From 5d007ce246adbc0b44b68b9d78d6aee9f5172d06 Mon Sep 17 00:00:00 2001 From: LibbyUX <97060856+LibbyUX@users.noreply.github.com> Date: Thu, 1 Aug 2024 09:59:17 -0400 Subject: [PATCH 1/2] Add 3D ref total + link to HRA LOD Server Per Katy, added 3D ref total. Per Andi, added text. Per Bruce, added purl URL. --- .../src/assets/content/pages/3d-reference-library.yaml | 2 ++ 1 file changed, 2 insertions(+) diff --git a/apps/humanatlas.io/src/assets/content/pages/3d-reference-library.yaml b/apps/humanatlas.io/src/assets/content/pages/3d-reference-library.yaml index efe0b7bfe..971504aa9 100644 --- a/apps/humanatlas.io/src/assets/content/pages/3d-reference-library.yaml +++ b/apps/humanatlas.io/src/assets/content/pages/3d-reference-library.yaml @@ -33,6 +33,8 @@ For selected organs, 3D extraction site objects are provided. Some extraction sites resemble geometric objects (e.g., cuboids for heart) while others take the shape of one or more whole or partial anatomical structures (e.g., in spleen). The 3D extraction sites do not restrict registration to specific regions, instead they provide “expert defined landmarks” to help guide tissue registration. The extraction site objects are also used for automatic semantic annotation of tissue samples via collision detection during registration. + In the 65 3D Reference Objects of HRA v2.1, a total of 1,222 modeled 3D structures are tagged with an ontology ID in UBERON or FMA. The crosswalk that links 3D structures (called nodes in the crosswalk) to their ontology ID is available on the HRA LOD Server. + - type: sop-links sopData: sopTitle: Standard Operating Procedures (SOP) From 6e2a0a754688a6d9101c7ad1261fef8a133943c5 Mon Sep 17 00:00:00 2001 From: LibbyUX <97060856+LibbyUX@users.noreply.github.com> Date: Thu, 1 Aug 2024 10:08:32 -0400 Subject: [PATCH 2/2] Add 3D ref total + link to HRA LOD Server + fixes Removed italics on HRA LOD Server link text. --- .../src/assets/content/pages/3d-reference-library.yaml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/apps/humanatlas.io/src/assets/content/pages/3d-reference-library.yaml b/apps/humanatlas.io/src/assets/content/pages/3d-reference-library.yaml index 971504aa9..604f03190 100644 --- a/apps/humanatlas.io/src/assets/content/pages/3d-reference-library.yaml +++ b/apps/humanatlas.io/src/assets/content/pages/3d-reference-library.yaml @@ -33,7 +33,7 @@ For selected organs, 3D extraction site objects are provided. Some extraction sites resemble geometric objects (e.g., cuboids for heart) while others take the shape of one or more whole or partial anatomical structures (e.g., in spleen). The 3D extraction sites do not restrict registration to specific regions, instead they provide “expert defined landmarks” to help guide tissue registration. The extraction site objects are also used for automatic semantic annotation of tissue samples via collision detection during registration. - In the 65 3D Reference Objects of HRA v2.1, a total of 1,222 modeled 3D structures are tagged with an ontology ID in UBERON or FMA. The crosswalk that links 3D structures (called nodes in the crosswalk) to their ontology ID is available on the HRA LOD Server. + In the 65 3D Reference Objects of HRA v2.1, a total of 1,222 modeled 3D structures are tagged with an ontology ID in UBERON or FMA. The crosswalk that links 3D structures (called nodes in the crosswalk) to their ontology ID is available on the HRA LOD Server. - type: sop-links sopData: