diff --git a/docs/_layouts/external-TOC2.html b/docs/_layouts/external-TOC2.html index a8c0820..8585952 100644 --- a/docs/_layouts/external-TOC2.html +++ b/docs/_layouts/external-TOC2.html @@ -34,99 +34,99 @@

HuBMAP Data

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Developers

+

Developers

-  [Search API](https://smart-api.info/ui/7aaf02b838022d564da776b03f357158) + [Search API](https://smart-api.info/ui/7aaf02b838022d564da776b03f357158) -  [Parameterized Search - PS](https://docs.hubmapconsortium.org/param-search) + [Parameterized Search - PS](https://docs.hubmapconsortium.org/param-search)    [PS Tutorial](https://github.com/hubmapconsortium/search-api/blob/main/examples/Parameter%20Search%20and%20Download%20Tutorial.ipynb) -  [Entity API](https://smart-api.info/ui/0065e419668f3336a40d1f5ab89c6ba3) + [Entity API](https://smart-api.info/ui/0065e419668f3336a40d1f5ab89c6ba3) -  [Metadata Attributes](https://docs.hubmapconsortium.org/assays/metadata/) + [Metadata Attributes](https://docs.hubmapconsortium.org/assays/metadata/) - 

Other Stakeholders

+

Other Stakeholders

-  [View / Download Data](https://docs.hubmapconsortium.org/how-to-access-data) + [View / Download Data](https://docs.hubmapconsortium.org/how-to-access-data) -  [HuBMAP FAQ](https://docs.hubmapconsortium.org/faq) + [HuBMAP FAQ](https://docs.hubmapconsortium.org/faq) -  [About HuBMAP](https://docs.hubmapconsortium.org/about) + [About HuBMAP](https://docs.hubmapconsortium.org/about) -  
Training Materials +
Training Materials -[Visible Human MOOC](https://expand.iu.edu/browse/sice/cns/courses/hubmap-visible-human-mooc) +  [Visible Human MOOC](https://expand.iu.edu/browse/sice/cns/courses/hubmap-visible-human-mooc) -[Intro to RNA-Seq Analysis](https://github.com/hubmapconsortium/hubmap-data-exploration-workshop/blob/main/HuBMAP_scRNAseq_HBM538_PHSC_677_Bridges2_Jupyter_Notebook_version_02.ipynb) +  [Intro to RNA-Seq Analysis](https://github.com/hubmapconsortium/hubmap-data-exploration-workshop/blob/main/HuBMAP_scRNAseq_HBM538_PHSC_677_Bridges2_Jupyter_Notebook_version_02.ipynb) -[Diagramming Marker Genes](https://github.com/hubmapconsortium/hubmap-data-exploration-workshop/blob/main/HuBMAP_Gene_Ontology_Enrichment_Analysis_(GOEA)_with_goatools_HBM538_PHSC_677.ipynb) +  [Diagramming Marker Genes](https://github.com/hubmapconsortium/hubmap-data-exploration-workshop/blob/main/HuBMAP_Gene_Ontology_Enrichment_Analysis_(GOEA)_with_goatools_HBM538_PHSC_677.ipynb) -[Protein Interactions](https://github.com/hubmapconsortium/hubmap-data-exploration-workshop/blob/main/HuBMAP_String_Database_protein_protein_interaction_networks_version_03_HBM538_PHSC_677.ipynb) +  [Protein Interactions](https://github.com/hubmapconsortium/hubmap-data-exploration-workshop/blob/main/HuBMAP_String_Database_protein_protein_interaction_networks_version_03_HBM538_PHSC_677.ipynb) -[Gene Ontology Enrichment](https://github.com/hubmapconsortium/hubmap-data-exploration-workshop/blob/main/HuBMAP_Gene_Ontology_Enrichment_Analysis_(GOEA)_with_goatools_HBM538_PHSC_677.ipynb) +  [Gene Ontology Enrichment](https://github.com/hubmapconsortium/hubmap-data-exploration-workshop/blob/main/HuBMAP_Gene_Ontology_Enrichment_Analysis_(GOEA)_with_goatools_HBM538_PHSC_677.ipynb)
-  [HuBMAP Publications](https://hubmapconsortium.org/featured-publications/) + [HuBMAP Publications](https://hubmapconsortium.org/featured-publications/)

HuBMAP Tools

-  [Human Reference Atlas (HRA)](https://humanatlas.io") + [Human Reference Atlas (HRA)](https://humanatlas.io") -  
More About the HRA +
More About the HRA -[HRA Video Intro](https://www.youtube.com/watch?v=DDmP_7vDy-o) +  [HRA Video Intro](https://www.youtube.com/watch?v=DDmP_7vDy-o) -[Latest HRA Release Notes](https://humanatlas.io/release-notes/v2.1) +  [Latest HRA Release Notes](https://humanatlas.io/release-notes/v2.1)
-  
More HRA Tools +
More HRA Tools -[ASCT+B Reporter](https://humanatlas.io/asctb-reporter) +  [ASCT+B Reporter](https://humanatlas.io/asctb-reporter) -[Cell Population Graphs](https://humanatlas.io/cell-population-graphs) +  [Cell Population Graphs](https://humanatlas.io/cell-population-graphs) -[RUI](https://humanatlas.io/registration-user-interface) +  [RUI](https://humanatlas.io/registration-user-interface) -[EUI](https://humanatlas.io/exploration-user-interface) +  [EUI](https://humanatlas.io/exploration-user-interface) -[VR Organ Gallery](https://humanatlas.io/organ-gallery-in-vr) +  [VR Organ Gallery](https://humanatlas.io/organ-gallery-in-vr) -[Millitome](https://humanatlas.io/millitome) +  [Millitome](https://humanatlas.io/millitome) -[HRA APIs](https://humanatlas.io/api) +  [HRA APIs](https://humanatlas.io/api)
-  [Azimuth](https://azimuth.hubmapconsortium.org/?_gl=1*w6lgc7*_ga*MjAwNDc0MTM0OC4xNzE0NzUzMTY4*_ga_N77K0HBGRV*MTcyMjQ4NDIwNi4zMzkuMC4xNzIyNDg0MjA2LjAuMC4w) + [Azimuth](https://azimuth.hubmapconsortium.org/?_gl=1*w6lgc7*_ga*MjAwNDc0MTM0OC4xNzE0NzUzMTY4*_ga_N77K0HBGRV*MTcyMjQ4NDIwNi4zMzkuMC4xNzIyNDg0MjA2LjAuMC4w) -  [FUSION](http://fusion.hubmapconsortium.org/) + [FUSION](http://fusion.hubmapconsortium.org/) -  [STELLAR](https://snap.stanford.edu/stellar/) + [STELLAR](https://snap.stanford.edu/stellar/) -  [Vitessce](https://vitessce.io/) + [Vitessce](https://vitessce.io/)
More for Vitesse -   [Documentation](https://vitessce.io/docs/) +  [Documentation](https://vitessce.io/docs/) -   [Tutorials](https://vitessce.io/docs/tutorials/) +  [Tutorials](https://vitessce.io/docs/tutorials/)
-  [HuBMAP Pipelines](http://hubmap.scs.cmu.edu/documentation/) + [HuBMAP Pipelines](http://hubmap.scs.cmu.edu/documentation/) -  [HuBMAP Workspaces](https://portal.hubmapconsortium.org/workspaces) + [HuBMAP Workspaces](https://portal.hubmapconsortium.org/workspaces)    [Workspaces Tutorials](https://portal.hubmapconsortium.org/tutorials/workspaces)