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Pull requests: hubmapconsortium/ingest-pipeline

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Pull requests list

Pass thread count to CWL
#966 opened Oct 31, 2024 by jswelling • Draft
Sfd5311/multiome snareseq fix
#933 opened Oct 7, 2024 by SFD5311 Loading…
Bump deepcelltypes to v1.0.2
#931 opened Sep 25, 2024 by mruffalo Loading…
Sfd5311/alignment json
#928 opened Sep 17, 2024 by SFD5311 Loading…
SPRM v1.4.5
#927 opened Sep 16, 2024 by mruffalo Loading…
Add --data_dir to CODEX second stitching
#918 opened Aug 13, 2024 by mruffalo Loading…
Bump scikit-learn from 0.22 to 1.5.0 in /src/ingest-pipeline/airflow/dags/cwl/obsolete/salmon_rnaseq_10x/scanpy-analysis dependencies Pull requests that update a dependency file
#886 opened Jun 17, 2024 by dependabot bot Loading…
Bump authlib from 0.15.6 to 1.3.1 in /src/ingest-pipeline dependencies Pull requests that update a dependency file
#884 opened Jun 10, 2024 by dependabot bot Loading…
Bump requests from 2.27.1 to 2.32.0 in /src/ingest-pipeline dependencies Pull requests that update a dependency file
#875 opened May 21, 2024 by dependabot bot Loading…
Bump tqdm from 4.36.1 to 4.66.3 in /src/ingest-pipeline dependencies Pull requests that update a dependency file
#867 opened May 3, 2024 by dependabot bot Loading…
Jpuerto/example8 dag
#841 opened Feb 6, 2024 by jpuerto-psc Loading…
3
Welling/run background subtraction parallel control rebased
#719 opened Feb 17, 2023 by jswelling Loading…
Sfd5311/cells index
#294 opened Apr 12, 2021 by SFD5311 Loading…
WIP DAG for combined IMS/MxIF processing
#163 opened Sep 21, 2020 by mruffalo • Draft
Consolidate ome-tiff-pyramid DAGs
#146 opened Aug 25, 2020 by mruffalo • Draft
ProTip! What’s not been updated in a month: updated:<2024-09-30.