdf
diff --git a/graphs/ccf_Bone-Marrow_graph.pdf b/graphs/ccf_Bone-Marrow_graph.pdf
diff --git a/graphs/ccf_Brain_graph.pdf b/graphs/ccf_Brain_graph.pdf
diff --git a/graphs/ccf_Eye_graph.pdf b/graphs/ccf_Eye_graph.pdf
diff --git a/graphs/ccf_Fallopian_tube_graph.pdf b/graphs/ccf_Fallopian_tube_graph.pdf
diff --git a/graphs/ccf_Heart_graph.pdf b/graphs/ccf_Heart_graph.pdf
diff --git a/graphs/ccf_Kidney_graph.pdf b/graphs/ccf_Kidney_graph.pdf
diff --git a/graphs/ccf_Knee_graph.pdf b/graphs/ccf_Knee_graph.pdf
diff --git a/graphs/ccf_Large_intestine_graph.pdf b/graphs/ccf_Large_intestine_graph.pdf
diff --git a/graphs/ccf_Liver_graph.pdf b/graphs/ccf_Liver_graph.pdf
diff --git a/graphs/ccf_Lung_graph.pdf b/graphs/ccf_Lung_graph.pdf
diff --git a/graphs/ccf_Lymph_node_graph.pdf b/graphs/ccf_Lymph_node_graph.pdf
diff --git a/graphs/ccf_Lymph_vasculature_graph.pdf b/graphs/ccf_Lymph_vasculature_graph.pdf
diff --git a/graphs/ccf_Ovary_graph.pdf b/graphs/ccf_Ovary_graph.pdf
diff --git a/graphs/ccf_Pancreas_graph.pdf b/graphs/ccf_Pancreas_graph.pdf
diff --git a/graphs/ccf_Peripheral_nervous_system_graph.pdf b/graphs/ccf_Peripheral_nervous_system_graph.pdf
diff --git a/graphs/ccf_Placenta_graph.pdf b/graphs/ccf_Placenta_graph.pdf
diff --git a/graphs/ccf_Prostate_graph.pdf b/graphs/ccf_Prostate_graph.pdf
diff --git a/graphs/ccf_Skin_graph.pdf b/graphs/ccf_Skin_graph.pdf
diff --git a/graphs/ccf_Small_intestine_graph.pdf b/graphs/ccf_Small_intestine_graph.pdf
diff --git a/graphs/ccf_Spinal_Cord_graph.pdf b/graphs/ccf_Spinal_Cord_graph.pdf
diff --git a/graphs/ccf_Spleen_graph.pdf b/graphs/ccf_Spleen_graph.pdf
diff --git a/graphs/ccf_Thymus_graph.pdf b/graphs/ccf_Thymus_graph.pdf
diff --git a/graphs/ccf_Ureter_graph.pdf b/graphs/ccf_Ureter_graph.pdf
diff --git a/graphs/ccf_Urinary_bladder_graph.pdf b/graphs/ccf_Urinary_bladder_graph.pdf
diff --git a/graphs/ccf_Uterus_graph.pdf b/graphs/ccf_Uterus_graph.pdf
diff --git a/graphs/last_official_ASCTB_release/ccf_Blood_graph.pdf b/graphs/last_official_ASCTB_release/ccf_Blood_graph.pdf
diff --git a/graphs/last_official_ASCTB_release/ccf_Blood_vasculature_graph.pdf b/graphs/last_official_ASCTB_release/ccf_Blood_vasculature_graph.pdf
diff --git a/graphs/last_official_ASCTB_release/ccf_Bone-Marrow_graph.pdf b/graphs/last_official_ASCTB_release/ccf_Bone-Marrow_graph.pdf
diff --git a/graphs/last_official_ASCTB_release/ccf_Brain_graph.pdf b/graphs/last_official_ASCTB_release/ccf_Brain_graph.pdf
diff --git a/graphs/last_official_ASCTB_release/ccf_Eye_graph.pdf b/graphs/last_official_ASCTB_release/ccf_Eye_graph.pdf
diff --git a/graphs/last_official_ASCTB_release/ccf_Fallopian_tube_graph.pdf b/graphs/last_official_ASCTB_release/ccf_Fallopian_tube_graph.pdf
diff --git a/graphs/last_official_ASCTB_release/ccf_Heart_graph.pdf b/graphs/last_official_ASCTB_release/ccf_Heart_graph.pdf
diff --git a/graphs/last_official_ASCTB_release/ccf_Kidney_graph.pdf b/graphs/last_official_ASCTB_release/ccf_Kidney_graph.pdf
diff --git a/graphs/last_official_ASCTB_release/ccf_Knee_graph.pdf b/graphs/last_official_ASCTB_release/ccf_Knee_graph.pdf
diff --git a/graphs/last_official_ASCTB_release/ccf_Large_intestine_graph.pdf b/graphs/last_official_ASCTB_release/ccf_Large_intestine_graph.pdf
diff --git a/graphs/last_official_ASCTB_release/ccf_Liver_graph.pdf b/graphs/last_official_ASCTB_release/ccf_Liver_graph.pdf
diff --git a/graphs/last_official_ASCTB_release/ccf_Lung_graph.pdf b/graphs/last_official_ASCTB_release/ccf_Lung_graph.pdf
diff --git a/graphs/last_official_ASCTB_release/ccf_Lymph_node_graph.pdf b/graphs/last_official_ASCTB_release/ccf_Lymph_node_graph.pdf
diff --git a/graphs/last_official_ASCTB_release/ccf_Lymph_vasculature_graph.pdf b/graphs/last_official_ASCTB_release/ccf_Lymph_vasculature_graph.pdf
diff --git a/graphs/last_official_ASCTB_release/ccf_Ovary_graph.pdf b/graphs/last_official_ASCTB_release/ccf_Ovary_graph.pdf
diff --git a/graphs/last_official_ASCTB_release/ccf_Pancreas_graph.pdf b/graphs/last_official_ASCTB_release/ccf_Pancreas_graph.pdf
diff --git a/graphs/last_official_ASCTB_release/ccf_Peripheral_nervous_system_graph.pdf b/graphs/last_official_ASCTB_release/ccf_Peripheral_nervous_system_graph.pdf
diff --git a/graphs/last_official_ASCTB_release/ccf_Prostate_graph.pdf b/graphs/last_official_ASCTB_release/ccf_Prostate_graph.pdf
diff --git a/graphs/last_official_ASCTB_release/ccf_Skin_graph.pdf b/graphs/last_official_ASCTB_release/ccf_Skin_graph.pdf
diff --git a/graphs/last_official_ASCTB_release/ccf_Small_intestine_graph.pdf b/graphs/last_official_ASCTB_release/ccf_Small_intestine_graph.pdf
diff --git a/graphs/last_official_ASCTB_release/ccf_Spleen_graph.pdf b/graphs/last_official_ASCTB_release/ccf_Spleen_graph.pdf
diff --git a/graphs/last_official_ASCTB_release/ccf_Thymus_graph.pdf b/graphs/last_official_ASCTB_release/ccf_Thymus_graph.pdf
diff --git a/graphs/last_official_ASCTB_release/ccf_Ureter_graph.pdf b/graphs/last_official_ASCTB_release/ccf_Ureter_graph.pdf
diff --git a/graphs/last_official_ASCTB_release/ccf_Urinary_bladder_graph.pdf b/graphs/last_official_ASCTB_release/ccf_Urinary_bladder_graph.pdf
diff --git a/graphs/last_official_ASCTB_release/ccf_Uterus_graph.pdf b/graphs/last_official_ASCTB_release/ccf_Uterus_graph.pdf
diff --git a/logs/Blood_vasculature_AS_has_part_CT_log.tsv b/logs/Blood_vasculature_AS_has_part_CT_log.tsv
diff --git a/logs/Heart_AS_CT_strict_log.tsv b/logs/Heart_AS_CT_strict_log.tsv
@@ -1,51 +1,49 @@
 s	slabel	user_slabel	o	olabel	user_olabel
-CL:0000057	fibroblast	fibroblast	UBERON:0011820	atrioventricular region	atrioventricular region
+CL:0000057	fibroblast	fibroblast	UBERON:0001625	right coronary artery	right coronary artery
 CL:0000057	fibroblast	fibroblast	UBERON:0002078	right cardiac atrium	right cardiac atrium
-CL:0000057	fibroblast	fibroblast	UBERON:0002080	heart right ventricle	heart right ventricle
+CL:0000057	fibroblast	fibroblast	UBERON:0005438	coronary sinus	coronary sinus
 CL:0000057	fibroblast	fibroblast	UBERON:0002348	Epicardium	epicardium
-CL:0000057	fibroblast	fibroblast	UBERON:0002049	vasculature	vasculature
 CL:0000057	fibroblast	fibroblast	UBERON:0002094	interventricular septum	interventricular septum
 CL:0000057	fibroblast	fibroblast	UBERON:0006958	great vein of heart	great cardiac vein
-CL:0000057	fibroblast	fibroblast	UBERON:0035374	small cardiac vein	small cardiac vein
-CL:0000057	fibroblast	fibroblast	UBERON:0001625	right coronary artery	right coronary artery
 CL:0000057	fibroblast	fibroblast	UBERON:0002084	heart left ventricle	heart left ventricle
-CL:0000057	fibroblast	fibroblast	UBERON:0035422	circumflex branch of left coronary artery	circumflex branch of left coronary artery
 CL:0000057	fibroblast	fibroblast	UBERON:0009687	middle cardiac vein	middle cardiac vein
-CL:0000057	fibroblast	fibroblast	UBERON:0005438	coronary sinus	coronary sinus
-CL:0000071	blood vessel endothelial cell	blood vessel endothelial cell	UBERON:0002080	heart right ventricle	heart right ventricle
+CL:0000057	fibroblast	fibroblast	UBERON:0035374	small cardiac vein	small cardiac vein
+CL:0000057	fibroblast	fibroblast	UBERON:0002080	heart right ventricle	heart right ventricle
+CL:0000057	fibroblast	fibroblast	UBERON:0011820	atrioventricular region	atrioventricular region
+CL:0000057	fibroblast	fibroblast	UBERON:0035422	circumflex branch of left coronary artery	circumflex branch of left coronary artery
+CL:0000057	fibroblast	fibroblast	UBERON:0002049	vasculature	vasculature
+CL:0000071	blood vessel endothelial cell	blood vessel endothelial cell	UBERON:0002084	heart left ventricle	heart left ventricle
+CL:0000071	blood vessel endothelial cell	blood vessel endothelial cell	UBERON:0002094	interventricular septum	interventricular septum
+CL:0000071	blood vessel endothelial cell	blood vessel endothelial cell	UBERON:0006958	great vein of heart	great cardiac vein
+CL:0000071	blood vessel endothelial cell	blood vessel endothelial cell	UBERON:0002079	left cardiac atrium	left cardiac atrium
 CL:0000071	blood vessel endothelial cell	blood vessel endothelial cell	UBERON:0002080	heart right ventricle	heart right ventricle
 CL:0000071	blood vessel endothelial cell	blood vessel endothelial cell	UBERON:0009687	middle cardiac vein	middle cardiac vein
-CL:0000071	blood vessel endothelial cell	blood vessel endothelial cell	UBERON:0002049	vasculature	vasculature
+CL:0000071	blood vessel endothelial cell	blood vessel endothelial cell	UBERON:0002348	Epicardium	epicardium
+CL:0000071	blood vessel endothelial cell	blood vessel endothelial cell	UBERON:0002137	Aortic valve	Aortic valve
 CL:0000071	blood vessel endothelial cell	blood vessel endothelial cell	UBERON:0002134	Tricuspid valve	Tricuspid valve
 CL:0000071	blood vessel endothelial cell	blood vessel endothelial cell	UBERON:0002146	Pulmonary Valve	Pulmonary Valve
+CL:0000071	blood vessel endothelial cell	blood vessel endothelial cell	UBERON:0002080	heart right ventricle	heart right ventricle
 CL:0000071	blood vessel endothelial cell	blood vessel endothelial cell	UBERON:0002135	Mitral valve	Mitral valve
-CL:0000071	blood vessel endothelial cell	blood vessel endothelial cell	UBERON:0002137	Aortic valve	Aortic valve
-CL:0000071	blood vessel endothelial cell	blood vessel endothelial cell	UBERON:0002094	interventricular septum	interventricular septum
-CL:0000071	blood vessel endothelial cell	blood vessel endothelial cell	UBERON:0006958	great vein of heart	great cardiac vein
-CL:0000071	blood vessel endothelial cell	blood vessel endothelial cell	UBERON:0002348	Epicardium	epicardium
-CL:0000071	blood vessel endothelial cell	blood vessel endothelial cell	UBERON:0002084	heart left ventricle	heart left ventricle
-CL:0000071	blood vessel endothelial cell	blood vessel endothelial cell	UBERON:0002079	left cardiac atrium	left cardiac atrium
 CL:0000077	mesothelial cell	mesothelial cell	UBERON:0002348	Epicardium	epicardium
+CL:0000136	fat cell	fat cell	UBERON:0002352	atrioventricular node	atrioventricular node
+CL:0000136	fat cell	fat cell	UBERON:0006566	left ventricle myocardium	left ventricle myocardium
 CL:0000136	fat cell	fat cell	UBERON:0002094	interventricular septum	interventricular septum
 CL:0000136	fat cell	fat cell	UBERON:0002079	left cardiac atrium	left cardiac atrium
-CL:0000136	fat cell	fat cell	UBERON:0006566	left ventricle myocardium	left ventricle myocardium
 CL:0000136	fat cell	fat cell	UBERON:0002080	heart right ventricle	heart right ventricle
 CL:0000136	fat cell	fat cell	UBERON:0002078	right cardiac atrium	right cardiac atrium
-CL:0000136	fat cell	fat cell	UBERON:0002352	atrioventricular node	atrioventricular node
-CL:0000235	macrophage	macrophage	UBERON:0002078	right cardiac atrium	right cardiac atrium
-CL:0000235	macrophage	macrophage	UBERON:0002348	Epicardium	epicardium
-CL:0000235	macrophage	macrophage	UBERON:0002094	interventricular septum	interventricular septum
 CL:0000235	macrophage	macrophage	UBERON:0002079	left cardiac atrium	left cardiac atrium
 CL:0000235	macrophage	macrophage	UBERON:0006566	left ventricle myocardium	left ventricle myocardium
-CL:0000235	macrophage	macrophage	UBERON:0006567	right ventricle myocardium	right ventricle myocardium
+CL:0000235	macrophage	macrophage	UBERON:0002094	interventricular septum	interventricular septum
+CL:0000235	macrophage	macrophage	UBERON:0002348	Epicardium	epicardium
+CL:0000235	macrophage	macrophage	UBERON:0002078	right cardiac atrium	right cardiac atrium
 CL:0000235	macrophage	macrophage	UBERON:0002080	heart right ventricle	heart right ventricle
+CL:0000235	macrophage	macrophage	UBERON:0006567	right ventricle myocardium	right ventricle myocardium
 CL:0000359	vascular associated smooth muscle cell	vascular associated smooth muscle cell	UBERON:0002079	left cardiac atrium	left cardiac atrium
 CL:0000359	vascular associated smooth muscle cell	vascular associated smooth muscle cell	UBERON:0005438	coronary sinus	coronary sinus
-CL:0000359	vascular associated smooth muscle cell	vascular associated smooth muscle cell	UBERON:0002049	vasculature	vasculature
-CL:0000359	vascular associated smooth muscle cell	vascular associated smooth muscle cell	UBERON:0002348	Epicardium	epicardium
 CL:0000359	vascular associated smooth muscle cell	vascular associated smooth muscle cell	UBERON:0002080	heart right ventricle	heart right ventricle
-CL:0000542	lymphocyte	lymphocyte	UBERON:0002080	heart right ventricle	heart right ventricle
+CL:0000359	vascular associated smooth muscle cell	vascular associated smooth muscle cell	UBERON:0002348	Epicardium	epicardium
 CL:0000542	lymphocyte	lymphocyte	UBERON:0002094	interventricular septum	interventricular septum
+CL:0000542	lymphocyte	lymphocyte	UBERON:0002080	heart right ventricle	heart right ventricle
 CL:0000542	lymphocyte	lymphocyte	UBERON:0002348	Epicardium	epicardium
 CL:0000542	lymphocyte	lymphocyte	UBERON:0006566	left ventricle myocardium	left ventricle myocardium
 CL:0000542	lymphocyte	lymphocyte	UBERON:0002079	left cardiac atrium	left cardiac atrium

diff --git a/logs/Heart_AS_has_part_CT_log.tsv b/logs/Heart_AS_has_part_CT_log.tsv
@@ -1,26 +1,11 @@
 s	slabel	user_slabel	o	olabel	user_olabel
-CL:0000057	fibroblast	fibroblast	UBERON:0002078	right cardiac atrium	right cardiac atrium
 CL:0000057	fibroblast	fibroblast	UBERON:0002049	vasculature	vasculature
-CL:0000057	fibroblast	fibroblast	UBERON:0002080	heart right ventricle	heart right ventricle
-CL:0000057	fibroblast	fibroblast	UBERON:0002348	Epicardium	epicardium
-CL:0000057	fibroblast	fibroblast	UBERON:0006958	great vein of heart	great cardiac vein
-CL:0000057	fibroblast	fibroblast	UBERON:0002094	interventricular septum	interventricular septum
-CL:0000057	fibroblast	fibroblast	UBERON:0009687	middle cardiac vein	middle cardiac vein
-CL:0000071	blood vessel endothelial cell	blood vessel endothelial cell	UBERON:0002094	interventricular septum	interventricular septum
-CL:0000071	blood vessel endothelial cell	blood vessel endothelial cell	UBERON:0002080	heart right ventricle	heart right ventricle
-CL:0000071	blood vessel endothelial cell	blood vessel endothelial cell	UBERON:0002080	heart right ventricle	heart right ventricle
-CL:0000071	blood vessel endothelial cell	blood vessel endothelial cell	UBERON:0009687	middle cardiac vein	middle cardiac vein
-CL:0000071	blood vessel endothelial cell	blood vessel endothelial cell	UBERON:0002348	Epicardium	epicardium
 CL:0000071	blood vessel endothelial cell	blood vessel endothelial cell	UBERON:0006958	great vein of heart	great cardiac vein
-CL:0000071	blood vessel endothelial cell	blood vessel endothelial cell	UBERON:0002049	vasculature	vasculature
+CL:0000071	blood vessel endothelial cell	blood vessel endothelial cell	UBERON:0009687	middle cardiac vein	middle cardiac vein
 CL:0000077	mesothelial cell	mesothelial cell	UBERON:0002348	Epicardium	epicardium
-CL:0000136	fat cell	fat cell	UBERON:0002078	right cardiac atrium	right cardiac atrium
-CL:0000136	fat cell	fat cell	UBERON:0002094	interventricular septum	interventricular septum
-CL:0000136	fat cell	fat cell	UBERON:0006566	left ventricle myocardium	left ventricle myocardium
 CL:0000136	fat cell	fat cell	UBERON:0002080	heart right ventricle	heart right ventricle
-CL:0000746	cardiac muscle cell	cardiac muscle cell	UBERON:0002094	interventricular septum	interventricular septum
 CL:0000746	cardiac muscle cell	cardiac muscle cell	UBERON:0002078	right cardiac atrium	right cardiac atrium
-CL:0000746	cardiac muscle cell	cardiac muscle cell	UBERON:0002080	heart right ventricle	heart right ventricle
 CL:0000746	cardiac muscle cell	cardiac muscle cell	UBERON:0006566	left ventricle myocardium	left ventricle myocardium
+CL:0000746	cardiac muscle cell	cardiac muscle cell	UBERON:0002094	interventricular septum	interventricular septum
 CL:0000746	cardiac muscle cell	cardiac muscle cell	UBERON:0006567	right ventricle myocardium	right ventricle myocardium
 CL:0010008	cardiac endothelial cell	cardiac endothelial cell	UBERON:0002049	vasculature	vasculature