hyraxAbif.cabal

cabal-version:       2.2
name:                hyraxAbif
version:             0.2.4.5
synopsis:            Modules for parsing, generating and manipulating AB1 files.
homepage:            https://github.com/hyraxbio/hyraxAbif/#readme
license:             BSD-3-Clause OR Apache-2.0
license-file:        LICENSE
author:              HyraxBio
maintainer:          andre@hyraxbio.co.za
copyright:           2018-2020 HyraxBio
category:            Bioinformatics
build-type:          Simple
extra-source-files:  README.md
extra-doc-files:     docs/*.png
                   , docs/docs/*.png
description:         This library provides functionality for parsing, modifying, writing and generating ABIF files
                     <<data:image/png;base64,iVBORw0KGgoAAAANSUhEUgAAAEwAAABuCAMAAAC6LQUkAAAALVBMVEXA5+7/////53c9q1oVFhbCPzifzLVrv4RGguPX39ZFTluGhX6Ks/DSg1zdvnNa6pLqAAADlklEQVRo3u3XjZKjIAwAYD3+BIH3f9wjBCSJtnUd2725qeO6rtWvMSToTn9uXKYvdhXLSmXxSTLG8GPlQD2e8NN+eNVah0QwpZT7I68044LOb6SpJIShcUkMU+zCDGGltD+WTdu2qIuz5hz0iMwp5/h9JhFVizbVu0/j44wx0ZwplTMPDQJIeYcZAHG7JUwMQIXULrTtChpuX9vJATDI29oxB9nfDcF+ODOElVpwNDKKqbbsc5T3Q4xp61jLWdiwrFQdAXqfuVyUd1iqSqYJCFUbmMMbZPeZDuoMGQxw+5ZeZx1rIfHxTPv8b7XK62bt1ncKuoI9WuYLyxf7Yl/si/0+Bk9NiS1lkafDefIYPE/+ScwD5s9gInUenv1eYoFjFt4OLMemJR5g7ggLZ7B4BrO3Y/YCZu/FbFn5sVWvZX2BRcDiBczBSe6t2DS9FcPz+LGgrb2IeX+IhU9iy2nMe4ZBl4tOL1gpteU1pk9is8Rg/pFzUMX0bRj+/D+YP8A8Yn7D7AE2ITaJ6ayOqJhoa3kQzNVa41ipsfhhzCJmfxeziFkxA8HmORYPMds2O2zdMPcYixcw28J7GwbvEBxz92K+DSmbG9uQfgpbFnhSn8F8a4OGYVsKLAAWlquYEti6ao6pA0wjpi9gY0uns779GAbPw5swfOq8wnzHfMNaUfDm7NgkZiAxB7VxDE8xqFn4wleY7Zj9Tay1OOv01uL4a5vO9lidjmk/ncQsCbBhAbFwE1bnKYq5jjkxafTUPcKWQ8yTcXgL5ke50dKnLbD0SW8Rk4bAdMf0M6xPLYvsJt5P7f3nVmx+heE5HDPGmFswyFXDvJg0Wu7oKJIWwAaoLTARzJuUjHcUC2RUH2HhEMsml5VgdmD2GdbaJEzkHaiEVYIj70E/xSJpTcRIc/b/53CHGqQF4mgTipXsz8b8GBuVzbA0z+kK1oc8jtbMiOXRT/1ffUzeA2w5xIozz0V8gqlDbBulhWLQYhzzpOBY4Y+9cIApBfmHERj9pAemn2BbYgPB0h6je+cxr1bEklmVF62JMbJMbUMRaWKnjtX8Y9KsaAAcClb3rruR5iL2/BuDtWeMsqLMcJdhW5ALDX8ZGO4VzInKwCD5LNb3j7CeMkyazH/d58+kVnIx0PAxaR6rrCfNi5TVKDnWbjlqPZFvjNiZZmAtaSRl9Q/+htHkQGaxudWvM/0u4T6NEynDcTfnF70tD074C7p1S5o4ju7XAAAAAElFTkSuQmCC>>
                     .
                     Any AB1 file conforming to the standard at <http://www6.appliedbiosystems.com/support/software_community/ABIF_File_Format.pdf> should be supported.
                     .
                     This library also support generating a minimal ABIF file from a FASTA input sequence.
                     .
                     A basic terminal application that can dump and generate AB1s is included. See <https://github.com/hyraxbio/hyraxAbif/blob/master/app/Main.hs>
                     .
                     See
                     .
                     * "Hyrax.Abif.Generate" for generate ABIF files from FASTA inputs
                     * "Hyrax.Abif.Read" for parsing ABIF files
                     * "Hyrax.Abif.Write" for creating/updating ABIF files
                     * "Hyrax.Abif" for the core types
                     * "Examples" for examples

library
  ghc-options:         -Wall -Wincomplete-uni-patterns -Wincomplete-record-updates -Wimplicit-prelude -Wcompat -Wredundant-constraints -Wnoncanonical-monad-instances
  hs-source-dirs:      src
  exposed-modules:     Hyrax.Abif
                     , Hyrax.Abif.Read
                     , Hyrax.Abif.Write
                     , Hyrax.Abif.Generate
                     , Hyrax.Abif.Fasta
                     , Examples
                     , Examples.AddComment
                     , Examples.RemoveComments
                     , Examples.ReadAb1
  build-depends:       base            >= 4.9.1.0 && < 5
                     , verset          >= 0.0.1.8 && < 0.0.2.0
                     , binary          >= 0.8.9 && < 0.10
                     , bytestring      >= 0.11.3 && < 0.13
                     , directory       >= 1.3.6 && < 1.4
                     , filepath        >= 1.4.2 && < 1.6
                     , hscolour        >= 1.24.4 && < 1.26
                     , pretty-show     >= 1.10 && < 1.11
                     , text            >= 1.2.5 && < 2.2
  default-language:    Haskell2010


executable hyraxAbif-exe
  hs-source-dirs:      app
  main-is:             Main.hs
  ghc-options:         -threaded -rtsopts -with-rtsopts=-N -Wall -Wincomplete-uni-patterns -Wincomplete-record-updates -Wimplicit-prelude -Wcompat -Wredundant-constraints -Wnoncanonical-monad-instances
  build-depends:       base            >= 4.9.1.0 && < 5
                     , hyraxAbif
                     , verset          >= 0.0.1.8 && < 0.0.2.0
                     , text            >= 1.2.5 && < 2.2
                     , bytestring      >= 0.11.3 && < 0.13
                     , pretty-show     >= 1.10 && < 1.11
                     , hscolour        >= 1.24.4 && < 1.26
  default-language:    Haskell2010

test-suite hyraxAbif-test
  type:                exitcode-stdio-1.0
  hs-source-dirs:      test
  main-is:             Tests.hs
  build-depends:       base            >= 4.9.1.0  && < 5
                     , hyraxAbif
                     , verset          >= 0.0.1.8 && < 0.0.2.0
                     , text            >= 1.2.5 && < 2.2
                     , bytestring      >= 0.11.3 && < 0.13
                     , binary          >= 0.8.9 && < 0.10
                     , hedgehog        >= 1.2 && < 1.5
  other-modules:       AbifTests
                     , FastaTests
                     , Generators
  ghc-options:         -threaded -rtsopts -with-rtsopts=-N -Wall -Wincomplete-uni-patterns -Wincomplete-record-updates -Wimplicit-prelude -Wcompat -Wredundant-constraints -Wnoncanonical-monad-instances
  default-language:    Haskell2010

source-repository head
  type:     git
  location: https://github.com/hyraxbio/hyraxAbif