ruff.toml

exclude = [
    ".bzr",
    ".direnv",
    ".eggs",
    ".git",
    ".git-rewrite",
    ".hg",
    ".ipynb_checkpoints",
    ".mypy_cache",
    ".nox",
    ".pants.d",
    ".pyenv",
    ".pytest_cache",
    ".pytype",
    ".ruff_cache",
    ".svn",
    ".tox",
    ".venv",
    ".vscode",
    "__pypackages__",
    "_build",
    "buck-out",
    "build",
    "dist",
    "node_modules",
    "site-packages",
    "venv",
    "*.PHY",
    "*.md",
    "*.markdown",
]

line-length = 120

[lint]
select = ["E", "F", "B", "W", "I", "N", "UP", "A", "RUF", "PT", "NPY"]
# N801 allow classnames with multiple caps, e.g. DTWF_simulator
# N803,806,802 Allow capital varnames
# N812 Allow capital P for portion
# N813 Allow capital GeneticInheritanceGraphLibrary -> gigl
# E741 Allow "l" as var name
# PT011 allow pytest raises without match
ignore = ["N801", "N803", "N806", "N802", "E741", "PT011", "PT009", "N999", "N812", "N813"]

[lint.isort]
section-order = ["future", "standard-library", "third-party", "first-party", "local-folder"]