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- - HuBMAP Application-specific APIs (**Not intended for use by external developers or other external users**):
- - Ingest API: Supports writing data and metadata to HuBMAP, used by both TMCs and the HIVE. Links to the SmartAPI site where this API is registered as well as documentation for the API.
- - UUID API: Supports donor and tissue sample registration, data submission, and collection of provenance information via the Ingest UI. Links to GitHub documentation for this API.
- - Ontology (UBKG) API: Accesses an instance of a [neo4j] Unified Biomedical Knowledge Graph (UBKG).
- - This UBKG links infomation from a variety of biomedical vocabulary systems.
- - The HuBMAP UBKG instance includes HuBMAP’s application ontology that represents the HuBMAP operational model.
- - Links to the SmartAPI site where this API is registered as well as documentation for the API.
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-# Data Submitters
- - Data Submission Guide: Documents the key steps for TMCs, Assay teams, and others who upload data to the HuBMAP.
- - Metadata/data schemas: HuBMAP metadata documentation and submission specifications.
- - See the HuBMAP Data Upload Guidelines for the latest assay metadata options and specifications.
- - Metadata Spreadsheet Validator: Use this tool to validate your metadata spreadsheet (template).
- - Help documentation for the Metadata Spreadsheet Validator.
- - HuBMAP Microscope Metadata entry form: Submit Microscopy Metadata in compliance with the NBO-Q metadata model.
- - HuBMAP Microscope Hardware Collection: List of Microscopy Metadata collected to date.
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-# Consortium Members
- - HuBMAP Member Portal: Find information about how to navigate the consortium, including the calendar, member directory, etc.
- - SOPs
- - Governance: The HuBMAP Steering Committee and Working Groups.
- - HuBMAP Consortium Google Drive: A shared resource.
- - Document Management Guide: For the HuBMAP Consortium Google Drive.
- - HuBMAP Calendar: A web calendar that combines all shared, internal Consortium events.
- - Using Google Groups with Google Calendar
- - other Resources
-Developer Tools (linked from the HuBMAP Consortium website):
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- HIVE Infrastructure accounts -
- Access to HuBMAP AWS -
- DockerHub -
- Access to HuBMAP Folders via Globus -
- HuBMAP workspace in GitHub
- HuBMAP workspace in protocols.io -
- Data Authentication -