ccf-validation-tools/Small_intestine/comments/

[giscus[bot]]

ccf-validation-tools/Small_intestine/comments/

https://hubmapconsortium.github.io/ccf-validation-tools/Small_intestine/comments/

[emquardokus]

Fixed in Editable Small_Intestine_v1.2_DRAFT: https://docs.google.com/spreadsheets/d/1KMOjJj-bVAqo39KuIOo0SaIVRtW9-5C5Y65NwnXlGqw/edit#gid=247140941
Different labels:
In row 65, the term CL:0000186 to myofibroblast cell
In row 63, the term CL:0000115 to endothelial cell
Blank ontology ID:
These will nee more scrutiny for location specific terms which have now been added to uberon since table was originally made.
Terms from another ontology
FMA:7206 only has 4 numbers after the colon, but is a valid FMA ID despite validation report stating "N is a number and it should have exact 5 number after the colon."
Rows 55-96 FMA:7206 duodenum was replaced with superior part of duodenum FMA:14926; Uberon does not provide sub-regions of duodenum.

[emquardokus]

Blank ontology ID
Rows 13-39 added specific Mucosa of duodenal ampulla FMA:17101; this term is not present in uberon
Rows 40-44 added specific Submucosa of duodenal ampulla FMA:17107; this term is not present in uberon
Rows 45-51 added specific Muscle layer of duodenal ampulla FMA:17113; Muscle layer of duodenal ampulla FMA:17113
Rows 213-219 added specific muscularis propria Muscle layer of ascending part of duodenum FMA:17116

Terms from another ontology:
Rows 97-138 uberon does not contain all of the different sections of the duodenum, whereas FMA ontology does, which is why this was chosen: descending part of duodenum FMA:14928.
Rows 139-180 uberon does not contain all of the different sections of the duodenum, whereas FMA ontology does, which is why this was chosen:horizontal part of duodenum FMA:14929
Rows 181-222 uberon does not contain all of the different sections of the duodenum, whereas FMA ontology does, which is why this was chosen: ascending part of duodenum FMA:14930

[anitacaron]

New terms in the ontology:
Small intestine : jejunum lamina propria (UBERON:8600034)
Small intestine : ileum lamina propria (UBERON:8600035)