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Chris-Csonka authored Oct 4, 2024
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<h3>HuBMAP Data</h3>

&nbsp;<h4>Developers</h4>
<h4>Developers</h4>

&nbsp;&nbsp;[Search API](https://smart-api.info/ui/7aaf02b838022d564da776b03f357158)
&nbsp;[Search API](https://smart-api.info/ui/7aaf02b838022d564da776b03f357158)

&nbsp;&nbsp;[Parameterized Search - PS](https://docs.hubmapconsortium.org/param-search)
&nbsp;[Parameterized Search - PS](https://docs.hubmapconsortium.org/param-search)

&nbsp;&nbsp;&nbsp;[PS Tutorial](https://github.com/hubmapconsortium/search-api/blob/main/examples/Parameter%20Search%20and%20Download%20Tutorial.ipynb)

&nbsp;&nbsp;[Entity API](https://smart-api.info/ui/0065e419668f3336a40d1f5ab89c6ba3)
&nbsp;[Entity API](https://smart-api.info/ui/0065e419668f3336a40d1f5ab89c6ba3)

&nbsp;&nbsp;[Metadata Attributes](https://docs.hubmapconsortium.org/assays/metadata/)
&nbsp;[Metadata Attributes](https://docs.hubmapconsortium.org/assays/metadata/)

&nbsp;<h4>Other Stakeholders</h4>
<h4>Other Stakeholders</h4>

&nbsp;&nbsp;[View / Download Data](https://docs.hubmapconsortium.org/how-to-access-data)
&nbsp;[View / Download Data](https://docs.hubmapconsortium.org/how-to-access-data)

&nbsp;&nbsp;[HuBMAP FAQ](https://docs.hubmapconsortium.org/faq)
&nbsp;[HuBMAP FAQ](https://docs.hubmapconsortium.org/faq)

&nbsp;&nbsp;[About HuBMAP](https://docs.hubmapconsortium.org/about)
&nbsp;[About HuBMAP](https://docs.hubmapconsortium.org/about)

&nbsp;&nbsp;<details><summary><b>Training Materials</b></summary>
<details><summary><b>Training Materials</b></summary>

[Visible Human MOOC](https://expand.iu.edu/browse/sice/cns/courses/hubmap-visible-human-mooc)
&nbsp;&nbsp;[Visible Human MOOC](https://expand.iu.edu/browse/sice/cns/courses/hubmap-visible-human-mooc)

[Intro to RNA-Seq Analysis](https://github.com/hubmapconsortium/hubmap-data-exploration-workshop/blob/main/HuBMAP_scRNAseq_HBM538_PHSC_677_Bridges2_Jupyter_Notebook_version_02.ipynb)
&nbsp;&nbsp;[Intro to RNA-Seq Analysis](https://github.com/hubmapconsortium/hubmap-data-exploration-workshop/blob/main/HuBMAP_scRNAseq_HBM538_PHSC_677_Bridges2_Jupyter_Notebook_version_02.ipynb)

[Diagramming Marker Genes](https://github.com/hubmapconsortium/hubmap-data-exploration-workshop/blob/main/HuBMAP_Gene_Ontology_Enrichment_Analysis_(GOEA)_with_goatools_HBM538_PHSC_677.ipynb)
&nbsp;&nbsp;[Diagramming Marker Genes](https://github.com/hubmapconsortium/hubmap-data-exploration-workshop/blob/main/HuBMAP_Gene_Ontology_Enrichment_Analysis_(GOEA)_with_goatools_HBM538_PHSC_677.ipynb)

[Protein Interactions](https://github.com/hubmapconsortium/hubmap-data-exploration-workshop/blob/main/HuBMAP_String_Database_protein_protein_interaction_networks_version_03_HBM538_PHSC_677.ipynb)
&nbsp;&nbsp;[Protein Interactions](https://github.com/hubmapconsortium/hubmap-data-exploration-workshop/blob/main/HuBMAP_String_Database_protein_protein_interaction_networks_version_03_HBM538_PHSC_677.ipynb)

[Gene Ontology Enrichment](https://github.com/hubmapconsortium/hubmap-data-exploration-workshop/blob/main/HuBMAP_Gene_Ontology_Enrichment_Analysis_(GOEA)_with_goatools_HBM538_PHSC_677.ipynb)
&nbsp;&nbsp;[Gene Ontology Enrichment](https://github.com/hubmapconsortium/hubmap-data-exploration-workshop/blob/main/HuBMAP_Gene_Ontology_Enrichment_Analysis_(GOEA)_with_goatools_HBM538_PHSC_677.ipynb)

<hr />

</details>

&nbsp;&nbsp;[HuBMAP Publications](https://hubmapconsortium.org/featured-publications/)
&nbsp;[HuBMAP Publications](https://hubmapconsortium.org/featured-publications/)

<h3>HuBMAP Tools</h3>

&nbsp;&nbsp;[Human Reference Atlas (HRA)](https://humanatlas.io")
&nbsp;[Human Reference Atlas (HRA)](https://humanatlas.io")

&nbsp;&nbsp;<details><summary><b>More About the HRA</b></summary>
<details><summary><b>More About the HRA</b></summary>

[HRA Video Intro](https://www.youtube.com/watch?v=DDmP_7vDy-o)
&nbsp;&nbsp;[HRA Video Intro](https://www.youtube.com/watch?v=DDmP_7vDy-o)

[Latest HRA Release Notes](https://humanatlas.io/release-notes/v2.1)
&nbsp;&nbsp;[Latest HRA Release Notes](https://humanatlas.io/release-notes/v2.1)

<hr />

</details>

&nbsp;&nbsp;<details><summary><b>More HRA Tools</b></summary>
<details><summary><b>More HRA Tools</b></summary>

[ASCT+B Reporter](https://humanatlas.io/asctb-reporter)
&nbsp;&nbsp;[ASCT+B Reporter](https://humanatlas.io/asctb-reporter)

[Cell Population Graphs](https://humanatlas.io/cell-population-graphs)
&nbsp;&nbsp;[Cell Population Graphs](https://humanatlas.io/cell-population-graphs)

[RUI](https://humanatlas.io/registration-user-interface)
&nbsp;&nbsp;[RUI](https://humanatlas.io/registration-user-interface)

[EUI](https://humanatlas.io/exploration-user-interface)
&nbsp;&nbsp;[EUI](https://humanatlas.io/exploration-user-interface)

[VR Organ Gallery](https://humanatlas.io/organ-gallery-in-vr)
&nbsp;&nbsp;[VR Organ Gallery](https://humanatlas.io/organ-gallery-in-vr)

[Millitome](https://humanatlas.io/millitome)
&nbsp;&nbsp;[Millitome](https://humanatlas.io/millitome)

[HRA APIs](https://humanatlas.io/api)
&nbsp;&nbsp;[HRA APIs](https://humanatlas.io/api)

<hr />

</details>

&nbsp;&nbsp;[Azimuth](https://azimuth.hubmapconsortium.org/?_gl=1*w6lgc7*_ga*MjAwNDc0MTM0OC4xNzE0NzUzMTY4*_ga_N77K0HBGRV*MTcyMjQ4NDIwNi4zMzkuMC4xNzIyNDg0MjA2LjAuMC4w)
&nbsp;[Azimuth](https://azimuth.hubmapconsortium.org/?_gl=1*w6lgc7*_ga*MjAwNDc0MTM0OC4xNzE0NzUzMTY4*_ga_N77K0HBGRV*MTcyMjQ4NDIwNi4zMzkuMC4xNzIyNDg0MjA2LjAuMC4w)

&nbsp;&nbsp;[FUSION](http://fusion.hubmapconsortium.org/)
&nbsp;[FUSION](http://fusion.hubmapconsortium.org/)

&nbsp;&nbsp;[STELLAR](https://snap.stanford.edu/stellar/)
&nbsp;[STELLAR](https://snap.stanford.edu/stellar/)

&nbsp;&nbsp;[Vitessce](https://vitessce.io/)
&nbsp;[Vitessce](https://vitessce.io/)

<details><summary><b>More for Vitesse</b></summary>

&nbsp;&nbsp;&nbsp;[Documentation](https://vitessce.io/docs/)
&nbsp;&nbsp;[Documentation](https://vitessce.io/docs/)

&nbsp;&nbsp;&nbsp;[Tutorials](https://vitessce.io/docs/tutorials/)
&nbsp;&nbsp;[Tutorials](https://vitessce.io/docs/tutorials/)

<hr />

</details>

&nbsp;&nbsp;[HuBMAP Pipelines](http://hubmap.scs.cmu.edu/documentation/)
&nbsp;[HuBMAP Pipelines](http://hubmap.scs.cmu.edu/documentation/)

&nbsp;&nbsp;[HuBMAP Workspaces](https://portal.hubmapconsortium.org/workspaces)
&nbsp;[HuBMAP Workspaces](https://portal.hubmapconsortium.org/workspaces)

&nbsp;&nbsp;&nbsp;[Workspaces Tutorials](https://portal.hubmapconsortium.org/tutorials/workspaces)

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