diff --git a/.eslintrc.cjs b/.eslintrc.cjs index e0588958..bf03ddf9 100644 --- a/.eslintrc.cjs +++ b/.eslintrc.cjs @@ -21,7 +21,7 @@ module.exports = { }, // Base config - extends: ["eslint:recommended"], + extends: ["eslint:recommended", "plugin:storybook/recommended"], overrides: [ // React diff --git a/.gitignore b/.gitignore index 1830b5e0..916549c8 100644 --- a/.gitignore +++ b/.gitignore @@ -21,3 +21,5 @@ Caddyfile /playwright-report/ /blob-report/ /playwright + +*storybook.log \ No newline at end of file diff --git a/.storybook/main.ts b/.storybook/main.ts new file mode 100644 index 00000000..2656a42f --- /dev/null +++ b/.storybook/main.ts @@ -0,0 +1,25 @@ +import type { StorybookConfig } from "@storybook/react-vite"; + +const config: StorybookConfig = { + stories: [ + "../stories/**/*.mdx", + "../stories/**/*.stories.@(js|jsx|mjs|ts|tsx)", + ], + addons: [ + "@storybook/addon-onboarding", + "@storybook/addon-links", + "@storybook/addon-essentials", + "@chromatic-com/storybook", + "@storybook/addon-interactions", + "@storybook/addon-themes", + ], + framework: { + name: "@storybook/react-vite", + options: {}, + }, + docs: { + autodocs: "tag", + }, + staticDirs: [{ from: "../stories/assets", to: "/assets" }], +}; +export default config; diff --git a/.storybook/preview.ts b/.storybook/preview.ts new file mode 100644 index 00000000..635e3113 --- /dev/null +++ b/.storybook/preview.ts @@ -0,0 +1,28 @@ +import type { Preview } from "@storybook/react"; +import { withThemeFromJSXProvider } from "@storybook/addon-themes"; +import { ThemeProvider } from "remix-themes"; +import "../app/tailwind.css"; + +const preview: Preview = { + parameters: { + controls: { + matchers: { + color: /(background|color)$/i, + date: /Date$/i, + }, + }, + }, +}; + +export default preview; + +export const decorators = [ + withThemeFromJSXProvider({ + themes: { + light: "light" as any, + dark: "dark" as any, + }, + defaultTheme: "light", + Provider: ThemeProvider, + }), +]; diff --git a/app/components/ui/popover.tsx b/app/components/ui/popover.tsx new file mode 100644 index 00000000..df1d58f2 --- /dev/null +++ b/app/components/ui/popover.tsx @@ -0,0 +1,29 @@ +import * as React from "react"; +import * as PopoverPrimitive from "@radix-ui/react-popover"; + +import { cn } from "~/lib/utils"; + +const Popover = PopoverPrimitive.Root; + +const PopoverTrigger = PopoverPrimitive.Trigger; + +const PopoverContent = React.forwardRef< + React.ElementRef, + React.ComponentPropsWithoutRef +>(({ className, align = "center", sideOffset = 4, ...props }, ref) => ( + + + +)); +PopoverContent.displayName = PopoverPrimitive.Content.displayName; + +export { Popover, PopoverTrigger, PopoverContent }; diff --git a/app/components/ui/spinner.tsx b/app/components/ui/spinner.tsx new file mode 100644 index 00000000..096d23d6 --- /dev/null +++ b/app/components/ui/spinner.tsx @@ -0,0 +1,54 @@ +/* From https://shadcnui-expansions.typeart.cc/docs/spinner */ +import React from "react"; + +import { cn } from "~/lib/utils"; +import { VariantProps, cva } from "class-variance-authority"; +import { Loader2 } from "lucide-react"; + +const spinnerVariants = cva("flex-col items-center justify-center", { + variants: { + show: { + true: "flex", + false: "hidden", + }, + }, + defaultVariants: { + show: true, + }, +}); + +const loaderVariants = cva("animate-spin text-primary", { + variants: { + size: { + small: "size-6", + medium: "size-8", + large: "size-12", + }, + }, + defaultVariants: { + size: "small", + }, +}); + +interface SpinnerContentProps + extends VariantProps, + VariantProps { + className?: string; + children?: React.ReactNode; + title?: string; +} + +export function Spinner({ + size, + show, + children, + className, + title = "Loading...", +}: SpinnerContentProps) { + return ( + + + {children} + + ); +} diff --git a/app/components/ui/toggle-group.tsx b/app/components/ui/toggle-group.tsx new file mode 100644 index 00000000..340c59bf --- /dev/null +++ b/app/components/ui/toggle-group.tsx @@ -0,0 +1,59 @@ +import * as React from "react"; +import * as ToggleGroupPrimitive from "@radix-ui/react-toggle-group"; +import { VariantProps } from "class-variance-authority"; + +import { cn } from "~/lib/utils"; +import { toggleVariants } from "~/components/ui/toggle"; + +const ToggleGroupContext = React.createContext< + VariantProps +>({ + size: "default", + variant: "default", +}); + +const ToggleGroup = React.forwardRef< + React.ElementRef, + React.ComponentPropsWithoutRef & + VariantProps +>(({ className, variant, size, children, ...props }, ref) => ( + + + {children} + + +)); + +ToggleGroup.displayName = ToggleGroupPrimitive.Root.displayName; + +const ToggleGroupItem = React.forwardRef< + React.ElementRef, + React.ComponentPropsWithoutRef & + VariantProps +>(({ className, children, variant, size, ...props }, ref) => { + const context = React.useContext(ToggleGroupContext); + + return ( + + {children} + + ); +}); + +ToggleGroupItem.displayName = ToggleGroupPrimitive.Item.displayName; + +export { ToggleGroup, ToggleGroupItem }; diff --git a/app/components/ui/toggle.tsx b/app/components/ui/toggle.tsx new file mode 100644 index 00000000..f7eb34f1 --- /dev/null +++ b/app/components/ui/toggle.tsx @@ -0,0 +1,43 @@ +import * as React from "react"; +import * as TogglePrimitive from "@radix-ui/react-toggle"; +import { cva, type VariantProps } from "class-variance-authority"; + +import { cn } from "~/lib/utils"; + +const toggleVariants = cva( + "inline-flex items-center justify-center rounded-md text-sm font-medium ring-offset-background transition-colors hover:bg-muted hover:text-muted-foreground focus-visible:outline-none focus-visible:ring-2 focus-visible:ring-ring focus-visible:ring-offset-2 disabled:pointer-events-none disabled:opacity-50 data-[state=on]:bg-accent data-[state=on]:text-accent-foreground", + { + variants: { + variant: { + default: "bg-transparent", + outline: + "border border-input bg-transparent hover:bg-accent hover:text-accent-foreground", + }, + size: { + default: "h-10 px-3", + sm: "h-9 px-2.5", + lg: "h-11 px-5", + }, + }, + defaultVariants: { + variant: "default", + size: "default", + }, + }, +); + +const Toggle = React.forwardRef< + React.ElementRef, + React.ComponentPropsWithoutRef & + VariantProps +>(({ className, variant, size, ...props }, ref) => ( + +)); + +Toggle.displayName = TogglePrimitive.Root.displayName; + +export { Toggle, toggleVariants }; diff --git a/app/haddock3-restraints-client/schema.d.ts b/app/haddock3-restraints-client/schema.d.ts index 23eab6c9..5891389e 100644 --- a/app/haddock3-restraints-client/schema.d.ts +++ b/app/haddock3-restraints-client/schema.d.ts @@ -31,7 +31,10 @@ export interface paths { }; get?: never; put?: never; - /** Calculate Actpass To Ambig */ + /** + * Calculate Actpass To Ambig + * @description Get the passive residues. + */ post: operations["calculate_actpass_to_ambig_actpass_to_ambig_post"]; delete?: never; options?: never; @@ -48,7 +51,10 @@ export interface paths { }; get?: never; put?: never; - /** Restrain Bodies */ + /** + * Restrain Bodies + * @description Create distance restraints to lock several chains together. + */ post: operations["restrain_bodies_restrain_bodies_post"]; delete?: never; options?: never; @@ -65,7 +71,10 @@ export interface paths { }; get?: never; put?: never; - /** Calculate Accessibility */ + /** + * Calculate Accessibility + * @description Calculate the accessibility of the side chains and apply a cutoff. + */ post: operations["calculate_accessibility_calc_accessibility_post"]; delete?: never; options?: never; @@ -108,6 +117,12 @@ export interface paths { * ```shell * cat pdb | pdb_tidy -strict | pdb_selchain - | pdb_chain - | pdb_fixinsert | pdb_selaltloc | pdb_tidy -strict * ``` + * + * or with `delhetatm` and `keepcoord` set to true: + * + * ```shell + * cat pdb | pdb_tidy -strict | pdb_selchain - | pdb_chain - | pdb_delhetatm | pdb_fixinsert | pdb_keepcoord | pdb_selaltloc | pdb_tidy -strict + * ``` */ post: operations["preprocess_pdb_preprocess_pdb_post"]; delete?: never; @@ -227,6 +242,12 @@ export interface components { * @default [] */ surface: number[]; + /** + * Radius + * @description The radius from active. + * @default 6.5 + */ + radius: number; }; /** RestrainBodiesRequest */ RestrainBodiesRequest: { diff --git a/app/routes/scenarios.antibody-antigen.tsx b/app/routes/scenarios.antibody-antigen.tsx index 04461ff0..51dc42be 100644 --- a/app/routes/scenarios.antibody-antigen.tsx +++ b/app/routes/scenarios.antibody-antigen.tsx @@ -16,7 +16,6 @@ import { ActPassSelection, MoleculeSubForm, } from "~/scenarios/MoleculeSubForm.client"; -import { AntigenSubForm, Flavour } from "~/scenarios/Antigen.client"; import { PDBFileInput } from "~/scenarios/PDBFileInput.client"; import { generateAmbiguousRestraintsFile, @@ -158,43 +157,32 @@ export default function AntibodyAntigenScenario() { const [antibodyActPass, seAntibodyActPass] = useState({ active: [], passive: [], + neighbours: [], chain: "", bodyRestraints: "", }); const [antigenActPass, setAntigen2ActPass] = useState({ active: [], passive: [], + neighbours: [], chain: "", bodyRestraints: "", }); - const [antigenFlavour, setAntigenFlavour] = useState("actpass"); async function onSubmit(event: React.FormEvent) { event.preventDefault(); const form = event.currentTarget; const formData = new FormData(form); - let antigenSelection = antigenActPass; - if (antigenFlavour === "pass") { - // in the ResidueSubForm the user selected residues are stored as active - // and the computed surface neighbouring residues are stored as passive - // here we store all those residues as passive - antigenSelection = { - active: [], - passive: [...antigenActPass.active, ...antigenActPass.passive], - chain: antigenActPass.chain, - bodyRestraints: antigenActPass.bodyRestraints, - }; - } const ambig_fname = await generateAmbiguousRestraintsFile( antibodyActPass, - antigenSelection, + antigenActPass, ); formData.set("ambig_fname", ambig_fname); const unambig_fname = generateUnAmbiguousRestraintsFile( antibodyActPass.bodyRestraints, - antigenSelection.bodyRestraints, + antigenActPass.bodyRestraints, ); if (unambig_fname) { formData.set("unambig_fname", unambig_fname); @@ -237,7 +225,7 @@ export default function AntibodyAntigenScenario() { accessibilityCutoff={0.15} />
-
diff --git a/app/routes/scenarios.protein-protein.tsx b/app/routes/scenarios.protein-protein.tsx index 9877122d..2a68b963 100644 --- a/app/routes/scenarios.protein-protein.tsx +++ b/app/routes/scenarios.protein-protein.tsx @@ -134,12 +134,14 @@ export default function ProteinProteinScenario() { const [protein1ActPass, setProtein1ActPass] = useState({ active: [], passive: [], + neighbours: [], chain: "", bodyRestraints: "", }); const [protein2ActPass, setProtein2ActPass] = useState({ active: [], passive: [], + neighbours: [], chain: "", bodyRestraints: "", }); diff --git a/app/scenarios/Antigen.client.tsx b/app/scenarios/Antigen.client.tsx deleted file mode 100644 index 67f26bd1..00000000 --- a/app/scenarios/Antigen.client.tsx +++ /dev/null @@ -1,237 +0,0 @@ -import { Structure, autoLoad } from "ngl"; -import { useState } from "react"; - -import { chainsFromStructure } from "./molecule.client"; -import { Viewer } from "./Viewer.client"; -import { Label } from "~/components/ui/label"; -import { RadioGroup, RadioGroupItem } from "~/components/ui/radio-group"; -import { - ActPassSelection, - Molecule, - ResiduesSubForm, - MoleculeSubFormWrapper, - HiddenFileInput, - ProcessedStructure, - UserStructure, - RestraintsErrorsReport, -} from "./MoleculeSubForm.client"; -import { PreprocessPipeline, calclulateRestraints } from "./restraints"; - -// TODO give flavour choices for each moleculesubform -export type Flavour = "surf" | "pass" | "actpass"; -function AntigenFlavourPicker({ - value, - onChange, -}: { - value: Flavour; - onChange: (value: Flavour) => void; -}) { - return ( - onChange(value as Flavour)} - className="pt-2" - > -
- - -
-
- - -
-
- {/* This is what ResiduesSubForm currently does */} - - -
-
- ); - // TODO add other combinations like - // - selected residues as active and no surface residues - // - selected residues as passive and no surface residues - // - 2 select residues checkboxes for active passive, residue can not be both passive and active - // or split in multiple steps: - // 1. Select surface, active, passive - // 1. Checkbox Add neighbours as passive -} - -export function AntigenSubForm({ - name, - legend, - description, - actpass, - onActPassChange, - targetChain, - antigenFlavour, - onFlavourChange, - preprocessPipeline = "", - accessibilityCutoff = 0.4, -}: { - name: string; - legend: string; - description: string; - actpass: ActPassSelection; - onActPassChange: (actpass: ActPassSelection) => void; - targetChain: string; - antigenFlavour: Flavour; - onFlavourChange: (flavour: Flavour) => void; - preprocessPipeline?: PreprocessPipeline; - accessibilityCutoff?: number; -}) { - const [molecule, setMolecule] = useState(); - - async function onUserStructureAndChainSelect( - file: File, - chain: string, - chains: string[], - ) { - const restraints = await calclulateRestraints( - file, - chain, - targetChain, - preprocessPipeline, - accessibilityCutoff, - ); - - const structure: Structure = await autoLoad(restraints.file); - const residues = chainsFromStructure(structure)[targetChain]; - const newMolecule: Molecule = { - userFile: file, - userChains: chains, - userSelectedChain: chain, - targetChain, - residues, - file: restraints.file, - surfaceResidues: restraints.surfaceResidues, - }; - if (restraints.errors) { - newMolecule.errors = restraints.errors; - } - setMolecule(newMolecule); - const newSelection = { - active: [], - passive: [], - chain: targetChain, - bodyRestraints: restraints.bodyRestraints, - }; - onActPassChange(newSelection); - } - - async function changeAntigenFlavour(flavour: Flavour) { - if (!molecule) { - return; - } - - onFlavourChange(flavour); - if (flavour === "surf") { - const newSelection = { - active: [], - passive: molecule.surfaceResidues, - chain: targetChain, - bodyRestraints: actpass.bodyRestraints, - }; - onActPassChange(newSelection); - } else { - const newSelection = { - active: [], - passive: [], - chain: targetChain, - bodyRestraints: actpass.bodyRestraints, - }; - onActPassChange(newSelection); - } - } - - const flavourPicker = ( - - ); - let subform = null; - if (molecule) { - if (antigenFlavour === "actpass") { - subform = ( - - {flavourPicker} - - ); - } else if (antigenFlavour === "surf") { - subform = ( -
-
- -
- {flavourPicker} - {/* TODO on hover of a surface residue numbers highlight in ngl and the reverse */} - -
{molecule.surfaceResidues.join(", ")}
-
- ); - } else if (antigenFlavour === "pass") { - subform = ( - - {flavourPicker} - - ); - } - } - return ( - - {molecule ? ( - <> - - - {molecule.errors ? ( - - ) : ( - subform - )} - - ) : ( - <> - - - )} - - ); -} diff --git a/app/scenarios/ChainRadioGroup.tsx b/app/scenarios/ChainRadioGroup.tsx new file mode 100644 index 00000000..f09f7c54 --- /dev/null +++ b/app/scenarios/ChainRadioGroup.tsx @@ -0,0 +1,52 @@ +import { useId } from "react"; +import { Label } from "~/components/ui/label"; +import { RadioGroup, RadioGroupItem } from "~/components/ui/radio-group"; + +export function ChainRadioGroup({ + chains, + onSelect, + selected, +}: { + chains: string[]; + onSelect: (chain: string) => void; + selected: string; +}) { + const id = useId(); + if (chains.length > 5) { + return ( + + ); + } + return ( + + {chains.map((chain) => ( +
+ + +
+ ))} +
+ ); +} diff --git a/app/scenarios/ChainSelect.tsx b/app/scenarios/ChainSelect.tsx index e0377629..91ef44cb 100644 --- a/app/scenarios/ChainSelect.tsx +++ b/app/scenarios/ChainSelect.tsx @@ -1,6 +1,10 @@ -import { useId } from "react"; -import { Label } from "~/components/ui/label"; -import { RadioGroup, RadioGroupItem } from "~/components/ui/radio-group"; +import { + Select, + SelectContent, + SelectItem, + SelectTrigger, + SelectValue, +} from "~/components/ui/select"; export function ChainSelect({ chains, @@ -11,42 +15,21 @@ export function ChainSelect({ onSelect: (chain: string) => void; selected: string; }) { - const id = useId(); - if (chains.length > 5) { - return ( - + + + + {chains.map((chain) => ( - + ))} - - ); - } - return ( - - {chains.map((chain) => ( -
- - -
- ))} -
+
+ ); } diff --git a/app/scenarios/HiddenFileInput.tsx b/app/scenarios/HiddenFileInput.tsx new file mode 100644 index 00000000..1958d665 --- /dev/null +++ b/app/scenarios/HiddenFileInput.tsx @@ -0,0 +1,15 @@ +import { useEffect, useRef } from "react"; + +export function HiddenFileInput({ name, file }: { name: string; file: File }) { + const ref = useRef(null); + + useEffect(() => { + if (ref.current) { + const dataTransfer = new DataTransfer(); + dataTransfer.items.add(file); + ref.current.files = dataTransfer.files; + } + }, [file]); + + return ; +} diff --git a/app/scenarios/LabeledCheckbox.tsx b/app/scenarios/LabeledCheckbox.tsx new file mode 100644 index 00000000..4f2147c5 --- /dev/null +++ b/app/scenarios/LabeledCheckbox.tsx @@ -0,0 +1,20 @@ +import { useId } from "react"; +import { Checkbox } from "~/components/ui/checkbox"; + +export function LabeledCheckbox({ + value, + onChange, + children, +}: { + value: boolean; + onChange: (value: boolean) => void; + children: React.ReactNode; +}) { + const id = useId(); + return ( +
+ + +
+ ); +} diff --git a/app/scenarios/LabeledRadioGroup.tsx b/app/scenarios/LabeledRadioGroup.tsx new file mode 100644 index 00000000..e2946837 --- /dev/null +++ b/app/scenarios/LabeledRadioGroup.tsx @@ -0,0 +1,50 @@ +import { useId } from "react"; +import { Label } from "~/components/ui/label"; +import { RadioGroup, RadioGroupItem } from "~/components/ui/radio-group"; +import { FormItem } from "./FormItem"; + +export function LabeledRadioGroupItem({ + value, + children, + ...props // Forwards props like disabled to RadioGroupItem +}: { + value: string; + children: React.ReactNode; +}) { + const id = useId(); + return ( +
+ + +
+ ); +} + +export function LabeledRadioGroup({ + value, + choices, + onChange, + label, +}: { + value: T; + choices: [T, string][]; + onChange: (value: T) => void; + label: string; +}) { + const name = useId(); + return ( + + onChange(value as T)} + className="pt-2" + > + {choices.map(([value, label]) => ( + + {label} + + ))} + + + ); +} diff --git a/app/scenarios/LinkToFile.tsx b/app/scenarios/LinkToFile.tsx new file mode 100644 index 00000000..5d3fdf10 --- /dev/null +++ b/app/scenarios/LinkToFile.tsx @@ -0,0 +1,23 @@ +import { useState, useEffect, ReactNode } from "react"; + +export function LinkToFile({ + file, + children, +}: { + file: File; + children: ReactNode; +}) { + const [url, setUrl] = useState("#"); + + useEffect(() => { + const url = URL.createObjectURL(file); + setUrl(url); + return () => URL.revokeObjectURL(url); + }, [file]); + + return ( + + {children} + + ); +} diff --git a/app/scenarios/MoleculeSettings.tsx b/app/scenarios/MoleculeSettings.tsx new file mode 100644 index 00000000..1b3a7750 --- /dev/null +++ b/app/scenarios/MoleculeSettings.tsx @@ -0,0 +1,88 @@ +import { StructureRepresentationType } from "ngl"; +import { useState } from "react"; +import { useTheme } from "remix-themes"; +import { SlidersHorizontal } from "lucide-react"; +import { FormItem } from "./FormItem"; +import { Input } from "~/components/ui/input"; +import { + Popover, + PopoverContent, + PopoverTrigger, +} from "~/components/ui/popover"; +import { LabeledRadioGroup } from "./LabeledRadioGroup"; + +export function MoleculeSettings({ + surfaceCutoff, + setSurfaceCutoff, + neighourRadius, + setNeighourRadius, + renderSelectionAs, + onRenderSelectionAsChange, +}: { + surfaceCutoff: number; + setSurfaceCutoff: (cutoff: number) => void; + neighourRadius: number; + setNeighourRadius: (radius: number) => void; + renderSelectionAs: StructureRepresentationType; + onRenderSelectionAsChange: (value: StructureRepresentationType) => void; +}) { + const [cutoff, setcutoff] = useState(surfaceCutoff); + const [radius, setradius] = useState(neighourRadius); + const [theme] = useTheme(); + const style = { colorScheme: theme === "dark" ? "dark" : "light" }; + + function onOpenChange(open: boolean) { + if (!open) { + if (cutoff !== surfaceCutoff) { + setSurfaceCutoff(cutoff); + } + if (radius !== neighourRadius) { + setNeighourRadius(radius); + } + } + } + + return ( + + + + + + + setcutoff(Number(e.target.value))} + /> + + + setradius(Number(e.target.value))} + /> + + + (Close popover to commit changes) + + + ); +} diff --git a/app/scenarios/MoleculeSubForm.client.tsx b/app/scenarios/MoleculeSubForm.client.tsx index f0554fbe..5a740ccd 100644 --- a/app/scenarios/MoleculeSubForm.client.tsx +++ b/app/scenarios/MoleculeSubForm.client.tsx @@ -1,16 +1,20 @@ -import { Structure, autoLoad } from "ngl"; -import { useState, useEffect, ReactNode, useRef } from "react"; - +import { Structure, StructureRepresentationType, autoLoad } from "ngl"; +import { useState, useEffect, ReactNode } from "react"; import { useTheme } from "remix-themes"; import { FormDescription } from "./FormDescription"; import { FormItem } from "./FormItem"; import { ChainSelect } from "./ChainSelect"; -import { ResiduesSelect } from "./ResiduesSelect"; +import { ChainRadioGroup } from "./ChainRadioGroup"; +import { + ResiduesSelect, + ResidueSelection, + ActPass, + PickIn3D, + CopyButton, +} from "./ResiduesSelect"; import { Residue, chainsFromStructure } from "./molecule.client"; -import { Viewer } from "./Viewer.client"; - -import { Checkbox } from "~/components/ui/checkbox"; +import { SimpleViewer, Viewer } from "./Viewer.client"; import { Input } from "~/components/ui/input"; import { Label } from "~/components/ui/label"; import { @@ -19,22 +23,29 @@ import { calclulateRestraints, jsonSafeFile, passiveFromActive, + calculateAccessibility, } from "./restraints"; +import { + RestraintsFlavour, + RestraintsFlavourPicker, +} from "./RestraintsFlavourPicker"; +import { LabeledCheckbox } from "./LabeledCheckbox"; +import { ShowSurfaceBuriedToggles } from "./ShowSurfaceBuriedToggles"; +import { HiddenFileInput } from "./HiddenFileInput"; +import { LinkToFile } from "./LinkToFile"; +import { MoleculeSettings } from "./MoleculeSettings"; +import { Spinner } from "~/components/ui/spinner"; +import { Button } from "~/components/ui/button"; +import { RefreshCw } from "lucide-react"; export type ActPassSelection = { active: number[]; passive: number[]; + neighbours: number[]; chain: string; bodyRestraints: string; }; -function filterOutBuriedResidues( - residues: number[], - surfaceResidues: number[], -) { - return residues.filter((resno) => surfaceResidues.includes(resno)); -} - export function MoleculeSubFormWrapper({ legend, description, @@ -96,7 +107,7 @@ export function UserStructure({ const myname = name + "-user"; return ( <> - +
- {file && ( - - )} + {file && }
{file ? ( - + ) : (

Load a structure first

)} @@ -128,22 +135,6 @@ export function UserStructure({ ); } -function LinkToFile({ file, children }: { file: File; children: ReactNode }) { - const [url, setUrl] = useState("#"); - - useEffect(() => { - const url = URL.createObjectURL(file); - setUrl(url); - return () => URL.revokeObjectURL(url); - }, [file]); - - return ( - - {children} - - ); -} - export interface Molecule { userFile: File; userChains: string[]; @@ -158,24 +149,44 @@ export interface Molecule { export function ProcessedStructure({ molecule, bodyRestraints, + onChainChange, + onRefreshStructure, }: { molecule: Molecule; bodyRestraints: string; + onChainChange: (chain: string) => void; + onRefreshStructure: () => void; }) { const [theme] = useTheme(); const style = { colorScheme: theme === "dark" ? "dark" : "light" }; - // TODO allow another pdb file to be chosen or a different chain to be selected return ( <>
-
+
User uploaded structure:{" "} {molecule.userFile.name} +
- Selected chain {molecule.userSelectedChain} has been filtered{" "} + Selected chain{" "} + {" "} + has been filtered{" "} {molecule.userSelectedChain !== molecule.targetChain && ( and renamed to {molecule.targetChain} @@ -202,35 +213,96 @@ export function ProcessedStructure({ ); } -export function HiddenFileInput({ name, file }: { name: string; file: File }) { - const ref = useRef(null); +async function computeNeighbours({ + structure, + chain, + surface, + active, + passive, + restraintsFlavour, + radius, +}: { + structure: string; + chain: string; + surface: number[]; + active: number[]; + passive: number[]; + restraintsFlavour: RestraintsFlavour; + radius: number; +}): Promise { + if ( + !restraintsFlavour.activeNeighbours && + !restraintsFlavour.passiveNeighbours + ) { + return []; + } + let derivedActive: number[] = []; + if (restraintsFlavour.activeNeighbours) { + derivedActive = active; + } + if (restraintsFlavour.passiveNeighbours) { + derivedActive = derivedActive.concat(passive); + } + return passiveFromActive(structure, chain, derivedActive, surface, radius); +} - useEffect(() => { - if (ref.current) { - const dataTransfer = new DataTransfer(); - dataTransfer.items.add(file); - ref.current.files = dataTransfer.files; +function toggleResidue( + resno: number, + pick: ActPass, + current: ActPassSelection, +) { + const newSelection = { + act: current.active, + pass: current.passive, + }; + if (pick === "act") { + if (newSelection.act.includes(resno)) { + newSelection.act = newSelection.act.filter((r) => r !== resno); + } else { + newSelection.act = [...newSelection.act, resno]; + newSelection.pass = current.passive.filter( + (r) => !newSelection.act.includes(r), + ); } - }, [file]); - - return ; + } else { + if (newSelection.pass.includes(resno)) { + newSelection.pass = newSelection.pass.filter((r) => r !== resno); + } else { + newSelection.pass = [...newSelection.pass, resno]; + newSelection.act = current.active.filter( + (r) => !newSelection.pass.includes(r), + ); + } + } + return newSelection; } export function ResiduesSubForm({ molecule, actpass, + restraintsFlavour, onActPassChange, - label = "Active residues", + disabled, children, + setSurfaceResidues, + label = "Residues", }: { molecule: Molecule; actpass: ActPassSelection; - onActPassChange: (actpass: ActPassSelection) => void; + restraintsFlavour: RestraintsFlavour; + onActPassChange?: (actpass: ActPassSelection) => void; label?: string; + disabled: boolean; + setSurfaceResidues: (surfaceResidues: number[]) => void; children?: ReactNode; }) { - const [showPassive, setShowPassive] = useState(false); + const [showNeighbours, setShowNeigbours] = useState(false); + const [surfaceCutoff, setSurfaceCutoff] = useState(0.15); + const [neighourRadius, setNeighourRadius] = useState(6.5); const [showSurface, setShowSurface] = useState(false); + const [showBuried, setShowBuried] = useState(false); + const [renderSelectionAs, setRenderSelectionAs] = + useState("surface"); // gzipping and base64 encoding file can be slow, so we cache it // for example 8qg1 of 1.7Mb took 208ms const [safeFile, setSafeFile] = useState(undefined); @@ -240,6 +312,8 @@ export function ResiduesSubForm({ const [hoveredFrom3DResidue, setHoveredFrom3DResidue] = useState< number | undefined >(); + const [picker3D, setPicker3D] = useState("act"); + const [busy, setBusy] = useState(false); useEffect(() => { const fetchSafeFile = async () => { @@ -249,60 +323,113 @@ export function ResiduesSubForm({ fetchSafeFile(); }, [molecule.file]); - async function handleActiveResiduesChange(activeResidues: number[]) { - if (!molecule) { + useEffect(() => { + setShowNeigbours(false); + if (restraintsFlavour.kind === "pass") { + setPicker3D("pass"); + } + if (["act", "actpass"].includes(restraintsFlavour.kind)) { + setPicker3D("act"); + } + }, [restraintsFlavour, setPicker3D, setShowNeigbours]); + + async function handle2DResidueChange(newSelection: ResidueSelection) { + if (!onActPassChange || !safeFile) { return; } - const activeSelection = filterOutBuriedResidues( - activeResidues, - molecule.surfaceResidues, - ); + setBusy(true); try { - const structure = - safeFile === undefined ? await jsonSafeFile(molecule.file) : safeFile; - const passiveResidues = await passiveFromActive( - structure, - molecule.targetChain, - activeSelection, - molecule.surfaceResidues, - ); - onActPassChange({ - active: activeResidues, - passive: passiveResidues, + const neighbours = await computeNeighbours({ + structure: safeFile, chain: molecule.targetChain, - bodyRestraints: actpass.bodyRestraints, + surface: molecule.surfaceResidues, + active: newSelection.act, + passive: newSelection.pass, + restraintsFlavour, + radius: neighourRadius, }); - } catch (error) { onActPassChange({ - active: activeResidues, - passive: [], + active: newSelection.act, + passive: newSelection.pass, + neighbours, chain: molecule.targetChain, bodyRestraints: actpass.bodyRestraints, }); - console.log(error); - // TODO show error to user + } finally { + setBusy(false); } } - function onActiveResiduePick(chain: string, resno: number) { + function handle3DResiduePick(chain: string, resno: number) { if ( molecule.targetChain !== chain || !molecule.surfaceResidues.includes(resno) ) { return; } - const activeResidues = actpass.active; - const index = activeResidues.indexOf(resno); - if (index === -1) { - handleActiveResiduesChange([...activeResidues, resno]); + const newSelection = toggleResidue(resno, picker3D, actpass); + handle2DResidueChange(newSelection); + } + + async function onNeighourRadiusChange(radius: number) { + if (!onActPassChange || !safeFile) { + return; + } + setBusy(true); + try { + const neighbours = await computeNeighbours({ + structure: safeFile, + chain: molecule.targetChain, + surface: molecule.surfaceResidues, + active: actpass.active, + passive: actpass.passive, + restraintsFlavour, + radius: neighourRadius, + }); + onActPassChange({ + ...actpass, + neighbours, + }); + setNeighourRadius(radius); + } finally { + setBusy(false); + } + } + + async function onSurfaceCutoffChange(cutoff: number) { + if (!safeFile) { + return; + } + setBusy(true); + try { + const surfaceResidues = await calculateAccessibility(safeFile, cutoff); + setSurfaceResidues(surfaceResidues[0][molecule.targetChain] || []); + } finally { + setBusy(false); + } + setSurfaceCutoff(cutoff); + } + + function onRenderSelectionAsChange(value: StructureRepresentationType) { + setRenderSelectionAs(value); + if (value === "surface") { + setShowBuried(false); + setShowSurface(true); } else { - handleActiveResiduesChange([ - ...activeResidues.slice(0, index), - ...activeResidues.slice(index + 1), - ]); + setShowSurface(false); + setShowBuried(false); } } + let surfaceOrBuriedResidues: number[] = []; + if (showSurface) { + surfaceOrBuriedResidues = molecule.surfaceResidues; + } else if (showBuried) { + surfaceOrBuriedResidues = molecule.residues + .filter((residue) => !molecule.surfaceResidues.includes(residue.resno)) + .map((residue) => residue.resno); + } + return ( <>
@@ -310,38 +437,81 @@ export function ResiduesSubForm({ structure={molecule.file} chain={molecule.targetChain} active={actpass.active} - passive={showPassive ? actpass.passive : []} - surface={showSurface ? molecule.surfaceResidues : []} - activePickable - onActivePick={onActiveResiduePick} + passive={actpass.passive} + renderSelectionAs={renderSelectionAs} + surface={surfaceOrBuriedResidues} + neighbours={showNeighbours ? actpass.neighbours : []} + onPick={ + restraintsFlavour.kind === "surf" ? undefined : handle3DResiduePick + } higlightResidue={hoveredFrom2DResidue} onHover={(_, residue) => setHoveredFrom3DResidue(residue)} + onMouseLeave={() => setHoveredFrom3DResidue(undefined)} />
{children} -
- setShowPassive(!showPassive)} - /> - - setShowSurface(!showSurface)} - /> - - {/* TODO show none/surface/buried radio group */} +
+ {(restraintsFlavour.activeNeighbours || + restraintsFlavour.passiveNeighbours) && + restraintsFlavour.kind !== "surf" && ( + + Show computed passive neighbours + + )} + {showNeighbours && ( +
+ + +
+ )} + {restraintsFlavour.kind === "actpass" && ( + + )} +
+ {restraintsFlavour.kind !== "surf" && + renderSelectionAs !== "surface" && ( + + )} +
+
+ + +
); @@ -368,6 +538,68 @@ export function RestraintsErrorsReport({ ); } +function ResiduesSubFormWrapper({ + molecule, + actpass, + onActPassChange, + targetChain, + setSurfaceResidues, +}: { + molecule: Molecule; + actpass: ActPassSelection; + onActPassChange: (actpass: ActPassSelection) => void; + targetChain: string; + setSurfaceResidues: (surfaceResidues: number[]) => void; +}) { + const [restraintsFlavour, setrestraintsFlavour] = useState( + { + kind: "act", + activeNeighbours: true, + passiveNeighbours: false, + }, + ); + + function onRestraintsFlavourChange(restraintsFlavour: RestraintsFlavour) { + setrestraintsFlavour(restraintsFlavour); + if (restraintsFlavour.kind === "surf") { + onActPassChange({ + active: [], + passive: molecule.surfaceResidues, + neighbours: [], + chain: targetChain, + bodyRestraints: actpass.bodyRestraints, + }); + } else { + onActPassChange({ + active: [], + passive: [], + neighbours: [], + chain: targetChain, + bodyRestraints: actpass.bodyRestraints, + }); + } + } + + const disabled = restraintsFlavour.kind === "surf"; + + return ( + <> + + + + ); +} + export function MoleculeSubForm({ name, legend, @@ -401,9 +633,11 @@ export function MoleculeSubForm({ preprocessPipeline, accessibilityCutoff, ); - const structure: Structure = await autoLoad(restraints.file); const residues = chainsFromStructure(structure)[targetChain]; + residues.forEach((residue) => { + residue.surface = restraints.surfaceResidues.includes(residue.resno); + }); const newMolecule: Molecule = { userFile: file, userChains: chains, @@ -420,12 +654,23 @@ export function MoleculeSubForm({ const newSelection = { active: [], passive: [], + neighbours: [], chain: targetChain, bodyRestraints: restraints.bodyRestraints, }; onActPassChange(newSelection); } + function setMoleculeSurfaceResidues(surfaceResidues: number[]) { + if (molecule) { + const residues = molecule.residues.map((residue) => { + residue.surface = surfaceResidues.includes(residue.resno); + return residue; + }); + setMolecule({ ...molecule, residues, surfaceResidues }); + } + } + return ( {molecule ? ( @@ -434,14 +679,24 @@ export function MoleculeSubForm({ + onUserStructureAndChainSelect( + molecule.userFile, + chain, + molecule.userChains, + ) + } + onRefreshStructure={() => setMolecule(undefined)} /> {molecule.errors ? ( ) : ( - )} diff --git a/app/scenarios/ResiduesSelect.tsx b/app/scenarios/ResiduesSelect.tsx index 191359f9..b4c8e878 100644 --- a/app/scenarios/ResiduesSelect.tsx +++ b/app/scenarios/ResiduesSelect.tsx @@ -1,25 +1,48 @@ -import { ChangeEvent, useId, useState } from "react"; +import { ChangeEvent, useId, useMemo, useState } from "react"; import { FormDescription } from "./FormDescription"; -import { Residue, SecondaryStructure } from "./molecule.client"; -import clsx from "clsx"; +import { Residue } from "./molecule.client"; import { Button } from "~/components/ui/button"; import { Input } from "~/components/ui/input"; import { useTheme } from "remix-themes"; import { cn } from "~/lib/utils"; +import { ToggleGroup, ToggleGroupItem } from "~/components/ui/toggle-group"; -const residueVariants: Record = { - sheet: "bg-amber-200 dark:bg-amber-700", - helix: "bg-red-200 dark:bg-red-900", - turn: "", - "": "", +type Variant = "act" | "pass" | "highlight" | ""; + +const residueVariants: Record = { + act: "bg-green-100 dark:bg-green-700", + pass: "bg-yellow-100 dark:bg-yellow-700", + highlight: "bg-secondary dark:bg-secondary-foreground", + "": "bg-inherit dark:bg-inherit", }; +function CopyToClipBoardIcon() { + return ( + + + + ); +} + function ImportResidues({ selected, onChange, + disabled = false, }: { selected: number[]; onChange: (selected: number[]) => void; + disabled?: boolean; }) { const sortedResidues = [...selected].sort((a, b) => a - b).join(","); @@ -35,112 +58,214 @@ function ImportResidues({ } } return ( -
- - +
+ + + {!disabled && ( + + )}
); } +export function CopyButton({ content }: { content: string }) { + return ( + + ); +} + function ResidueCheckbox({ resno, - sec, seq, + showActive, + showPassive, highlight, - checked, - disabled, + activeChecked, + passiveChecked, + neighbourChecked, + activeDisabled, + passiveDisabled, onHover, - onChange, + onActiveChange, + onPassiveChange, }: { resno: number; - sec: SecondaryStructure; seq: string; - highlight: boolean; - checked: boolean; - disabled: boolean; - onHover: () => void; - onChange: (event: ChangeEvent) => void; + showActive: boolean; + showPassive: boolean; + highlight: boolean; // External component wants us to highlight this residue + activeChecked: boolean; + passiveChecked: boolean; + neighbourChecked: boolean; + activeDisabled: boolean; + passiveDisabled: boolean; + onHover: () => void; // We want external component to know we are hovering + onActiveChange: (event: ChangeEvent) => void; + onPassiveChange: (event: ChangeEvent) => void; }) { const id = useId(); const [theme] = useTheme(); const style = { colorScheme: theme === "dark" ? "dark" : "light" }; + let htmlFor = id + "act"; + if (showPassive && !showActive) { + htmlFor = id + "pass"; + } + + let variant: Variant = ""; + if (passiveChecked || neighbourChecked) { + variant = "pass"; + } + if (activeChecked) { + variant = "act"; + } + if (highlight) { + variant = "highlight"; + } return (
- - + + {showActive && ( + + )} + {showPassive && ( + + )}
); } +export interface ResidueSelection { + act: number[]; + pass: number[]; +} + +export interface ResidueNeighbourSelection extends ResidueSelection { + neighbours: number[]; +} + export function ResiduesSelect({ options, selected, onChange, - surface, + disabledPassive = false, + disabledActive = false, + showPassive = false, + showActive = false, + showNeighbours = false, onHover, highlight, }: { options: Residue[]; - selected: number[]; - onChange: (selected: number[]) => void; - surface: number[]; + selected: ResidueNeighbourSelection; + onChange: (selected: ResidueSelection) => void; + disabledPassive?: boolean; + disabledActive?: boolean; + showPassive?: boolean; + showActive?: boolean; + showNeighbours?: boolean; onHover: (resno: number | undefined) => void; highlight: number | undefined; }) { + const surface = useMemo( + () => options.filter((r) => r.surface).map((r) => r.resno), + [options], + ); const [lastChecked, setLastChecked] = useState(null); - function handleChange(e: ChangeEvent, index: number) { + function handleChange( + e: ChangeEvent, + index: number, + actpass: ActPass, + ) { const residue = parseInt(e.target.value); const ne = e.nativeEvent as KeyboardEvent; + let newSelected: number[] = []; if (ne.shiftKey && lastChecked !== null) { const start = Math.min(lastChecked, index); const end = Math.max(lastChecked, index); - const newSelected = [...selected]; + newSelected = [...selected[actpass]]; for (let i = start; i <= end; i++) { const resno = options[i].resno; if (!newSelected.includes(resno) && surface.includes(resno)) { newSelected.push(resno); } } - onChange(newSelected); } else { if (e.target.checked) { - onChange([...selected, residue]); + newSelected = [...selected[actpass], residue]; } else { - onChange(selected.filter((r) => r !== residue)); + newSelected = selected[actpass].filter((r) => r !== residue); } } + if (actpass === "act") { + // Active should take precedence over passive. + // For example given passive is selected, + // then selecting same residue as active should remove it from passive. + const passiveWithoutAlsoActive = selected.pass.filter( + (r) => !newSelected.includes(r), + ); + onChange({ + act: newSelected, + pass: passiveWithoutAlsoActive, + }); + } else { + onChange({ + pass: newSelected, + act: selected.act, + }); + } + if (e.target.checked) { setLastChecked(index); } } - function onImport(selected: number[]) { - const filtered = selected.filter((r) => surface.includes(r)); - onChange(filtered); + function onActiveImport(imported: number[]) { + const filtered = imported.filter((r) => surface.includes(r)); + onChange({ + act: filtered, + pass: selected.pass, + }); + } + function onPassiveImport(imported: number[]) { + const filtered = imported.filter((r) => surface.includes(r)); + onChange({ + pass: filtered, + act: selected.act, + }); } const chunkSize = 10; @@ -156,9 +281,14 @@ export function ResiduesSelect({ return resultArray; }, initialArray); + return ( <>
+ {chunks.map((chunk, cindex) => (

onHover(r.resno)} - onChange={(e) => handleChange(e, cindex * chunkSize + index)} + onActiveChange={(e) => + handleChange(e, cindex * chunkSize + index, "act") + } + onPassiveChange={(e) => + handleChange(e, cindex * chunkSize + index, "pass") + } + showActive={showActive} + showPassive={showPassive || showNeighbours} + neighbourChecked={selected.neighbours.includes(r.resno)} /> ))}

@@ -186,17 +329,97 @@ export function ResiduesSelect({ ))}
- - Helix - {" "} - - Sheet - {" "} (Hold Shift to select a range of residues. Click residue in 3D viewer to select.) - {/* TODO add buttons to select all, none, invert */} - +
+ {showActive && ( +
+ Active + +
+ )} + {showPassive && ( +
+ Passive + +
+ )} +
); } + +export type ActPass = "act" | "pass"; + +export function PickIn3D({ + value, + onChange, +}: { + value: ActPass; + onChange: (value: ActPass) => void; +}) { + return ( +
+
3D viewer picks
+ + + A + + + P + + +
+ ); +} + +function ResiduesHeader({ + showActive, + showPassive, +}: { + showActive: boolean; + showPassive: boolean; +}) { + return ( +
+

 

+
+
+ {/* use non breaking whitespace to prevent layout shifts */} +         +
+ {showActive && } + {showPassive && } +
+
+ ); +} + +function ResidueHeaderItem({ + variant, + label, +}: { + variant: Variant; + label: string; +}) { + return
{label}
; +} diff --git a/app/scenarios/RestraintsFlavourPicker.tsx b/app/scenarios/RestraintsFlavourPicker.tsx new file mode 100644 index 00000000..66c07f98 --- /dev/null +++ b/app/scenarios/RestraintsFlavourPicker.tsx @@ -0,0 +1,106 @@ +/* +Kinds: + +1. Surface residues as passive +2. Selected residues as passive +3. Selected residues as active (default) +4. Select active and passive set of residues + +For kind 2, 3 add checkbox add surface neighbours of selected residues as passive. +For kind 4 would need 2 checkboxes to add neighbours of active selected residues and one for neigbours of passive. +*/ + +import { LabeledCheckbox } from "./LabeledCheckbox"; +import { LabeledRadioGroup } from "./LabeledRadioGroup"; + +export type Kind = "surf" | "act" | "pass" | "actpass"; + +export interface RestraintsFlavour { + kind: Kind; + activeNeighbours: boolean; + passiveNeighbours: boolean; +} + +function KindRadioGroup({ + value, + onChange, +}: { + value: Kind; + onChange: (value: Kind) => void; +}) { + return ( + + ); +} + +export function RestraintsFlavourPicker({ + value = { kind: "act", activeNeighbours: true, passiveNeighbours: false }, + onChange, +}: { + value: RestraintsFlavour; + onChange: (value: RestraintsFlavour) => void; +}) { + function onKindChange(kind: Kind) { + if (kind === "act") { + onChange({ kind, activeNeighbours: true, passiveNeighbours: false }); + return; + } + onChange({ kind, activeNeighbours: false, passiveNeighbours: false }); + } + + return ( + <> + + {value.kind === "act" && ( + + onChange({ ...value, activeNeighbours }) + } + > + Add surface neighbours of selected residues as passive + + )} + {value.kind === "pass" && ( + + onChange({ ...value, passiveNeighbours }) + } + > + Add surface neighbours of selected residues as passive + + )} + {value.kind === "actpass" && ( + <> + + onChange({ ...value, activeNeighbours }) + } + > + Add surface neighbours of active selected residues + + + onChange({ ...value, passiveNeighbours }) + } + > + Add surface neighbours of passive selected residues + + + )} + + ); +} diff --git a/app/scenarios/ShowSurfaceBuriedToggles.tsx b/app/scenarios/ShowSurfaceBuriedToggles.tsx new file mode 100644 index 00000000..bfb9a49c --- /dev/null +++ b/app/scenarios/ShowSurfaceBuriedToggles.tsx @@ -0,0 +1,44 @@ +import { useId } from "react"; +import { Label } from "~/components/ui/label"; +import { ToggleGroup, ToggleGroupItem } from "~/components/ui/toggle-group"; + +export function ShowSurfaceBuriedToggles({ + surface, + setSurface, + buried, + setBuried, +}: { + surface: boolean; + setSurface: (show: boolean) => void; + buried: boolean; + setBuried: (show: boolean) => void; +}) { + const id = useId(); + let value: "" | "surface" | "buried" = ""; + if (surface) { + value = "surface"; + } else if (buried) { + value = "buried"; + } + + function onValueChange(value: string) { + setSurface(value === "surface"); + setBuried(value === "buried"); + } + + return ( +
+ + + Surface + Buried + +
+ ); +} diff --git a/app/scenarios/Viewer.client.tsx b/app/scenarios/Viewer.client.tsx index e4d9028c..f03d482a 100644 --- a/app/scenarios/Viewer.client.tsx +++ b/app/scenarios/Viewer.client.tsx @@ -9,8 +9,10 @@ import { useState, Component as ReactComponent, ErrorInfo, + useMemo, } from "react"; import { + ColormakerRegistry, Component, PickingProxy, Stage, @@ -46,33 +48,27 @@ function useStage() { export function NGLResidues({ residues, color, - opacity, + opacity = 1.0, representation, - pickable = false, - onPick, - onHover, }: { residues: number[]; color: string; - opacity: number; + opacity?: number; representation: StructureRepresentationType; - hovered?: number[]; - pickable?: boolean; - onPick?: (chain: string, residue: number) => void; - onHover?: (chain: string, residue: number) => void; }) { const name = useId(); const stage = useStage(); const component = useComponent(); + const selection = useMemo(() => { + const sortedResidues = [...residues].sort((a, b) => a - b); + return sortedResidues.length ? sortedResidues.join(", ") : "not all"; + }, [residues]); + useEffect(() => { - const repr = stage.getRepresentationsByName(name).first; - if (repr) { - repr.dispose(); - } component.addRepresentation(representation, { name, - sele: "not all", + sele: selection, color, opacity, }); @@ -82,66 +78,16 @@ export function NGLResidues({ repr.dispose(); } }; + // to not (re)create new representation when selection changes, keep it out of dep list + // eslint-disable-next-line react-hooks/exhaustive-deps }, [stage, component, color, opacity, name, representation]); useEffect(() => { const repr = stage.getRepresentationsByName(name).first; if (repr) { - const sortedResidues = [...residues].sort((a, b) => a - b); - const sel = sortedResidues.length ? sortedResidues.join(", ") : "not all"; - repr.setSelection(sel); + repr.setSelection(selection); } - }, [residues, name, stage]); - - const onClick = useCallback( - (pickinProxy: PickingProxy) => { - if (onPick && pickinProxy?.atom?.resno && pickinProxy?.atom?.chainname) { - onPick(pickinProxy.atom.chainname, pickinProxy.atom.resno); - } - }, - [onPick], - ); - - useEffect(() => { - if (!onClick) { - return; - } - if (pickable) { - stage.signals.clicked.add(onClick); - } else { - stage.signals.clicked.remove(onClick); - } - return () => { - if (onClick) { - stage.signals.clicked.remove(onClick); - } - }; - }, [stage, pickable, onClick]); - - const onHoverCallback = useCallback( - (pickinProxy: PickingProxy) => { - if (onHover && pickinProxy?.atom?.resno && pickinProxy?.atom?.chainname) { - onHover(pickinProxy.atom.chainname, pickinProxy.atom.resno); - } - }, - [onHover], - ); - - useEffect(() => { - if (!onHoverCallback) { - return; - } - if (pickable) { - stage.signals.hovered.add(onHoverCallback); - } else { - stage.signals.hovered.remove(onHoverCallback); - } - return () => { - if (onHoverCallback) { - stage.signals.hovered.remove(onHoverCallback); - } - }; - }, [stage, pickable, onHoverCallback]); + }, [selection, name, stage]); return null; } @@ -253,7 +199,17 @@ export function NGLComponent({ ); } -export function NGLStage({ children }: { children: ReactNode }) { +export function NGLStage({ + onMouseLeave = () => {}, + onPick, + onHover, + children, +}: { + children: ReactNode; + onPick?: (chain: string, residue: number, componentName: string) => void; + onHover?: (chain: string, residue: number, componentName: string) => void; + onMouseLeave?: () => void; +}) { const [stage, setStage] = useState(); const stageElementRef: RefCallback = useCallback((element) => { @@ -272,9 +228,61 @@ export function NGLStage({ children }: { children: ReactNode }) { }; }, [stage]); - // TODO make height and width configurable + const onClick = useCallback( + (pickinProxy: PickingProxy) => { + if (onPick && pickinProxy?.atom?.resno && pickinProxy?.atom?.chainname) { + onPick( + pickinProxy.atom.chainname, + pickinProxy.atom.resno, + pickinProxy.component.name, + ); + } + }, + [onPick], + ); + + useEffect(() => { + if (!onClick || !stage) { + return; + } + stage.signals.clicked.add(onClick); + return () => { + if (onClick) { + stage.signals.clicked.remove(onClick); + } + }; + }, [stage, onClick]); + + const onHoverCallback = useCallback( + (pickinProxy: PickingProxy) => { + if (onHover && pickinProxy?.atom?.resno && pickinProxy?.atom?.chainname) { + onHover( + pickinProxy.atom.chainname, + pickinProxy.atom.resno, + pickinProxy.component.name, + ); + } + }, + [onHover], + ); + + useEffect(() => { + if (!onHoverCallback || !stage) { + return; + } + stage.signals.hovered.add(onHoverCallback); + return () => { + if (onHoverCallback) { + stage.signals.hovered.remove(onHoverCallback); + } + }; + }, [stage, onHoverCallback]); + return ( -
+
{stage && ( <> @@ -329,71 +337,187 @@ class ErrorBoundary extends ReactComponent< } } +/** + * Use single surface to display multiple colors of residue sets + */ +export function NGLSurface({ + active = [], + passive = [], + neighbours = [], + highlight, + activeColor = "green", + passiveColor = "yellow", + neighboursColor = "orange", + highlightColor = "red", + defaultColor = "white", +}: { + active: number[]; + passive: number[]; + neighbours: number[]; + highlight?: number; + activeColor?: string; + passiveColor?: string; + defaultColor?: string; + highlightColor?: string; + neighboursColor?: string; +}) { + const name = useId(); + + const schemeId = useMemo(() => { + const oldSchemeId = Object.keys(ColormakerRegistry.userSchemes).find( + (key) => key.endsWith(`|${name}`), + ); + if (oldSchemeId) { + ColormakerRegistry.removeScheme(oldSchemeId); + } + return ColormakerRegistry.addSelectionScheme( + [ + [highlightColor, `${highlight}` ?? "not all", undefined], + [activeColor, active.join(", "), undefined], + [passiveColor, passive.join(", "), undefined], + [neighboursColor, neighbours.join(", "), undefined], + [defaultColor, "*", undefined], + ], + name, + ); + }, [ + active, + activeColor, + defaultColor, + highlight, + highlightColor, + name, + neighbours, + neighboursColor, + passive, + passiveColor, + ]); + + const stage = useStage(); + const component = useComponent(); + + useEffect(() => { + component.addRepresentation("surface", { + name, + color: defaultColor, + }); + return () => { + const repr = stage.getRepresentationsByName(name).first; + if (repr) { + repr.dispose(); + } + }; + }, [name, defaultColor, stage, component]); + + useEffect(() => { + const repr = stage.getRepresentationsByName(name).first; + if (repr) { + repr.setColor(schemeId); + } + }, [schemeId, name, stage]); + + return null; +} + +export function SimpleViewer({ structure }: { structure: File }) { + return ( + + + + + + ); +} + export function Viewer({ structure, chain, active, passive, + renderSelectionAs = "surface", surface, - activePickable, - onActivePick, + neighbours = [], higlightResidue, + onPick, onHover, + onMouseLeave = () => {}, }: { structure: File; chain: string; active: number[]; passive: number[]; surface: number[]; - activePickable?: boolean; - onActivePick?: (chain: string, residue: number) => void; + renderSelectionAs?: StructureRepresentationType; + neighbours?: number[]; higlightResidue?: number | undefined; + onPick?: (chain: string, residue: number) => void; onHover?: (chain: string, residue: number) => void; + onMouseLeave?: () => void; }) { const [theme] = useTheme(); const isDark = theme === "dark"; - const activeColor = isDark ? "yellow" : "green"; - const passiveColor = isDark ? "green" : "yellow"; - const opacity = isDark ? 0.7 : 0.3; - return ( - - - - {higlightResidue && ( - - )} + const activeColor = isDark ? "green" : "lime"; + const passiveColor = isDark ? "orange" : "yellow"; + const opacity = 0.5; + + let representations = <>; + if (renderSelectionAs === "surface") { + representations = ( + + ); + } else { + representations = ( + <> + {higlightResidue && ( - - - + )} + + + + + + ); + } + + return ( + + + + {representations} diff --git a/app/scenarios/molecule.client.ts b/app/scenarios/molecule.client.ts index 0a9daa49..5a30742a 100644 --- a/app/scenarios/molecule.client.ts +++ b/app/scenarios/molecule.client.ts @@ -1,10 +1,10 @@ import { Structure, autoLoad } from "ngl"; -import ResidueProxy from "ngl/dist/declarations/proxy/residue-proxy"; export interface Residue { resno: number; seq: string; - sec: SecondaryStructure; + // residues which are not a amino acids, rna or dna do not have a single letter code representation + // TODO handle non amino acids mrna or dna surface?: boolean; } export type Chains = Record; @@ -15,23 +15,6 @@ export interface Molecule { originalFile: File; // File not passed through the pdbtools preprocess pipeline } -export type SecondaryStructure = "sheet" | "helix" | "turn" | ""; - -function secondaryStructureOfResidue( - residue: ResidueProxy, -): SecondaryStructure { - if (residue.isSheet()) { - return "sheet"; - } - if (residue.isHelix()) { - return "helix"; - } - if (residue.isTurn()) { - return "turn"; - } - return ""; -} - export function chainsFromStructure(structure: Structure) { const chains: Chains = {}; structure.eachChain((c) => { @@ -41,7 +24,6 @@ export function chainsFromStructure(structure: Structure) { residues.push({ resno: r.resno, seq: r.getResname1(), - sec: secondaryStructureOfResidue(r), }); }); // Same chain can be before+after TER line diff --git a/app/scenarios/restraints.ts b/app/scenarios/restraints.ts index 726b209f..a43caa3e 100644 --- a/app/scenarios/restraints.ts +++ b/app/scenarios/restraints.ts @@ -20,8 +20,8 @@ export async function generateAmbiguousRestraintsFile( body: { active1: selection1.active, active2: selection2.active, - passive1: selection1.passive, - passive2: selection2.passive, + passive1: [...selection1.passive, ...selection1.neighbours], + passive2: [...selection2.passive, ...selection2.neighbours], segid1: selection1.chain, segid2: selection2.chain, }, @@ -59,7 +59,7 @@ export async function passiveFromActive( chain: string, activeResidues: number[], surface: number[], - // TODO make cutoff configurable by user + radius: number, ) { /* On CLI @@ -70,6 +70,7 @@ export async function passiveFromActive( chain, active: activeResidues, surface, + radius, }; const { data, error } = await client.POST("/passive_from_active", { body, @@ -96,9 +97,9 @@ function flattenErrorResponses(response: HTTPValidationError): string { throw new Error("Could not flatten error response"); } -async function calculateAccessibility( +export async function calculateAccessibility( structure: string, - cutoff = 0.15, // TODO make configurable by user + cutoff = 0.15, ): Promise<[Record, undefined | string]> { const body = { structure, diff --git a/deploy/Dockerfile.bartenderhaddock3 b/deploy/Dockerfile.bartenderhaddock3 index ad468f34..cea56d41 100644 --- a/deploy/Dockerfile.bartenderhaddock3 +++ b/deploy/Dockerfile.bartenderhaddock3 @@ -26,7 +26,7 @@ RUN apt-get update && \ # haddock3 ============================================================================================================ WORKDIR /opt/haddock3 -RUN git clone --recursive https://github.com/${HADDOCK3_GHORG}/haddock3.git . && git checkout ${HADDOCK3_VERSION} +RUN echo cachebust=1 && git clone --recursive https://github.com/${HADDOCK3_GHORG}/haddock3.git . && git checkout ${HADDOCK3_VERSION} WORKDIR /opt/haddock3/src/fcc/src RUN make WORKDIR /opt/haddock3/src/fast-rmsdmatrix/src diff --git a/docs/scenarios.md b/docs/scenarios.md index 7c18fe42..a477cf74 100644 --- a/docs/scenarios.md +++ b/docs/scenarios.md @@ -10,11 +10,11 @@ 6. Compute bodies contraints of chain 7. Parse chains/residues from preprocessed file 8. Uses restraints calculate_accessibility endpoint to get surface residues -9. Show processed pdb file in ngl -10. Select an active redidue -11. Uses restraints passive_from_active endpoint to get passive residues -12. Repeat steps 7-8 until satisfied -13. Steps 1-9 for second pdb file +9. Pick flavour of residue selection for restraints. +10. Show processed pdb file in ngl or sequence and comma separated list. +11. Select an active and/or passive redidues +12. Uses restraints passive_from_active endpoint to get passive residues when requested +13. Steps 1-12 for second pdb file 14. Uses actpass_to_ambig endpoint to generate ambig tbl file 15. Concatenate body contraints of both chains and if not empty use as unambig tbl file 16. Create archive with workflow, processed pdb files and tbl files diff --git a/docs/testing.md b/docs/testing.md index 63d2b23a..355e4356 100644 --- a/docs/testing.md +++ b/docs/testing.md @@ -31,3 +31,11 @@ npx playwright test --project webkit ``` Playwright can not be run when you are inside a devcontainer. You need to run it on your host machine. + +## Component testing and development + +Use [Storybook](https://storybook.js.org) to develop and test components in isolation. + +```sh +npm run storybook +``` diff --git a/package-lock.json b/package-lock.json index 5637e3d0..ccabb224 100644 --- a/package-lock.json +++ b/package-lock.json @@ -16,9 +16,12 @@ "@radix-ui/react-dropdown-menu": "^2.0.6", "@radix-ui/react-label": "^2.0.2", "@radix-ui/react-navigation-menu": "^1.1.4", + "@radix-ui/react-popover": "^1.0.7", "@radix-ui/react-radio-group": "^1.1.3", "@radix-ui/react-select": "^2.0.0", "@radix-ui/react-slot": "^1.0.2", + "@radix-ui/react-toggle": "^1.0.3", + "@radix-ui/react-toggle-group": "^1.0.4", "@radix-ui/react-tooltip": "^1.0.7", "@remix-run/css-bundle": "^2.5.1", "@remix-run/node": "^2.5.1", @@ -57,9 +60,19 @@ "valibot": "^0.20.1" }, "devDependencies": { + "@chromatic-com/storybook": "^1.3.3", "@ltd/j-toml": "^1.38.0", "@playwright/test": "^1.43.0", "@remix-run/dev": "^2.5.1", + 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-16723,6 +22921,12 @@ "node": ">=8.0" } }, + "node_modules/tocbot": { + "version": "4.27.0", + "resolved": "https://registry.npmjs.org/tocbot/-/tocbot-4.27.0.tgz", + "integrity": "sha512-x3ZPNFPVOYCAyW4CEW8KszGfqB3/fnY1QX1tfUHH1fj1r6I8v0g5w0flNsWf7htZKtzqtdiPqu//II3ngL/WwA==", + "dev": true + }, "node_modules/toidentifier": { "version": "1.0.1", "resolved": "https://registry.npmjs.org/toidentifier/-/toidentifier-1.0.1.tgz", @@ -16793,6 +22997,15 @@ "typescript": ">=4.2.0" } }, + "node_modules/ts-dedent": { + "version": "2.2.0", + "resolved": "https://registry.npmjs.org/ts-dedent/-/ts-dedent-2.2.0.tgz", + "integrity": "sha512-q5W7tVM71e2xjHZTlgfTDoPF/SmqKG5hddq9SzR49CH2hayqRKJtQ4mtRlSxKaJlR/+9rEM+mnBHf7I2/BQcpQ==", + "dev": true, + "engines": { + "node": ">=6.10" + } + }, "node_modules/ts-interface-checker": { "version": "0.1.13", "resolved": "https://registry.npmjs.org/ts-interface-checker/-/ts-interface-checker-0.1.13.tgz", @@ -16887,6 +23100,27 @@ "resolved": 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"4.7.1", "resolved": "https://registry.npmjs.org/tsx/-/tsx-4.7.1.tgz", @@ -17287,6 +23521,12 @@ "@esbuild/win32-x64": "0.19.12" } }, + "node_modules/tween-functions": { + "version": "1.2.0", + "resolved": "https://registry.npmjs.org/tween-functions/-/tween-functions-1.2.0.tgz", + "integrity": "sha512-PZBtLYcCLtEcjL14Fzb1gSxPBeL7nWvGhO5ZFPGqziCcr8uvHp0NDmdjBchp6KHL+tExcg0m3NISmKxhU394dA==", + "dev": true + }, "node_modules/type": { "version": "1.2.0", "resolved": "https://registry.npmjs.org/type/-/type-1.2.0.tgz", @@ -17430,11 +23670,24 @@ } }, "node_modules/ufo": { - "version": "1.3.2", - "resolved": "https://registry.npmjs.org/ufo/-/ufo-1.3.2.tgz", - "integrity": "sha512-o+ORpgGwaYQXgqGDwd+hkS4PuZ3QnmqMMxRuajK/a38L6fTpcE5GPIfrf+L/KemFzfUpeUQc1rRS1iDBozvnFA==", + "version": "1.5.3", + "resolved": "https://registry.npmjs.org/ufo/-/ufo-1.5.3.tgz", + "integrity": "sha512-Y7HYmWaFwPUmkoQCUIAYpKqkOf+SbVj/2fJJZ4RJMCfZp0rTGwRbzQD+HghfnhKOjL9E01okqz+ncJskGYfBNw==", "dev": true }, + "node_modules/uglify-js": { + "version": "3.17.4", + "resolved": "https://registry.npmjs.org/uglify-js/-/uglify-js-3.17.4.tgz", + "integrity": "sha512-T9q82TJI9e/C1TAxYvfb16xO120tMVFZrGA3f9/P4424DNu6ypK103y0GPFVa17yotwSyZW5iYXgjYHkGrJW/g==", + "dev": true, + "optional": true, + "bin": { + "uglifyjs": "bin/uglifyjs" + }, + "engines": { + "node": ">=0.8.0" + } + }, "node_modules/unbox-primitive": { "version": "1.0.2", "resolved": "https://registry.npmjs.org/unbox-primitive/-/unbox-primitive-1.0.2.tgz", @@ -17470,6 +23723,46 @@ "integrity": "sha512-JlCMO+ehdEIKqlFxk6IfVoAUVmgz7cU7zD/h9XZ0qzeosSHmUJVOzSQvvYSYWXkFXC+IfLKSIffhv0sVZup6pA==", "devOptional": true }, + "node_modules/unicode-canonical-property-names-ecmascript": { + "version": "2.0.0", + "resolved": "https://registry.npmjs.org/unicode-canonical-property-names-ecmascript/-/unicode-canonical-property-names-ecmascript-2.0.0.tgz", + "integrity": 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true, + "engines": { + "node": ">=4" + } + }, + "node_modules/unicode-property-aliases-ecmascript": { + "version": "2.1.0", + "resolved": "https://registry.npmjs.org/unicode-property-aliases-ecmascript/-/unicode-property-aliases-ecmascript-2.1.0.tgz", + "integrity": "sha512-6t3foTQI9qne+OZoVQB/8x8rk2k1eVy1gRXhV3oFQ5T6R1dqQ1xtin3XqSlx3+ATBkliTaR/hHyJBm+LVPNM8w==", + "dev": true, + "engines": { + "node": ">=4" + } + }, "node_modules/unified": { "version": "10.1.2", "resolved": "https://registry.npmjs.org/unified/-/unified-10.1.2.tgz", @@ -17525,6 +23818,18 @@ "node": "^14.17.0 || ^16.13.0 || >=18.0.0" } }, + "node_modules/unique-string": { + "version": "2.0.0", + "resolved": "https://registry.npmjs.org/unique-string/-/unique-string-2.0.0.tgz", + "integrity": "sha512-uNaeirEPvpZWSgzwsPGtU2zVSTrn/8L5q/IexZmH0eH6SA73CmAA5U4GwORTxQAZs95TAXLNqeLoPPNO5gZfWg==", + "dev": true, + "dependencies": { + "crypto-random-string": "^2.0.0" + }, + "engines": { + "node": ">=8" + } + }, "node_modules/unist-util-generated": { "version": "2.0.1", "resolved": "https://registry.npmjs.org/unist-util-generated/-/unist-util-generated-2.0.1.tgz", @@ -17647,11 +23952,35 @@ "node": ">= 0.8" } }, + "node_modules/unplugin": { + "version": "1.10.1", + "resolved": "https://registry.npmjs.org/unplugin/-/unplugin-1.10.1.tgz", + "integrity": "sha512-d6Mhq8RJeGA8UfKCu54Um4lFA0eSaRa3XxdAJg8tIdxbu1ubW0hBCZUL7yI2uGyYCRndvbK8FLHzqy2XKfeMsg==", + "dev": true, + "dependencies": { + "acorn": "^8.11.3", + "chokidar": "^3.6.0", + "webpack-sources": "^3.2.3", + "webpack-virtual-modules": "^0.6.1" + }, + "engines": { + "node": ">=14.0.0" + } + }, "node_modules/unquote": { "version": "1.1.1", "resolved": "https://registry.npmjs.org/unquote/-/unquote-1.1.1.tgz", "integrity": "sha512-vRCqFv6UhXpWxZPyGDh/F3ZpNv8/qo7w6iufLpQg9aKnQ71qM4B5KiI7Mia9COcjEhrO9LueHpMYjYzsWH3OIg==" }, + "node_modules/untildify": { + "version": "4.0.0", + "resolved": "https://registry.npmjs.org/untildify/-/untildify-4.0.0.tgz", + "integrity": "sha512-KK8xQ1mkzZeg9inewmFVDNkg3l5LUhoq9kN6iWYB/CC9YMG8HA+c1Q8HwDe6dEX7kErrEVNVBO3fWsVq5iDgtw==", + "dev": true, + "engines": { + "node": ">=8" + } + }, "node_modules/update-browserslist-db": { "version": "1.0.13", "resolved": "https://registry.npmjs.org/update-browserslist-db/-/update-browserslist-db-1.0.13.tgz", @@ -18639,6 +24968,19 @@ "loose-envify": "^1.0.0" } }, + "node_modules/watchpack": { + "version": "2.4.1", + "resolved": "https://registry.npmjs.org/watchpack/-/watchpack-2.4.1.tgz", + "integrity": "sha512-8wrBCMtVhqcXP2Sup1ctSkga6uc2Bx0IIvKyT7yTFier5AXHooSI+QyQQAtTb7+E0IUCCKyTFmXqdqgum2XWGg==", + "dev": true, + "dependencies": { + "glob-to-regexp": "^0.4.1", + "graceful-fs": "^4.1.2" + }, + "engines": { + "node": ">=10.13.0" + } + }, "node_modules/wcwidth": { "version": "1.0.1", "resolved": "https://registry.npmjs.org/wcwidth/-/wcwidth-1.0.1.tgz", @@ -18689,6 +25031,21 @@ "node": ">=12" } }, + "node_modules/webpack-sources": { + "version": "3.2.3", + "resolved": "https://registry.npmjs.org/webpack-sources/-/webpack-sources-3.2.3.tgz", + "integrity": "sha512-/DyMEOrDgLKKIG0fmvtz+4dUX/3Ghozwgm6iPp8KRhvn+eQf9+Q7GWxVNMk3+uCPWfdXYC4ExGBckIXdFEfH1w==", + "dev": true, + "engines": { + "node": ">=10.13.0" + } + }, + "node_modules/webpack-virtual-modules": { + "version": "0.6.1", + "resolved": "https://registry.npmjs.org/webpack-virtual-modules/-/webpack-virtual-modules-0.6.1.tgz", + "integrity": "sha512-poXpCylU7ExuvZK8z+On3kX+S8o/2dQ/SVYueKA0D4WEMXROXgY8Ez50/bQEUmvoSMMrWcrJqCHuhAbsiwg7Dg==", + "dev": true + }, "node_modules/whatwg-encoding": { "version": "2.0.0", "resolved": "https://registry.npmjs.org/whatwg-encoding/-/whatwg-encoding-2.0.0.tgz", @@ -18938,6 +25295,17 @@ "resolved": "https://registry.npmjs.org/wrappy/-/wrappy-1.0.2.tgz", "integrity": "sha512-l4Sp/DRseor9wL6EvV2+TuQn63dMkPjZ/sp9XkghTEbV9KlPS1xUsZ3u7/IQO4wxtcFB4bgpQPRcR3QCvezPcQ==" }, + "node_modules/write-file-atomic": { + "version": "2.4.3", + "resolved": "https://registry.npmjs.org/write-file-atomic/-/write-file-atomic-2.4.3.tgz", + "integrity": "sha512-GaETH5wwsX+GcnzhPgKcKjJ6M2Cq3/iZp1WyY/X1CSqrW+jVNM9Y7D8EC2sM4ZG/V8wZlSniJnCKWPmBYAucRQ==", + "dev": true, + "dependencies": { + "graceful-fs": "^4.1.11", + "imurmurhash": "^0.1.4", + "signal-exit": "^3.0.2" + } + }, "node_modules/ws": { "version": "7.5.9", "resolved": "https://registry.npmjs.org/ws/-/ws-7.5.9.tgz", diff --git a/package.json b/package.json index 2d107d94..34508959 100644 --- a/package.json +++ b/package.json @@ -22,7 +22,9 @@ "setup": "tsx app/drizzle/migrate.server.ts", "docker:dev": "docker compose -f deploy/docker-compose.dev.yml up", "docker:devrm": "docker compose -f deploy/docker-compose.dev.yml down -v", - "psql:dev": "docker compose -f deploy/docker-compose.dev.yml exec userdb psql -U postgres -d postgres" + "psql:dev": "docker compose -f deploy/docker-compose.dev.yml exec userdb psql -U postgres -d postgres", + "storybook": "storybook dev -p 6006", + "build-storybook": "storybook build" }, "prettier": {}, "eslintIgnore": [ @@ -41,9 +43,12 @@ "@radix-ui/react-dropdown-menu": "^2.0.6", "@radix-ui/react-label": "^2.0.2", "@radix-ui/react-navigation-menu": "^1.1.4", + "@radix-ui/react-popover": "^1.0.7", "@radix-ui/react-radio-group": "^1.1.3", "@radix-ui/react-select": "^2.0.0", "@radix-ui/react-slot": "^1.0.2", + "@radix-ui/react-toggle": "^1.0.3", + "@radix-ui/react-toggle-group": "^1.0.4", "@radix-ui/react-tooltip": "^1.0.7", "@remix-run/css-bundle": "^2.5.1", "@remix-run/node": "^2.5.1", @@ -82,9 +87,19 @@ "valibot": "^0.20.1" }, "devDependencies": { + "@chromatic-com/storybook": "^1.3.3", "@ltd/j-toml": "^1.38.0", "@playwright/test": "^1.43.0", "@remix-run/dev": "^2.5.1", + "@storybook/addon-essentials": "^8.0.9", + "@storybook/addon-interactions": "^8.0.9", + "@storybook/addon-links": "^8.0.9", + "@storybook/addon-onboarding": "^8.0.9", + "@storybook/addon-themes": "^8.0.9", + "@storybook/blocks": "^8.0.9", + "@storybook/react": "^8.0.9", + "@storybook/react-vite": "^8.0.9", + "@storybook/test": "^8.0.9", "@tailwindcss/typography": "^0.5.9", "@testing-library/jest-dom": "^5.16.5", "@testing-library/react": "^14.0.0", @@ -108,10 +123,12 @@ "eslint-plugin-jsx-a11y": "^6.7.1", "eslint-plugin-react": "^7.33.2", "eslint-plugin-react-hooks": "^4.6.0", + "eslint-plugin-storybook": "^0.8.0", "happy-dom": "^9.20.3", "openapi-typescript": "^7.0.0-next.5", "prettier": "^3.2.5", "prettier-plugin-tailwindcss": "^0.5.14", + "storybook": "^8.0.9", "tailwindcss": "^3.4.1", "typescript": "^5.3.3", "vite": "^5.0.11", diff --git a/stories/MoleculeSubForm.stories.tsx b/stories/MoleculeSubForm.stories.tsx new file mode 100644 index 00000000..8328fe00 --- /dev/null +++ b/stories/MoleculeSubForm.stories.tsx @@ -0,0 +1,50 @@ +import type { Meta, StoryObj } from "@storybook/react"; +import { fn, within } from "@storybook/test"; + +import { MoleculeSubForm } from "../app/scenarios/MoleculeSubForm.client"; + +const meta: Meta = { + component: MoleculeSubForm, +}; + +export default meta; + +type Story = StoryObj; + +export const Surface: Story = { + args: { + name: "protein1", + legend: "Protein 1", + description: "Protein 1 description", + actpass: { + active: [], + passive: [], + neighbours: [], + chain: "A", + bodyRestraints: "", + }, + onActPassChange: fn(), + targetChain: "A", + }, + play: async ({ canvasElement }) => { + const canvas = within(canvasElement); + const fileInput: HTMLInputElement = canvas.getByLabelText("Structure", { + selector: "input", + }); + + await loadFileIntoInput("/assets/2oob.pdb", fileInput); + }, +}; + +async function loadFileIntoInput(url: string, fileInput: HTMLInputElement) { + const response = await fetch(url); + if (!response.ok) { + throw new Error("Network response was not ok"); + } + const blob = await response.blob(); + const file = new File([blob], url, { type: "text/plain" }); + const dataTransfer = new DataTransfer(); + dataTransfer.items.add(file); + fileInput.files = dataTransfer.files; + fileInput.dispatchEvent(new Event("change", { bubbles: true })); +} diff --git a/stories/NGLResidues.stories.tsx b/stories/NGLResidues.stories.tsx new file mode 100644 index 00000000..450cbdac --- /dev/null +++ b/stories/NGLResidues.stories.tsx @@ -0,0 +1,67 @@ +import { Meta, StoryObj } from "@storybook/react"; +import { StructureRepresentationType } from "ngl"; +import { useMemo, useState } from "react"; +import { Button } from "~/components/ui/button"; +import { NGLComponent, NGLResidues, NGLStage } from "~/scenarios/Viewer.client"; + +function ResiduesViewer( + props: { structure: File } & Parameters[0], +) { + const { structure, ...residuesprops } = props; + // File does not change + // eslint-disable-next-line react-hooks/exhaustive-deps + const cacheStructure = useMemo(() => structure, []); + const [representation, setRepresentation] = + useState("ball+stick"); + return ( +
+ + + + + + + When switching representation the selected residues should remain + selected. + + + + +
+ ); +} + +const meta: Meta = { + component: NGLResidues, + render: (args, { loaded: { structure } }) => ( + + ), +}; + +export default meta; + +type Story = StoryObj; + +const loaders = [ + async () => { + const url = "/assets/2oob.pdb"; + const response = await fetch(url); + if (!response.ok) { + throw new Error("Network response was not ok"); + } + const blob = await response.blob(); + const structure = new File([blob], url, { type: "text/plain" }); + return { structure }; + }, +]; + +export const Default: Story = { + loaders, + args: { + color: "white", + residues: [932, 935, 936, 949, 950], + representation: "ball+stick", + }, +}; diff --git a/stories/NGLSurface.stories.tsx b/stories/NGLSurface.stories.tsx new file mode 100644 index 00000000..96b467dc --- /dev/null +++ b/stories/NGLSurface.stories.tsx @@ -0,0 +1,118 @@ +import { Meta, StoryObj } from "@storybook/react"; +import { fn } from "@storybook/test"; +import { useMemo } from "react"; +import { NGLComponent, NGLStage, NGLSurface } from "~/scenarios/Viewer.client"; + +function SurfaceViewer( + props: { structure: File } & Parameters[0] & + Parameters[0], +) { + const { structure, onHover, onMouseLeave, onPick, ...surfaceprops } = props; + // File does not change + // eslint-disable-next-line react-hooks/exhaustive-deps + const cacheStructure = useMemo(() => structure, []); + return ( +
+ + + + + +
    +
  • Active: {surfaceprops.activeColor}
  • +
  • Passive: {surfaceprops.passiveColor}
  • +
  • Neighbours: {surfaceprops.neighboursColor}
  • +
  • Default: {surfaceprops.defaultColor}
  • +
  • Highlight: {surfaceprops.highlightColor}
  • +
+
+ ); +} + +const meta: Meta = { + component: SurfaceViewer, + render: (args, { loaded: { structure } }) => ( + + ), +}; + +export default meta; + +type Story = StoryObj; + +const loaders = [ + async () => { + const url = "/assets/2oob.pdb"; + const response = await fetch(url); + if (!response.ok) { + throw new Error("Network response was not ok"); + } + const blob = await response.blob(); + const structure = new File([blob], url, { type: "text/plain" }); + return { structure }; + }, +]; + +export const NoSelection: Story = { + loaders, + args: { + active: [], + }, +}; + +export const WithSelection: Story = { + loaders, + args: { + active: [932, 935, 936, 949, 950, 952, 958], + activeColor: "green", + passive: [970], + neighbours: [971, 972], + passiveColor: "yellow", + neighboursColor: "orange", + defaultColor: "white", + }, +}; + +export const WithHighlight: Story = { + loaders, + args: { + active: [932, 935, 936, 949, 950, 952, 958], + activeColor: "green", + passive: [970], + neighbours: [971, 972], + passiveColor: "yellow", + neighboursColor: "orange", + defaultColor: "white", + highlight: 971, + highlightColor: "red", + }, +}; + +export const Pickable: Story = { + loaders, + args: { + active: [932, 935, 936, 949, 950, 952, 958], + activeColor: "green", + passive: [970], + neighbours: [971, 972], + passiveColor: "yellow", + neighboursColor: "orange", + defaultColor: "white", + onPick: fn(), + }, +}; + +export const Hoverable: Story = { + loaders, + args: { + active: [932, 935, 936, 949, 950, 952, 958], + activeColor: "green", + passive: [970], + neighbours: [971, 972], + passiveColor: "yellow", + neighboursColor: "orange", + defaultColor: "white", + onHover: fn(), + onMouseLeave: fn(), + }, +}; diff --git a/stories/ResiduesSelect.stories.tsx b/stories/ResiduesSelect.stories.tsx new file mode 100644 index 00000000..5c3d5e59 --- /dev/null +++ b/stories/ResiduesSelect.stories.tsx @@ -0,0 +1,202 @@ +import type { Meta, StoryObj } from "@storybook/react"; +import { fn } from "@storybook/test"; + +import { ResiduesSelect } from "../app/scenarios/ResiduesSelect"; + +const meta: Meta = { + component: ResiduesSelect, +}; + +export default meta; + +type Story = StoryObj; + +export const Surface: Story = { + args: { + showActive: false, + showPassive: true, + disabledPassive: true, + options: [ + { + resno: 1, + seq: "A", + surface: true, + }, + { + resno: 2, + seq: "T", + surface: false, + }, + ], + selected: { + act: [], + pass: [1], + neighbours: [], + }, + onChange: fn(), + onHover: fn(), + highlight: undefined, + }, +}; + +export const ActiveOnly: Story = { + args: { + showActive: true, + showPassive: false, + options: [ + { + resno: 1, + seq: "A", + surface: true, + }, + { + resno: 2, + seq: "T", + surface: false, + }, + { + resno: 3, + seq: "G", + surface: true, + }, + ], + selected: { + act: [3], + pass: [], + neighbours: [], + }, + onChange: fn(), + onHover: fn(), + highlight: undefined, + }, +}; + +export const PassiveOnly: Story = { + args: { + showActive: false, + showPassive: true, + options: [ + { + resno: 1, + seq: "A", + surface: true, + }, + { + resno: 2, + seq: "T", + surface: false, + }, + { + resno: 3, + seq: "G", + surface: true, + }, + ], + selected: { + act: [], + pass: [1], + neighbours: [], + }, + onChange: fn(), + onHover: fn(), + highlight: undefined, + }, +}; + +export const ActiveAndDisabledPassive: Story = { + args: { + showActive: true, + showPassive: true, + disabledActive: false, + disabledPassive: true, + options: [ + { + resno: 1, + seq: "A", + surface: true, + }, + { + resno: 2, + seq: "T", + surface: true, + }, + { + resno: 3, + seq: "G", + surface: true, + }, + { + resno: 4, + seq: "C", + surface: true, + }, + ], + selected: { + act: [3], + pass: [1, 4], + neighbours: [], + }, + onChange: fn(), + onHover: fn(), + highlight: undefined, + }, +}; + +// Do not need ActiveDisabledAndPassive as that is not wanted + +export const ActiveAndPassive: Story = { + args: { + showActive: true, + showPassive: true, + options: [ + { + resno: 1, + seq: "A", + surface: true, + }, + { + resno: 2, + seq: "T", + surface: true, + }, + { + resno: 3, + seq: "G", + surface: true, + }, + { + resno: 4, + seq: "C", + surface: true, + }, + ], + selected: { + act: [3], + pass: [1], + neighbours: [], + }, + onChange: fn(), + onHover: fn(), + highlight: undefined, + }, +}; + +export const LongList: Story = { + args: { + showActive: true, + showPassive: true, + options: Array.from({ length: 100 }, (_, i) => ({ + resno: i + 42, + seq: "X", + surface: true, + })), + selected: { + act: [43, 111], + pass: [51, 78], + neighbours: [], + }, + onChange: fn(), + onHover: fn(), + highlight: undefined, + }, +}; diff --git a/stories/assets/2oob.pdb b/stories/assets/2oob.pdb new file mode 100644 index 00000000..4aec693a --- /dev/null +++ b/stories/assets/2oob.pdb @@ -0,0 +1,926 @@ +ATOM 1 N LEU A 929 26.117 -5.693 15.769 1.00 29.81 A N +ATOM 2 CA LEU A 929 27.153 -4.857 15.061 1.00 29.93 A C +ATOM 3 C LEU A 929 26.486 -3.835 14.143 1.00 29.74 A C +ATOM 4 O LEU A 929 26.790 -2.625 14.181 1.00 29.50 A O +ATOM 5 CB LEU A 929 28.096 -5.742 14.248 1.00 30.37 A C +ATOM 6 CG LEU A 929 29.617 -5.471 14.154 1.00 28.52 A C +ATOM 7 CD1 LEU A 929 30.109 -5.719 12.711 1.00 27.72 A C +ATOM 8 CD2 LEU A 929 30.111 -4.134 14.702 1.00 25.22 A C +ATOM 9 N GLU A 930 25.592 -4.316 13.283 1.00 29.50 A N +ATOM 10 CA GLU A 930 24.720 -3.411 12.581 1.00 29.52 A C +ATOM 11 C GLU A 930 23.799 -3.032 13.722 1.00 28.84 A C +ATOM 12 O GLU A 930 23.834 -3.649 14.790 1.00 30.73 A O +ATOM 13 CB GLU A 930 24.057 -4.070 11.368 1.00 30.31 A C +ATOM 14 CG GLU A 930 25.092 -4.539 10.271 1.00 32.29 A C +ATOM 15 CD GLU A 930 26.361 -3.610 10.128 1.00 33.77 A C +ATOM 16 OE1 GLU A 930 26.199 -2.374 9.952 1.00 35.75 A O +ATOM 17 OE2 GLU A 930 27.517 -4.127 10.199 1.00 32.22 A O +ATOM 18 N ASN A 931 23.064 -1.967 13.629 1.00 27.08 A N +ATOM 19 CA ASN A 931 22.627 -1.491 14.972 1.00 24.79 A C +ATOM 20 C ASN A 931 21.131 -1.716 15.039 1.00 21.71 A C +ATOM 21 O ASN A 931 20.392 -0.807 15.330 1.00 20.44 A O +ATOM 22 CB ASN A 931 23.051 -0.021 15.168 1.00 24.40 A C +ATOM 23 CG ASN A 931 23.184 0.410 16.651 1.00 25.91 A C +ATOM 24 OD1 ASN A 931 23.037 -0.377 17.613 1.00 26.29 A O +ATOM 25 ND2 ASN A 931 23.449 1.699 16.827 1.00 26.39 A N +ATOM 26 N VAL A 932 20.715 -2.967 14.802 1.00 19.44 A N +ATOM 27 CA VAL A 932 19.317 -3.241 14.414 1.00 18.49 A C +ATOM 28 C VAL A 932 18.230 -2.792 15.396 1.00 16.51 A C +ATOM 29 O VAL A 932 17.280 -2.124 14.973 1.00 16.08 A O +ATOM 30 CB VAL A 932 19.089 -4.686 13.880 1.00 19.25 A C +ATOM 31 CG1 VAL A 932 17.615 -4.913 13.531 1.00 20.18 A C +ATOM 32 CG2 VAL A 932 19.942 -4.876 12.601 1.00 20.29 A C +ATOM 33 N ASP A 933 18.390 -3.151 16.665 1.00 14.44 A N +ATOM 34 CA ASP A 933 17.419 -2.787 17.711 1.00 13.12 A C +ATOM 35 C ASP A 933 17.374 -1.266 17.822 1.00 11.75 A C +ATOM 36 O ASP A 933 16.299 -0.698 17.955 1.00 10.97 A O +ATOM 37 CB ASP A 933 17.827 -3.363 19.061 1.00 12.60 A C +ATOM 38 CG ASP A 933 17.624 -4.878 19.165 1.00 14.67 A C +ATOM 39 OD1 ASP A 933 18.073 -5.413 20.195 1.00 14.47 A O +ATOM 40 OD2 ASP A 933 17.023 -5.511 18.251 1.00 16.37 A O +ATOM 41 N ALA A 934 18.540 -0.603 17.782 1.00 10.80 A N +ATOM 42 CA ALA A 934 18.553 0.895 17.848 1.00 11.56 A C +ATOM 43 C ALA A 934 17.863 1.493 16.630 1.00 12.27 A C +ATOM 44 O ALA A 934 17.145 2.501 16.753 1.00 12.08 A O +ATOM 45 CB ALA A 934 20.003 1.474 17.974 1.00 12.40 A C +ATOM 46 N LYS A 935 18.070 0.875 15.462 1.00 11.97 A N +ATOM 47 CA LYS A 935 17.440 1.342 14.211 1.00 12.60 A C +ATOM 48 C LYS A 935 15.921 1.104 14.231 1.00 12.45 A C +ATOM 49 O LYS A 935 15.166 1.992 13.818 1.00 12.53 A O +ATOM 50 CB LYS A 935 18.088 0.668 12.985 1.00 13.38 A C +ATOM 51 CG LYS A 935 19.521 1.152 12.754 1.00 13.04 A C +ATOM 52 CD LYS A 935 20.121 0.542 11.509 1.00 13.17 A C +ATOM 53 CE LYS A 935 21.534 1.063 11.268 1.00 14.86 A C +ATOM 54 NZ LYS A 935 22.026 0.174 10.138 1.00 16.40 A N +ATOM 55 N ILE A 936 15.488 -0.050 14.751 1.00 10.93 A N +ATOM 56 CA ILE A 936 14.052 -0.297 14.943 1.00 12.45 A C +ATOM 57 C ILE A 936 13.452 0.787 15.847 1.00 12.85 A C +ATOM 58 O ILE A 936 12.435 1.394 15.502 1.00 12.24 A O +ATOM 59 CB ILE A 936 13.745 -1.704 15.528 1.00 12.04 A C +ATOM 60 CG1 ILE A 936 14.094 -2.804 14.500 1.00 13.51 A C +ATOM 61 CG2 ILE A 936 12.259 -1.812 15.942 1.00 10.62 A C +ATOM 62 CD1 ILE A 936 14.188 -4.227 15.098 1.00 13.79 A C +ATOM 63 N ALA A 937 14.092 1.012 16.997 1.00 12.41 A N +ATOM 64 CA ALA A 937 13.563 1.943 17.992 1.00 13.27 A C +ATOM 65 C ALA A 937 13.434 3.345 17.380 1.00 13.70 A C +ATOM 66 O ALA A 937 12.383 3.988 17.537 1.00 13.87 A O +ATOM 67 CB ALA A 937 14.461 1.986 19.264 1.00 13.52 A C +ATOM 68 N LYS A 938 14.487 3.797 16.709 1.00 13.33 A N +ATOM 69 CA LYS A 938 14.516 5.135 16.063 1.00 14.79 A C +ATOM 70 C LYS A 938 13.353 5.313 15.084 1.00 14.31 A C +ATOM 71 O LYS A 938 12.597 6.313 15.156 1.00 14.53 A O +ATOM 72 CB LYS A 938 15.835 5.361 15.333 1.00 14.78 A C +ATOM 73 CG LYS A 938 15.955 6.769 14.630 1.00 15.12 A C +ATOM 74 CD LYS A 938 17.317 6.902 13.974 1.00 16.87 A C +ATOM 75 CE LYS A 938 17.465 8.161 13.137 1.00 19.98 A C +ATOM 76 NZ LYS A 938 17.004 9.352 13.922 1.00 20.21 A N +ATOM 77 N LEU A 939 13.174 4.350 14.179 1.00 13.07 A N +ATOM 78 CA LEU A 939 12.091 4.484 13.203 1.00 12.80 A C +ATOM 79 C LEU A 939 10.698 4.340 13.820 1.00 13.35 A C +ATOM 80 O LEU A 939 9.778 5.053 13.430 1.00 13.43 A O +ATOM 81 CB LEU A 939 12.298 3.578 11.990 1.00 12.68 A C +ATOM 82 CG LEU A 939 13.504 3.935 11.110 1.00 13.83 A C +ATOM 83 CD1 LEU A 939 13.793 2.730 10.115 1.00 16.52 A C +ATOM 84 CD2 LEU A 939 13.330 5.286 10.403 1.00 14.32 A C +ATOM 85 N MET A 940 10.559 3.456 14.808 1.00 14.90 A N +ATOM 86 CA MET A 940 9.319 3.388 15.602 1.00 15.24 A C +ATOM 87 C MET A 940 9.022 4.781 16.182 1.00 16.41 A C +ATOM 88 O MET A 940 7.882 5.233 16.135 1.00 17.62 A O +ATOM 89 CB MET A 940 9.439 2.354 16.713 1.00 14.52 A C +ATOM 90 CG MET A 940 9.360 0.917 16.203 1.00 14.63 A C +ATOM 91 SD MET A 940 9.512 -0.265 17.578 1.00 17.42 A S +ATOM 92 CE MET A 940 7.976 0.001 18.479 1.00 19.11 A C +ATOM 93 N GLY A 941 10.055 5.478 16.647 1.00 16.53 A N +ATOM 94 CA GLY A 941 9.886 6.815 17.255 1.00 17.00 A C +ATOM 95 C GLY A 941 9.341 7.837 16.286 1.00 17.76 A C +ATOM 96 O GLY A 941 8.689 8.788 16.705 1.00 18.57 A O +ATOM 97 N GLU A 942 9.565 7.631 14.985 1.00 17.82 A N +ATOM 98 CA GLU A 942 9.040 8.532 13.953 1.00 19.51 A C +ATOM 99 C GLU A 942 7.565 8.333 13.637 1.00 20.28 A C +ATOM 100 O GLU A 942 7.002 9.064 12.826 1.00 21.60 A O +ATOM 101 CB GLU A 942 9.904 8.492 12.676 1.00 19.05 A C +ATOM 102 CG GLU A 942 11.333 8.876 12.955 1.00 19.58 A C +ATOM 103 CD GLU A 942 12.249 8.785 11.754 1.00 21.50 A C +ATOM 104 OE1 GLU A 942 11.761 8.704 10.608 1.00 19.37 A O +ATOM 105 OE2 GLU A 942 13.487 8.789 11.974 1.00 20.59 A O +ATOM 106 N GLY A 943 6.937 7.368 14.282 1.00 21.07 A N +ATOM 107 CA GLY A 943 5.496 7.253 14.259 1.00 22.65 A C +ATOM 108 C GLY A 943 5.041 6.006 13.529 1.00 22.38 A C +ATOM 109 O GLY A 943 3.983 6.009 12.905 1.00 23.50 A O +ATOM 110 N TYR A 944 5.840 4.947 13.596 1.00 21.26 A N +ATOM 111 CA TYR A 944 5.524 3.703 12.905 1.00 20.43 A C +ATOM 112 C TYR A 944 5.509 2.503 13.852 1.00 20.65 A C +ATOM 113 O TYR A 944 6.254 2.420 14.838 1.00 19.42 A O +ATOM 114 CB TYR A 944 6.488 3.451 11.715 1.00 21.14 A C +ATOM 115 CG TYR A 944 6.569 4.594 10.759 1.00 20.12 A C +ATOM 116 CD1 TYR A 944 5.514 4.852 9.858 1.00 20.39 A C +ATOM 117 CD2 TYR A 944 7.669 5.455 10.763 1.00 17.96 A C +ATOM 118 CE1 TYR A 944 5.560 5.940 8.995 1.00 20.13 A C +ATOM 119 CE2 TYR A 944 7.729 6.556 9.868 1.00 21.63 A C +ATOM 120 CZ TYR A 944 6.644 6.782 8.993 1.00 22.12 A C +ATOM 121 OH TYR A 944 6.665 7.842 8.096 1.00 23.64 A O +ATOM 122 N ALA A 945 4.668 1.542 13.518 1.00 19.66 A N +ATOM 123 CA ALA A 945 4.487 0.376 14.355 1.00 19.88 A C +ATOM 124 C ALA A 945 5.650 -0.632 14.237 1.00 19.21 A C +ATOM 125 O ALA A 945 6.300 -0.720 13.198 1.00 18.25 A O +ATOM 126 CB ALA A 945 3.144 -0.295 13.981 1.00 19.79 A C +ATOM 127 N PHE A 946 5.897 -1.397 15.294 1.00 18.98 A N +ATOM 128 CA PHE A 946 6.998 -2.356 15.297 1.00 19.43 A C +ATOM 129 C PHE A 946 7.065 -3.276 14.054 1.00 19.51 A C +ATOM 130 O PHE A 946 8.126 -3.399 13.424 1.00 18.02 A O +ATOM 131 CB PHE A 946 7.050 -3.190 16.566 1.00 18.98 A C +ATOM 132 CG PHE A 946 8.032 -4.340 16.475 1.00 22.17 A C +ATOM 133 CD1 PHE A 946 9.391 -4.133 16.691 1.00 18.72 A C +ATOM 134 CD2 PHE A 946 7.588 -5.625 16.124 1.00 22.44 A C +ATOM 135 CE1 PHE A 946 10.288 -5.174 16.589 1.00 23.37 A C +ATOM 136 CE2 PHE A 946 8.480 -6.682 16.018 1.00 22.89 A C +ATOM 137 CZ PHE A 946 9.844 -6.452 16.251 1.00 21.97 A C +ATOM 138 N GLU A 947 5.961 -3.939 13.703 1.00 19.24 A N +ATOM 139 CA GLU A 947 6.017 -4.883 12.554 1.00 20.13 A C +ATOM 140 C GLU A 947 6.348 -4.203 11.217 1.00 19.21 A C +ATOM 141 O GLU A 947 7.103 -4.748 10.429 1.00 19.28 A O +ATOM 142 CB GLU A 947 4.719 -5.702 12.420 1.00 21.09 A C +ATOM 143 CG GLU A 947 4.296 -6.425 13.711 1.00 27.05 A C +ATOM 144 CD GLU A 947 5.158 -7.633 14.106 1.00 35.91 A C +ATOM 145 OE1 GLU A 947 4.779 -8.300 15.118 1.00 39.48 A O +ATOM 146 OE2 GLU A 947 6.191 -7.941 13.432 1.00 39.08 A O +ATOM 147 N GLU A 948 5.770 -3.031 10.967 1.00 19.19 A N +ATOM 148 CA GLU A 948 6.116 -2.205 9.804 1.00 20.22 A C +ATOM 149 C GLU A 948 7.616 -1.862 9.746 1.00 17.76 A C +ATOM 150 O GLU A 948 8.274 -1.959 8.703 1.00 16.39 A O +ATOM 151 CB GLU A 948 5.338 -0.882 9.866 1.00 20.14 A C +ATOM 152 CG GLU A 948 3.900 -1.009 9.415 1.00 24.52 A C +ATOM 153 CD GLU A 948 3.051 0.214 9.756 1.00 25.97 A C +ATOM 154 OE1 GLU A 948 2.014 0.373 9.085 1.00 31.69 A O +ATOM 155 OE2 GLU A 948 3.390 1.002 10.707 1.00 34.37 A O +ATOM 156 N VAL A 949 8.139 -1.407 10.880 1.00 16.09 A N +ATOM 157 CA VAL A 949 9.543 -0.971 10.944 1.00 14.97 A C +ATOM 158 C VAL A 949 10.470 -2.163 10.715 1.00 15.05 A C +ATOM 159 O VAL A 949 11.378 -2.069 9.914 1.00 14.59 A O +ATOM 160 CB VAL A 949 9.885 -0.287 12.299 1.00 14.53 A C +ATOM 161 CG1 VAL A 949 11.407 -0.086 12.418 1.00 13.30 A C +ATOM 162 CG2 VAL A 949 9.145 1.049 12.424 1.00 12.58 A C +ATOM 163 N LYS A 950 10.233 -3.258 11.434 1.00 14.97 A N +ATOM 164 CA LYS A 950 10.988 -4.495 11.256 1.00 17.41 A C +ATOM 165 C LYS A 950 11.030 -4.894 9.774 1.00 16.91 A C +ATOM 166 O LYS A 950 12.105 -5.134 9.231 1.00 16.16 A O +ATOM 167 CB LYS A 950 10.367 -5.641 12.076 1.00 17.57 A C +ATOM 168 CG LYS A 950 11.251 -6.893 12.116 1.00 20.07 A C +ATOM 169 CD LYS A 950 10.527 -8.075 12.753 1.00 19.78 A C +ATOM 170 CE LYS A 950 11.349 -9.382 12.620 1.00 20.99 A C +ATOM 171 NZ LYS A 950 12.620 -9.348 13.459 1.00 20.48 A N +ATOM 172 N ARG A 951 9.845 -4.978 9.161 1.00 16.72 A N +ATOM 173 CA ARG A 951 9.717 -5.342 7.758 1.00 17.21 A C +ATOM 174 C ARG A 951 10.410 -4.348 6.809 1.00 16.86 A C +ATOM 175 O ARG A 951 11.105 -4.763 5.873 1.00 16.23 A O +ATOM 176 CB ARG A 951 8.239 -5.487 7.406 1.00 17.88 A C +ATOM 177 CG ARG A 951 8.001 -5.912 5.972 1.00 22.11 A C +ATOM 178 CD ARG A 951 8.687 -7.252 5.655 1.00 28.39 A C +ATOM 179 NE ARG A 951 8.474 -7.591 4.250 1.00 32.90 A N +ATOM 180 CZ ARG A 951 9.301 -8.324 3.518 1.00 34.41 A C +ATOM 181 NH1 ARG A 951 10.422 -8.811 4.056 1.00 33.89 A N +ATOM 182 NH2 ARG A 951 9.008 -8.549 2.236 1.00 35.66 A N +ATOM 183 N ALA A 952 10.219 -3.044 7.031 1.00 15.72 A N +ATOM 184 CA ALA A 952 10.937 -2.038 6.199 1.00 16.25 A C +ATOM 185 C ALA A 952 12.470 -2.146 6.305 1.00 15.97 A C +ATOM 186 O ALA A 952 13.177 -1.990 5.303 1.00 15.79 A O +ATOM 187 CB ALA A 952 10.486 -0.595 6.558 1.00 16.07 A C +ATOM 188 N LEU A 953 12.997 -2.367 7.514 1.00 16.55 A N +ATOM 189 CA LEU A 953 14.457 -2.504 7.673 1.00 17.11 A C +ATOM 190 C LEU A 953 14.980 -3.734 6.953 1.00 18.12 A C +ATOM 191 O LEU A 953 16.060 -3.679 6.350 1.00 18.20 A O +ATOM 192 CB LEU A 953 14.880 -2.533 9.148 1.00 17.29 A C +ATOM 193 CG LEU A 953 14.969 -1.147 9.802 1.00 17.83 A C +ATOM 194 CD1 LEU A 953 15.209 -1.242 11.298 1.00 20.95 A C +ATOM 195 CD2 LEU A 953 16.069 -0.334 9.183 1.00 17.11 A C +ATOM 196 N GLU A 954 14.217 -4.824 7.028 1.00 19.06 A N +ATOM 197 CA GLU A 954 14.517 -6.054 6.258 1.00 20.96 A C +ATOM 198 C GLU A 954 14.609 -5.749 4.767 1.00 20.50 A C +ATOM 199 O GLU A 954 15.634 -6.012 4.138 1.00 21.21 A O +ATOM 200 CB GLU A 954 13.401 -7.057 6.402 1.00 21.98 A C +ATOM 201 CG GLU A 954 13.321 -7.830 7.658 1.00 27.29 A C +ATOM 202 CD GLU A 954 12.130 -8.767 7.572 1.00 33.92 A C +ATOM 203 OE1 GLU A 954 12.101 -9.564 6.595 1.00 36.67 A O +ATOM 204 OE2 GLU A 954 11.212 -8.667 8.423 1.00 34.94 A O +ATOM 205 N ILE A 955 13.540 -5.181 4.222 1.00 19.90 A N +ATOM 206 CA ILE A 955 13.510 -4.794 2.809 1.00 19.70 A C +ATOM 207 C ILE A 955 14.711 -3.898 2.465 1.00 19.53 A C +ATOM 208 O ILE A 955 15.399 -4.135 1.459 1.00 19.01 A O +ATOM 209 CB ILE A 955 12.143 -4.176 2.424 1.00 19.91 A C +ATOM 210 CG1 ILE A 955 11.039 -5.239 2.467 1.00 21.27 A C +ATOM 211 CG2 ILE A 955 12.208 -3.484 1.069 1.00 18.24 A C +ATOM 212 CD1 ILE A 955 9.660 -4.667 2.389 1.00 24.83 A C +ATOM 213 N ALA A 956 14.975 -2.892 3.308 1.00 18.89 A N +ATOM 214 CA ALA A 956 16.082 -1.937 3.123 1.00 19.22 A C +ATOM 215 C ALA A 956 17.500 -2.446 3.433 1.00 19.57 A C +ATOM 216 O ALA A 956 18.461 -1.690 3.343 1.00 19.17 A O +ATOM 217 CB ALA A 956 15.809 -0.632 3.950 1.00 18.14 A C +ATOM 218 N GLN A 957 17.620 -3.708 3.831 1.00 20.22 A N +ATOM 219 CA GLN A 957 18.905 -4.294 4.193 1.00 21.37 A C +ATOM 220 C GLN A 957 19.596 -3.419 5.242 1.00 21.18 A C +ATOM 221 O GLN A 957 20.784 -3.086 5.128 1.00 21.60 A O +ATOM 222 CB GLN A 957 19.746 -4.561 2.928 1.00 20.73 A C +ATOM 223 CG GLN A 957 18.972 -5.415 1.870 1.00 21.88 A C +ATOM 224 CD GLN A 957 19.811 -5.776 0.625 1.00 25.70 A C +ATOM 225 OE1 GLN A 957 19.351 -6.498 -0.270 1.00 31.58 A O +ATOM 226 NE2 GLN A 957 21.026 -5.251 0.555 1.00 29.87 A N +ATOM 227 N ASN A 958 18.803 -3.022 6.256 1.00 20.59 A N +ATOM 228 CA ASN A 958 19.249 -2.232 7.416 1.00 20.10 A C +ATOM 229 C ASN A 958 19.674 -0.776 7.150 1.00 19.50 A C +ATOM 230 O ASN A 958 20.182 -0.102 8.037 1.00 18.91 A O +ATOM 231 CB ASN A 958 20.281 -3.017 8.264 1.00 20.82 A C +ATOM 232 CG ASN A 958 19.666 -4.225 8.922 1.00 23.32 A C +ATOM 233 OD1 ASN A 958 18.446 -4.258 9.166 1.00 24.18 A O +ATOM 234 ND2 ASN A 958 20.508 -5.253 9.227 1.00 24.54 A N +ATOM 235 N ASN A 959 19.373 -0.265 5.947 1.00 19.30 A N +ATOM 236 CA ASN A 959 19.645 1.143 5.638 1.00 19.26 A C +ATOM 237 C ASN A 959 18.477 1.988 6.176 1.00 18.66 A C +ATOM 238 O ASN A 959 17.332 1.845 5.702 1.00 17.58 A O +ATOM 239 CB ASN A 959 19.836 1.336 4.114 1.00 19.54 A C +ATOM 240 CG ASN A 959 20.173 2.750 3.750 1.00 20.03 A C +ATOM 241 OD1 ASN A 959 19.445 3.664 4.093 1.00 20.86 A O +ATOM 242 ND2 ASN A 959 21.289 2.944 3.046 1.00 21.48 A N +ATOM 243 N VAL A 960 18.770 2.855 7.154 1.00 17.79 A N +ATOM 244 CA VAL A 960 17.743 3.633 7.862 1.00 17.46 A C +ATOM 245 C VAL A 960 17.036 4.590 6.937 1.00 17.34 A C +ATOM 246 O VAL A 960 15.819 4.682 6.982 1.00 16.71 A O +ATOM 247 CB VAL A 960 18.296 4.401 9.100 1.00 17.58 A C +ATOM 248 CG1 VAL A 960 17.226 5.391 9.666 1.00 17.58 A C +ATOM 249 CG2 VAL A 960 18.614 3.420 10.173 1.00 18.59 A C +ATOM 250 N GLU A 961 17.818 5.260 6.081 1.00 18.12 A N +ATOM 251 CA GLU A 961 17.302 6.244 5.123 1.00 18.73 A C +ATOM 252 C GLU A 961 16.330 5.565 4.142 1.00 17.37 A C +ATOM 253 O GLU A 961 15.257 6.080 3.820 1.00 15.69 A O +ATOM 254 CB GLU A 961 18.479 6.883 4.366 1.00 20.54 A C +ATOM 255 CG GLU A 961 19.542 7.652 5.219 1.00 25.83 A C +ATOM 256 CD GLU A 961 20.286 6.835 6.339 1.00 34.48 A C +ATOM 257 OE1 GLU A 961 20.618 5.618 6.174 1.00 33.46 A O +ATOM 258 OE2 GLU A 961 20.574 7.457 7.412 1.00 37.58 A O +ATOM 259 N VAL A 962 16.696 4.379 3.682 1.00 16.06 A N +ATOM 260 CA VAL A 962 15.821 3.643 2.740 1.00 14.62 A C +ATOM 261 C VAL A 962 14.570 3.109 3.422 1.00 13.77 A C +ATOM 262 O VAL A 962 13.469 3.263 2.888 1.00 12.59 A O +ATOM 263 CB VAL A 962 16.586 2.517 2.020 1.00 14.95 A C +ATOM 264 CG1 VAL A 962 15.604 1.636 1.219 1.00 16.20 A C +ATOM 265 CG2 VAL A 962 17.646 3.129 1.113 1.00 15.05 A C +ATOM 266 N ALA A 963 14.725 2.501 4.603 1.00 13.06 A N +ATOM 267 CA ALA A 963 13.558 2.036 5.372 1.00 12.62 A C +ATOM 268 C ALA A 963 12.602 3.200 5.638 1.00 13.30 A C +ATOM 269 O ALA A 963 11.372 3.030 5.594 1.00 12.87 A O +ATOM 270 CB ALA A 963 14.017 1.460 6.683 1.00 12.30 A C +ATOM 271 N ARG A 964 13.166 4.363 5.970 1.00 13.98 A N +ATOM 272 CA ARG A 964 12.335 5.544 6.280 1.00 14.53 A C +ATOM 273 C ARG A 964 11.527 5.917 5.052 1.00 15.51 A C +ATOM 274 O ARG A 964 10.322 6.171 5.163 1.00 16.48 A O +ATOM 275 CB ARG A 964 13.184 6.742 6.742 1.00 14.45 A C +ATOM 276 CG ARG A 964 12.313 8.033 6.924 1.00 15.17 A C +ATOM 277 CD ARG A 964 13.161 9.205 7.412 1.00 16.13 A C +ATOM 278 NE ARG A 964 13.790 8.946 8.709 1.00 18.52 A N +ATOM 279 CZ ARG A 964 15.095 8.886 8.939 1.00 21.13 A C +ATOM 280 NH1 ARG A 964 15.988 9.052 7.960 1.00 23.08 A N +ATOM 281 NH2 ARG A 964 15.506 8.633 10.165 1.00 23.86 A N +ATOM 282 N SER A 965 12.179 5.935 3.882 1.00 16.02 A N +ATOM 283 CA SER A 965 11.463 6.232 2.635 1.00 16.76 A C +ATOM 284 C SER A 965 10.337 5.235 2.375 1.00 16.38 A C +ATOM 285 O SER A 965 9.268 5.613 1.915 1.00 16.10 A O +ATOM 286 CB SER A 965 12.414 6.288 1.441 1.00 16.78 A C +ATOM 287 OG SER A 965 13.381 7.313 1.601 1.00 18.77 A O +ATOM 288 N ILE A 966 10.565 3.960 2.688 1.00 16.68 A N +ATOM 289 CA ILE A 966 9.520 2.951 2.545 1.00 16.83 A C +ATOM 290 C ILE A 966 8.338 3.233 3.471 1.00 16.76 A C +ATOM 291 O ILE A 966 7.189 3.230 3.043 1.00 17.67 A O +ATOM 292 CB ILE A 966 10.076 1.522 2.751 1.00 17.17 A C +ATOM 293 CG1 ILE A 966 11.063 1.174 1.616 1.00 17.80 A C +ATOM 294 CG2 ILE A 966 8.929 0.499 2.906 1.00 16.81 A C +ATOM 295 CD1 ILE A 966 11.973 -0.020 1.936 1.00 16.60 A C +ATOM 296 N LEU A 967 8.635 3.533 4.731 1.00 17.19 A N +ATOM 297 CA LEU A 967 7.627 3.764 5.731 1.00 17.32 A C +ATOM 298 C LEU A 967 6.756 4.987 5.370 1.00 18.40 A C +ATOM 299 O LEU A 967 5.510 4.943 5.494 1.00 17.81 A O +ATOM 300 CB LEU A 967 8.310 3.930 7.092 1.00 17.93 A C +ATOM 301 CG LEU A 967 8.896 2.623 7.660 1.00 17.63 A C +ATOM 302 CD1 LEU A 967 9.919 2.883 8.805 1.00 14.10 A C +ATOM 303 CD2 LEU A 967 7.760 1.644 8.073 1.00 17.92 A C +ATOM 304 N ARG A 968 7.409 6.044 4.893 1.00 18.46 A N +ATOM 305 CA ARG A 968 6.708 7.288 4.490 1.00 20.93 A C +ATOM 306 C ARG A 968 5.846 7.060 3.263 1.00 21.84 A C +ATOM 307 O ARG A 968 4.677 7.513 3.190 1.00 22.36 A O +ATOM 308 CB ARG A 968 7.692 8.402 4.171 1.00 20.14 A C +ATOM 309 CG ARG A 968 8.350 8.960 5.402 1.00 25.01 A C +ATOM 310 CD ARG A 968 9.139 10.223 5.118 1.00 29.15 A C +ATOM 311 NE ARG A 968 9.661 10.700 6.389 1.00 33.37 A N +ATOM 312 CZ ARG A 968 10.520 11.700 6.566 1.00 32.20 A C +ATOM 313 NH1 ARG A 968 10.908 12.008 7.804 1.00 27.89 A N +ATOM 314 NH2 ARG A 968 10.985 12.375 5.523 1.00 33.89 A N +ATOM 315 N GLU A 969 6.425 6.359 2.300 1.00 22.31 A N +ATOM 316 CA GLU A 969 5.743 6.109 1.036 1.00 24.33 A C +ATOM 317 C GLU A 969 4.463 5.289 1.207 1.00 24.53 A C +ATOM 318 O GLU A 969 3.438 5.560 0.556 1.00 24.35 A O +ATOM 319 CB GLU A 969 6.678 5.360 0.085 1.00 24.06 A C +ATOM 320 CG GLU A 969 6.127 5.244 -1.347 1.00 29.10 A C +ATOM 321 CD GLU A 969 6.044 6.577 -2.082 1.00 34.27 A C +ATOM 322 OE1 GLU A 969 5.378 6.619 -3.129 1.00 39.51 A O +ATOM 323 OE2 GLU A 969 6.639 7.578 -1.637 1.00 37.63 A O +ATOM 324 N PHE A 970 4.525 4.273 2.052 1.00 24.55 A N +ATOM 325 CA PHE A 970 3.456 3.286 2.101 1.00 25.97 A C +ATOM 326 C PHE A 970 2.610 3.345 3.363 1.00 27.21 A C +ATOM 327 O PHE A 970 1.783 2.479 3.595 1.00 26.50 A O +ATOM 328 CB PHE A 970 4.023 1.890 1.831 1.00 26.09 A C +ATOM 329 CG PHE A 970 4.629 1.769 0.463 1.00 26.16 A C +ATOM 330 CD1 PHE A 970 3.808 1.628 -0.664 1.00 26.05 A C +ATOM 331 CD2 PHE A 970 6.009 1.856 0.286 1.00 26.32 A C +ATOM 332 CE1 PHE A 970 4.364 1.557 -1.939 1.00 24.95 A C +ATOM 333 CE2 PHE A 970 6.577 1.763 -1.002 1.00 28.33 A C +ATOM 334 CZ PHE A 970 5.745 1.613 -2.107 1.00 27.54 A C +ATOM 335 N ALA A 971 2.812 4.398 4.158 1.00 29.22 A N +ATOM 336 CA ALA A 971 1.981 4.693 5.334 1.00 30.95 A C +ATOM 337 C ALA A 971 0.496 4.713 4.985 1.00 32.25 A C +ATOM 338 O ALA A 971 0.099 5.245 3.938 1.00 32.15 A O +ATOM 339 CB ALA A 971 2.394 6.027 5.952 1.00 30.98 A C +ATOM 340 N PHE A 972 -0.302 4.096 5.858 1.00 33.86 A N +ATOM 341 CA PHE A 972 -1.773 4.142 5.799 1.00 34.87 A C +ATOM 342 C PHE A 972 -2.341 4.236 7.217 1.00 35.41 A C +ATOM 343 O PHE A 972 -2.067 3.351 8.036 1.00 35.98 A O +ATOM 344 CB PHE A 972 -2.356 2.909 5.090 1.00 35.34 A C +ATOM 345 CG PHE A 972 -3.854 2.735 5.300 1.00 35.30 A C +ATOM 346 CD1 PHE A 972 -4.354 1.620 5.991 1.00 36.88 A C +ATOM 347 CD2 PHE A 972 -4.757 3.690 4.824 1.00 35.91 A C +ATOM 348 CE1 PHE A 972 -5.755 1.436 6.202 1.00 36.25 A C +ATOM 349 CE2 PHE A 972 -6.152 3.528 5.025 1.00 37.16 A C +ATOM 350 CZ PHE A 972 -6.655 2.390 5.723 1.00 36.52 A C +TER +ATOM 403 N MET B 1 20.321 -9.325 38.937 1.00 15.91 B N +ATOM 404 CA MET B 1 21.299 -9.028 37.853 1.00 16.40 B C +ATOM 405 C MET B 1 20.905 -7.682 37.267 1.00 15.70 B C +ATOM 406 O MET B 1 19.831 -7.153 37.582 1.00 16.27 B O +ATOM 407 CB MET B 1 21.305 -10.119 36.761 1.00 16.69 B C +ATOM 408 CG MET B 1 20.079 -10.100 35.815 1.00 17.98 B C +ATOM 409 SD MET B 1 20.020 -11.386 34.565 1.00 19.50 B S +ATOM 410 CE MET B 1 18.488 -11.049 33.684 1.00 17.01 B C +ATOM 411 N GLN B 2 21.791 -7.106 36.469 1.00 14.74 B N +ATOM 412 CA GLN B 2 21.512 -5.795 35.892 1.00 14.23 B C +ATOM 413 C GLN B 2 21.237 -5.914 34.401 1.00 12.75 B C +ATOM 414 O GLN B 2 21.849 -6.714 33.695 1.00 13.93 B O +ATOM 415 CB GLN B 2 22.687 -4.843 36.133 1.00 14.95 B C +ATOM 416 CG GLN B 2 22.796 -4.411 37.590 1.00 18.19 B C +ATOM 417 CD GLN B 2 23.895 -3.378 37.781 1.00 22.13 B C +ATOM 418 OE1 GLN B 2 24.858 -3.319 36.991 1.00 23.72 B O +ATOM 419 NE2 GLN B 2 23.733 -2.534 38.778 1.00 24.57 B N +ATOM 420 N ILE B 3 20.286 -5.118 33.931 1.00 12.78 B N +ATOM 421 CA ILE B 3 20.130 -4.925 32.491 1.00 11.71 B C +ATOM 422 C ILE B 3 20.059 -3.410 32.263 1.00 11.58 B C +ATOM 423 O ILE B 3 19.826 -2.633 33.208 1.00 11.80 B O +ATOM 424 CB ILE B 3 18.851 -5.654 31.903 1.00 11.23 B C +ATOM 425 CG1 ILE B 3 17.584 -5.070 32.515 1.00 11.17 B C +ATOM 426 CG2 ILE B 3 18.933 -7.205 32.098 1.00 9.27 B C +ATOM 427 CD1 ILE B 3 16.283 -5.463 31.734 1.00 13.21 B C +ATOM 428 N PHE B 4 20.244 -3.008 31.012 1.00 11.67 B N +ATOM 429 CA PHE B 4 20.170 -1.599 30.620 1.00 12.26 B C +ATOM 430 C PHE B 4 19.021 -1.347 29.680 1.00 11.72 B C +ATOM 431 O PHE B 4 18.667 -2.199 28.896 1.00 12.11 B O +ATOM 432 CB PHE B 4 21.488 -1.156 29.947 1.00 11.90 B C +ATOM 433 CG PHE B 4 22.704 -1.530 30.759 1.00 12.69 B C +ATOM 434 CD1 PHE B 4 23.541 -2.564 30.356 1.00 15.11 B C +ATOM 435 CD2 PHE B 4 22.936 -0.902 31.981 1.00 15.48 B C +ATOM 436 CE1 PHE B 4 24.653 -2.943 31.146 1.00 12.97 B C +ATOM 437 CE2 PHE B 4 24.035 -1.287 32.798 1.00 15.06 B C +ATOM 438 CZ PHE B 4 24.870 -2.308 32.372 1.00 12.98 B C +ATOM 439 N VAL B 5 18.476 -0.141 29.757 1.00 12.97 B N +ATOM 440 CA VAL B 5 17.427 0.305 28.835 1.00 12.93 B C +ATOM 441 C VAL B 5 17.846 1.658 28.252 1.00 12.96 B C +ATOM 442 O VAL B 5 18.009 2.625 28.978 1.00 14.02 B O +ATOM 443 CB VAL B 5 16.040 0.423 29.538 1.00 13.18 B C +ATOM 444 CG1 VAL B 5 14.976 0.899 28.508 1.00 13.28 B C +ATOM 445 CG2 VAL B 5 15.622 -0.923 30.172 1.00 12.09 B C +ATOM 446 N LYS B 6 18.068 1.675 26.947 1.00 12.80 B N +ATOM 447 CA LYS B 6 18.452 2.871 26.195 1.00 14.00 B C +ATOM 448 C LYS B 6 17.207 3.571 25.690 1.00 13.97 B C +ATOM 449 O LYS B 6 16.349 2.923 25.088 1.00 12.79 B O +ATOM 450 CB LYS B 6 19.285 2.428 25.005 1.00 13.69 B C +ATOM 451 CG LYS B 6 19.708 3.496 24.002 1.00 20.23 B C +ATOM 452 CD LYS B 6 20.974 2.989 23.329 1.00 29.71 B C +ATOM 453 CE LYS B 6 21.015 3.192 21.783 1.00 31.41 B C +ATOM 454 NZ LYS B 6 21.969 2.227 21.172 1.00 28.51 B N +ATOM 455 N THR B 7 17.114 4.890 25.926 1.00 13.01 B N +ATOM 456 CA THR B 7 15.955 5.683 25.458 1.00 13.24 B C +ATOM 457 C THR B 7 16.374 6.496 24.228 1.00 13.62 B C +ATOM 458 O THR B 7 17.570 6.659 23.974 1.00 13.94 B O +ATOM 459 CB THR B 7 15.444 6.644 26.529 1.00 12.98 B C +ATOM 460 OG1 THR B 7 16.372 7.736 26.633 1.00 14.88 B O +ATOM 461 CG2 THR B 7 15.282 5.922 27.921 1.00 14.12 B C +ATOM 462 N LEU B 8 15.407 7.033 23.483 1.00 13.25 B N +ATOM 463 CA LEU B 8 15.754 7.760 22.274 1.00 15.24 B C +ATOM 464 C LEU B 8 16.339 9.148 22.562 1.00 16.60 B C +ATOM 465 O LEU B 8 16.873 9.799 21.653 1.00 15.75 B O +ATOM 466 CB LEU B 8 14.545 7.870 21.332 1.00 14.86 B C +ATOM 467 CG LEU B 8 14.107 6.528 20.732 1.00 15.58 B C +ATOM 468 CD1 LEU B 8 12.753 6.631 20.075 1.00 17.48 B C +ATOM 469 CD2 LEU B 8 15.161 6.117 19.698 1.00 16.07 B C +ATOM 470 N THR B 9 16.202 9.602 23.805 1.00 18.43 B N +ATOM 471 CA THR B 9 16.784 10.888 24.216 1.00 20.26 B C +ATOM 472 C THR B 9 18.248 10.739 24.626 1.00 21.05 B C +ATOM 473 O THR B 9 18.882 11.714 25.030 1.00 22.09 B O +ATOM 474 CB THR B 9 15.991 11.564 25.345 1.00 20.11 B C +ATOM 475 OG1 THR B 9 16.061 10.777 26.554 1.00 21.14 B O +ATOM 476 CG2 THR B 9 14.558 11.751 24.910 1.00 19.69 B C +ATOM 477 N GLY B 10 18.769 9.527 24.482 1.00 19.19 B N +ATOM 478 CA GLY B 10 20.146 9.197 24.802 1.00 20.20 B C +ATOM 479 C GLY B 10 20.370 8.687 26.216 1.00 19.93 B C +ATOM 480 O GLY B 10 21.514 8.465 26.602 1.00 20.74 B O +ATOM 481 N LYS B 11 19.306 8.554 27.019 1.00 18.89 B N +ATOM 482 CA LYS B 11 19.500 8.068 28.399 1.00 19.18 B C +ATOM 483 C LYS B 11 19.715 6.546 28.457 1.00 18.08 B C +ATOM 484 O LYS B 11 19.099 5.819 27.671 1.00 18.04 B O +ATOM 485 CB LYS B 11 18.351 8.474 29.346 1.00 19.46 B C +ATOM 486 CG LYS B 11 18.521 7.807 30.728 1.00 24.05 B C +ATOM 487 CD LYS B 11 17.949 8.515 31.931 1.00 31.27 B C +ATOM 488 CE LYS B 11 18.931 8.427 33.159 1.00 33.41 B C +ATOM 489 NZ LYS B 11 19.517 7.078 33.510 1.00 33.80 B N +ATOM 490 N THR B 12 20.602 6.091 29.361 1.00 16.97 B N +ATOM 491 CA THR B 12 20.765 4.664 29.717 1.00 16.20 B C +ATOM 492 C THR B 12 20.286 4.452 31.164 1.00 16.98 B C +ATOM 493 O THR B 12 20.892 4.972 32.132 1.00 17.54 B O +ATOM 494 CB THR B 12 22.215 4.180 29.600 1.00 16.18 B C +ATOM 495 OG1 THR B 12 22.655 4.288 28.241 1.00 15.87 B O +ATOM 496 CG2 THR B 12 22.359 2.692 30.042 1.00 17.82 B C +ATOM 497 N ILE B 13 19.191 3.713 31.301 1.00 15.35 B N +ATOM 498 CA ILE B 13 18.602 3.373 32.594 1.00 15.55 B C +ATOM 499 C ILE B 13 19.157 2.005 32.996 1.00 14.70 B C +ATOM 500 O ILE B 13 19.183 1.108 32.173 1.00 13.51 B O +ATOM 501 CB ILE B 13 17.055 3.271 32.470 1.00 15.31 B C +ATOM 502 CG1 ILE B 13 16.469 4.570 31.870 1.00 17.04 B C +ATOM 503 CG2 ILE B 13 16.414 2.926 33.820 1.00 16.42 B C +ATOM 504 CD1 ILE B 13 15.091 4.425 31.274 1.00 19.50 B C +ATOM 505 N THR B 14 19.614 1.861 34.237 1.00 13.93 B N +ATOM 506 CA THR B 14 20.043 0.539 34.723 1.00 14.56 B C +ATOM 507 C THR B 14 18.952 -0.013 35.627 1.00 14.87 B C +ATOM 508 O THR B 14 18.435 0.696 36.510 1.00 15.34 B O +ATOM 509 CB THR B 14 21.367 0.617 35.511 1.00 15.33 B C +ATOM 510 OG1 THR B 14 22.364 1.190 34.676 1.00 14.53 B O +ATOM 511 CG2 THR B 14 21.848 -0.795 35.914 1.00 15.54 B C +ATOM 512 N LEU B 15 18.588 -1.275 35.408 1.00 13.90 B N +ATOM 513 CA LEU B 15 17.535 -1.891 36.207 1.00 14.97 B C +ATOM 514 C LEU B 15 18.125 -3.053 36.960 1.00 14.85 B C +ATOM 515 O LEU B 15 19.019 -3.723 36.445 1.00 14.36 B O +ATOM 516 CB LEU B 15 16.443 -2.420 35.279 1.00 14.12 B C +ATOM 517 CG LEU B 15 15.231 -1.579 34.875 1.00 18.21 B C +ATOM 518 CD1 LEU B 15 15.116 -0.048 35.311 1.00 13.78 B C +ATOM 519 CD2 LEU B 15 14.719 -1.962 33.470 1.00 15.04 B C +ATOM 520 N GLU B 16 17.585 -3.287 38.151 1.00 14.77 B N +ATOM 521 CA GLU B 16 17.862 -4.469 38.966 1.00 16.25 B C +ATOM 522 C GLU B 16 16.737 -5.492 38.754 1.00 16.07 B C +ATOM 523 O GLU B 16 15.584 -5.227 39.081 1.00 17.13 B O +ATOM 524 CB GLU B 16 17.880 -4.025 40.423 1.00 17.13 B C +ATOM 525 CG GLU B 16 18.931 -4.662 41.287 1.00 23.20 B C +ATOM 526 CD GLU B 16 20.347 -4.659 40.685 1.00 23.29 B C +ATOM 527 OE1 GLU B 16 21.108 -3.625 40.657 1.00 25.58 B O +ATOM 528 OE2 GLU B 16 20.690 -5.752 40.256 1.00 24.18 B O +ATOM 529 N VAL B 17 17.066 -6.629 38.169 1.00 15.60 B N +ATOM 530 CA VAL B 17 16.038 -7.594 37.731 1.00 15.51 B C +ATOM 531 C VAL B 17 16.452 -9.035 38.048 1.00 16.38 B C +ATOM 532 O VAL B 17 17.625 -9.301 38.332 1.00 17.00 B O +ATOM 533 CB VAL B 17 15.721 -7.452 36.193 1.00 14.95 B C +ATOM 534 CG1 VAL B 17 15.222 -6.034 35.841 1.00 13.62 B C +ATOM 535 CG2 VAL B 17 16.950 -7.822 35.326 1.00 14.38 B C +ATOM 536 N GLU B 18 15.497 -9.963 37.974 1.00 16.26 B N +ATOM 537 CA GLU B 18 15.820 -11.380 37.980 1.00 17.82 B C +ATOM 538 C GLU B 18 15.400 -11.942 36.640 1.00 17.52 B C +ATOM 539 O GLU B 18 14.523 -11.365 36.004 1.00 16.89 B O +ATOM 540 CB GLU B 18 15.067 -12.101 39.128 1.00 19.08 B C +ATOM 541 CG GLU B 18 15.542 -11.721 40.530 1.00 23.64 B C +ATOM 542 CD GLU B 18 17.028 -11.973 40.789 1.00 28.22 B C +ATOM 543 OE1 GLU B 18 17.675 -12.767 40.078 1.00 34.41 B O +ATOM 544 OE2 GLU B 18 17.567 -11.361 41.717 1.00 32.93 B O +ATOM 545 N PRO B 19 16.000 -13.079 36.205 1.00 17.76 B N +ATOM 546 CA PRO B 19 15.601 -13.705 34.948 1.00 17.64 B C +ATOM 547 C PRO B 19 14.102 -13.986 34.845 1.00 16.53 B C +ATOM 548 O PRO B 19 13.555 -13.923 33.755 1.00 16.64 B O +ATOM 549 CB PRO B 19 16.400 -15.025 34.964 1.00 17.83 B C +ATOM 550 CG PRO B 19 17.640 -14.650 35.706 1.00 20.25 B C +ATOM 551 CD PRO B 19 17.104 -13.833 36.849 1.00 18.14 B C +ATOM 552 N SER B 20 13.447 -14.260 35.975 1.00 16.01 B N +ATOM 553 CA SER B 20 12.006 -14.581 36.005 1.00 16.35 B C +ATOM 554 C SER B 20 11.091 -13.358 35.996 1.00 16.55 B C +ATOM 555 O SER B 20 9.862 -13.504 35.968 1.00 15.67 B O +ATOM 556 CB SER B 20 11.702 -15.445 37.259 1.00 16.18 B C +ATOM 557 OG SER B 20 12.043 -14.709 38.434 1.00 16.54 B O +ATOM 558 N ASP B 21 11.659 -12.144 36.052 1.00 16.21 B N +ATOM 559 CA ASP B 21 10.830 -10.924 36.009 1.00 16.71 B C +ATOM 560 C ASP B 21 10.072 -10.896 34.687 1.00 16.47 B C +ATOM 561 O ASP B 21 10.676 -11.103 33.613 1.00 15.25 B O +ATOM 562 CB ASP B 21 11.670 -9.626 36.155 1.00 16.96 B C +ATOM 563 CG ASP B 21 12.139 -9.360 37.593 1.00 20.97 B C +ATOM 564 OD1 ASP B 21 11.796 -10.126 38.511 1.00 25.48 B O +ATOM 565 OD2 ASP B 21 12.862 -8.372 37.800 1.00 20.86 B O +ATOM 566 N THR B 22 8.771 -10.611 34.767 1.00 16.43 B N +ATOM 567 CA THR B 22 7.955 -10.412 33.564 1.00 16.21 B C +ATOM 568 C THR B 22 8.250 -9.091 32.916 1.00 15.80 B C +ATOM 569 O THR B 22 8.744 -8.196 33.574 1.00 14.79 B O +ATOM 570 CB THR B 22 6.443 -10.454 33.847 1.00 17.05 B C +ATOM 571 OG1 THR B 22 6.044 -9.344 34.666 1.00 17.18 B O +ATOM 572 CG2 THR B 22 6.110 -11.763 34.518 1.00 19.08 B C +ATOM 573 N ILE B 23 7.883 -8.953 31.642 1.00 14.89 B N +ATOM 574 CA ILE B 23 8.051 -7.697 30.942 1.00 15.50 B C +ATOM 575 C ILE B 23 7.244 -6.592 31.655 1.00 15.93 B C +ATOM 576 O ILE B 23 7.703 -5.453 31.758 1.00 15.88 B O +ATOM 577 CB ILE B 23 7.691 -7.825 29.446 1.00 15.10 B C +ATOM 578 CG1 ILE B 23 8.600 -8.868 28.757 1.00 15.06 B C +ATOM 579 CG2 ILE B 23 7.818 -6.463 28.726 1.00 16.29 B C +ATOM 580 CD1 ILE B 23 10.102 -8.661 29.000 1.00 15.53 B C +ATOM 581 N GLU B 24 6.063 -6.930 32.170 1.00 15.42 B N +ATOM 582 CA GLU B 24 5.291 -5.936 32.917 1.00 17.03 B C +ATOM 583 C GLU B 24 6.033 -5.475 34.183 1.00 16.28 B C +ATOM 584 O GLU B 24 6.012 -4.289 34.507 1.00 16.62 B O +ATOM 585 CB GLU B 24 3.891 -6.472 33.265 1.00 17.92 B C +ATOM 586 CG GLU B 24 2.949 -5.431 33.925 1.00 23.25 B C +ATOM 587 CD GLU B 24 2.451 -4.325 32.966 1.00 26.62 B C +ATOM 588 OE1 GLU B 24 2.527 -4.438 31.729 1.00 29.92 B O +ATOM 589 OE2 GLU B 24 1.962 -3.307 33.467 1.00 30.11 B O +ATOM 590 N ASN B 25 6.655 -6.409 34.899 1.00 16.22 B N +ATOM 591 CA ASN B 25 7.526 -6.083 36.031 1.00 16.41 B C +ATOM 592 C ASN B 25 8.602 -5.061 35.587 1.00 15.60 B C +ATOM 593 O ASN B 25 8.905 -4.097 36.306 1.00 15.08 B O +ATOM 594 CB ASN B 25 8.282 -7.327 36.564 1.00 16.96 B C +ATOM 595 CG ASN B 25 7.413 -8.334 37.363 1.00 21.32 B C +ATOM 596 OD1 ASN B 25 7.842 -9.512 37.609 1.00 22.35 B O +ATOM 597 ND2 ASN B 25 6.232 -7.910 37.773 1.00 21.97 B N +ATOM 598 N VAL B 26 9.227 -5.328 34.436 1.00 14.67 B N +ATOM 599 CA VAL B 26 10.305 -4.467 33.933 1.00 14.54 B C +ATOM 600 C VAL B 26 9.775 -3.046 33.646 1.00 15.03 B C +ATOM 601 O VAL B 26 10.411 -2.029 33.993 1.00 14.94 B O +ATOM 602 CB VAL B 26 10.979 -5.095 32.701 1.00 14.22 B C +ATOM 603 CG1 VAL B 26 11.804 -4.071 31.936 1.00 15.08 B C +ATOM 604 CG2 VAL B 26 11.841 -6.296 33.129 1.00 15.55 B C +ATOM 605 N LYS B 27 8.605 -2.991 33.020 1.00 14.54 B N +ATOM 606 CA LYS B 27 7.909 -1.722 32.764 1.00 14.54 B C +ATOM 607 C LYS B 27 7.617 -0.940 34.046 1.00 15.23 B C +ATOM 608 O LYS B 27 7.796 0.282 34.094 1.00 15.55 B O +ATOM 609 CB LYS B 27 6.620 -2.007 31.995 1.00 15.49 B C +ATOM 610 CG LYS B 27 6.895 -2.394 30.518 1.00 14.74 B C +ATOM 611 CD LYS B 27 5.561 -2.647 29.710 1.00 14.76 B C +ATOM 612 CE LYS B 27 5.846 -3.019 28.255 1.00 15.49 B C +ATOM 613 NZ LYS B 27 4.525 -2.903 27.576 1.00 21.95 B N +ATOM 614 N ALA B 28 7.185 -1.660 35.081 1.00 14.94 B N +ATOM 615 CA ALA B 28 6.938 -1.087 36.411 1.00 15.55 B C +ATOM 616 C ALA B 28 8.223 -0.495 37.024 1.00 15.22 B C +ATOM 617 O ALA B 28 8.191 0.585 37.606 1.00 15.26 B O +ATOM 618 CB ALA B 28 6.317 -2.161 37.330 1.00 16.07 B C +ATOM 619 N LYS B 29 9.342 -1.204 36.892 1.00 14.81 B N +ATOM 620 CA LYS B 29 10.652 -0.682 37.334 1.00 14.63 B C +ATOM 621 C LYS B 29 11.085 0.565 36.579 1.00 15.05 B C +ATOM 622 O LYS B 29 11.622 1.500 37.157 1.00 14.93 B O +ATOM 623 CB LYS B 29 11.731 -1.764 37.181 1.00 14.83 B C +ATOM 624 CG LYS B 29 11.565 -2.939 38.133 1.00 15.17 B C +ATOM 625 CD LYS B 29 12.550 -4.041 37.802 1.00 17.16 B C +ATOM 626 CE LYS B 29 12.213 -5.304 38.547 1.00 20.24 B C +ATOM 627 NZ LYS B 29 12.605 -5.104 39.938 1.00 23.73 B N +ATOM 628 N ILE B 30 10.886 0.573 35.270 1.00 15.34 B N +ATOM 629 CA ILE B 30 11.157 1.768 34.476 1.00 15.65 B C +ATOM 630 C ILE B 30 10.274 2.938 34.931 1.00 17.37 B C +ATOM 631 O ILE B 30 10.749 4.083 35.077 1.00 18.37 B O +ATOM 632 CB ILE B 30 10.946 1.490 32.980 1.00 15.67 B C +ATOM 633 CG1 ILE B 30 11.958 0.455 32.485 1.00 15.70 B C +ATOM 634 CG2 ILE B 30 11.060 2.804 32.162 1.00 15.16 B C +ATOM 635 CD1 ILE B 30 11.792 0.123 31.004 1.00 11.25 B C +ATOM 636 N GLN B 31 9.004 2.663 35.178 1.00 18.29 B N +ATOM 637 CA GLN B 31 8.119 3.688 35.755 1.00 20.51 B C +ATOM 638 C GLN B 31 8.627 4.220 37.100 1.00 21.50 B C +ATOM 639 O GLN B 31 8.598 5.417 37.319 1.00 21.57 B O +ATOM 640 CB GLN B 31 6.713 3.131 35.943 1.00 20.55 B C +ATOM 641 CG GLN B 31 5.721 4.104 36.593 1.00 22.20 B C +ATOM 642 CD GLN B 31 4.377 3.475 36.784 1.00 22.00 B C +ATOM 643 OE1 GLN B 31 4.271 2.268 36.997 1.00 26.92 B O +ATOM 644 NE2 GLN B 31 3.329 4.275 36.685 1.00 23.37 B N +ATOM 645 N ASP B 32 9.039 3.329 38.004 1.00 22.74 B N +ATOM 646 CA ASP B 32 9.551 3.744 39.332 1.00 25.02 B C +ATOM 647 C ASP B 32 10.720 4.673 39.203 1.00 26.50 B C +ATOM 648 O ASP B 32 10.798 5.683 39.902 1.00 26.87 B O +ATOM 649 CB ASP B 32 9.944 2.548 40.191 1.00 25.21 B C +ATOM 650 CG ASP B 32 8.746 1.744 40.632 1.00 26.49 B C +ATOM 651 OD1 ASP B 32 8.930 0.636 41.159 1.00 28.74 B O +ATOM 652 OD2 ASP B 32 7.607 2.221 40.446 1.00 28.32 B O +ATOM 653 N LYS B 33 11.632 4.380 38.292 1.00 28.14 B N +ATOM 654 CA LYS B 33 12.768 5.278 38.214 1.00 30.00 B C +ATOM 655 C LYS B 33 12.706 6.460 37.225 1.00 30.34 B C +ATOM 656 O LYS B 33 13.441 7.432 37.409 1.00 30.91 B O +ATOM 657 CB LYS B 33 14.088 4.523 38.217 1.00 30.67 B C +ATOM 658 CG LYS B 33 14.464 3.806 36.989 1.00 31.19 B C +ATOM 659 CD LYS B 33 15.953 3.581 37.087 1.00 32.07 B C +ATOM 660 CE LYS B 33 16.342 2.813 38.335 1.00 31.66 B C +ATOM 661 NZ LYS B 33 17.812 2.883 38.485 1.00 31.25 B N +ATOM 662 N GLU B 34 11.787 6.414 36.262 1.00 30.72 B N +ATOM 663 CA GLU B 34 11.649 7.453 35.240 1.00 31.62 B C +ATOM 664 C GLU B 34 10.294 8.164 35.125 1.00 31.65 B C +ATOM 665 O GLU B 34 10.196 9.194 34.462 1.00 32.00 B O +ATOM 666 CB GLU B 34 12.047 6.886 33.867 1.00 32.17 B C +ATOM 667 CG GLU B 34 13.501 6.419 33.817 1.00 32.97 B C +ATOM 668 CD GLU B 34 14.459 7.569 33.652 1.00 37.21 B C +ATOM 669 OE1 GLU B 34 14.128 8.471 32.841 1.00 38.91 B O +ATOM 670 OE2 GLU B 34 15.519 7.586 34.331 1.00 37.72 B O +ATOM 671 N GLY B 35 9.245 7.618 35.727 1.00 31.32 B N +ATOM 672 CA GLY B 35 7.917 8.229 35.617 1.00 31.36 B C +ATOM 673 C GLY B 35 7.029 7.882 34.430 1.00 31.77 B C +ATOM 674 O GLY B 35 5.921 8.424 34.301 1.00 32.59 B O +ATOM 675 N ILE B 36 7.478 6.972 33.564 1.00 31.04 B N +ATOM 676 CA ILE B 36 6.678 6.585 32.409 1.00 30.20 B C +ATOM 677 C ILE B 36 5.754 5.436 32.767 1.00 29.37 B C +ATOM 678 O ILE B 36 6.252 4.397 33.197 1.00 29.40 B O +ATOM 679 CB ILE B 36 7.576 6.132 31.218 1.00 30.44 B C +ATOM 680 CG1 ILE B 36 8.696 7.150 30.982 1.00 31.04 B C +ATOM 681 CG2 ILE B 36 6.702 5.904 29.954 1.00 29.85 B C +ATOM 682 CD1 ILE B 36 10.019 6.576 30.547 1.00 30.80 B C +ATOM 683 N PRO B 37 4.419 5.603 32.567 1.00 28.29 B N +ATOM 684 CA PRO B 37 3.463 4.528 32.750 1.00 27.75 B C +ATOM 685 C PRO B 37 3.795 3.353 31.832 1.00 26.72 B C +ATOM 686 O PRO B 37 4.243 3.579 30.699 1.00 25.06 B O +ATOM 687 CB PRO B 37 2.131 5.160 32.341 1.00 27.98 B C +ATOM 688 CG PRO B 37 2.349 6.638 32.572 1.00 29.61 B C +ATOM 689 CD PRO B 37 3.748 6.847 32.141 1.00 29.11 B C +ATOM 690 N PRO B 38 3.630 2.112 32.343 1.00 26.76 B N +ATOM 691 CA PRO B 38 3.782 0.895 31.552 1.00 27.16 B C +ATOM 692 C PRO B 38 3.072 0.916 30.191 1.00 28.28 B C +ATOM 693 O PRO B 38 3.617 0.388 29.233 1.00 28.29 B O +ATOM 694 CB PRO B 38 3.233 -0.182 32.477 1.00 27.53 B C +ATOM 695 CG PRO B 38 3.655 0.308 33.833 1.00 27.04 B C +ATOM 696 CD PRO B 38 3.378 1.796 33.767 1.00 26.73 B C +ATOM 697 N ASP B 39 1.892 1.534 30.082 1.00 29.12 B N +ATOM 698 CA ASP B 39 1.203 1.526 28.784 1.00 29.42 B C +ATOM 699 C ASP B 39 1.763 2.486 27.734 1.00 28.73 B C +ATOM 700 O ASP B 39 1.391 2.397 26.552 1.00 30.24 B O +ATOM 701 CB ASP B 39 -0.316 1.689 28.901 1.00 30.44 B C +ATOM 702 CG ASP B 39 -0.711 2.815 29.777 1.00 31.39 B C +ATOM 703 OD1 ASP B 39 -1.710 2.618 30.475 1.00 34.65 B O +ATOM 704 OD2 ASP B 39 -0.037 3.874 29.804 1.00 33.73 B O +ATOM 705 N GLN B 40 2.624 3.407 28.143 1.00 27.04 B N +ATOM 706 CA GLN B 40 3.356 4.207 27.169 1.00 25.59 B C +ATOM 707 C GLN B 40 4.691 3.622 26.712 1.00 22.77 B C +ATOM 708 O GLN B 40 5.397 4.256 25.942 1.00 21.80 B O +ATOM 709 CB GLN B 40 3.539 5.623 27.659 1.00 26.47 B C +ATOM 710 CG GLN B 40 2.194 6.356 27.593 1.00 30.34 B C +ATOM 711 CD GLN B 40 2.044 7.350 28.667 1.00 33.09 B C +ATOM 712 OE1 GLN B 40 0.974 7.437 29.300 1.00 38.76 B O +ATOM 713 NE2 GLN B 40 3.100 8.128 28.908 1.00 34.76 B N +ATOM 714 N GLN B 41 5.010 2.422 27.169 1.00 18.59 B N +ATOM 715 CA GLN B 41 6.344 1.873 26.962 1.00 16.63 B C +ATOM 716 C GLN B 41 6.296 0.780 25.884 1.00 16.44 B C +ATOM 717 O GLN B 41 5.459 -0.128 25.926 1.00 17.03 B O +ATOM 718 CB GLN B 41 6.861 1.288 28.272 1.00 15.78 B C +ATOM 719 CG GLN B 41 7.216 2.349 29.341 1.00 14.03 B C +ATOM 720 CD GLN B 41 7.708 1.710 30.597 1.00 17.41 B C +ATOM 721 OE1 GLN B 41 8.464 0.736 30.554 1.00 14.32 B O +ATOM 722 NE2 GLN B 41 7.260 2.236 31.749 1.00 16.33 B N +ATOM 723 N ARG B 42 7.201 0.852 24.926 1.00 16.11 B N +ATOM 724 CA ARG B 42 7.443 -0.316 24.072 1.00 15.66 B C +ATOM 725 C ARG B 42 8.908 -0.692 24.229 1.00 15.54 B C +ATOM 726 O ARG B 42 9.776 0.192 24.132 1.00 14.66 B O +ATOM 727 CB ARG B 42 7.139 0.019 22.624 1.00 17.32 B C +ATOM 728 CG ARG B 42 5.684 0.346 22.378 1.00 21.67 B C +ATOM 729 CD ARG B 42 4.786 -0.854 22.733 1.00 26.53 B C +ATOM 730 NE ARG B 42 3.425 -0.485 22.379 1.00 33.24 B N +ATOM 731 CZ ARG B 42 2.576 0.130 23.197 1.00 35.30 B C +ATOM 732 NH1 ARG B 42 2.911 0.411 24.452 1.00 36.06 B N +ATOM 733 NH2 ARG B 42 1.381 0.468 22.743 1.00 38.14 B N +ATOM 734 N LEU B 43 9.175 -1.975 24.485 1.00 14.42 B N +ATOM 735 CA LEU B 43 10.552 -2.492 24.637 1.00 13.08 B C +ATOM 736 C LEU B 43 10.942 -3.463 23.511 1.00 14.56 B C +ATOM 737 O LEU B 43 10.197 -4.406 23.174 1.00 15.26 B O +ATOM 738 CB LEU B 43 10.703 -3.138 26.018 1.00 13.28 B C +ATOM 739 CG LEU B 43 10.553 -2.228 27.258 1.00 11.40 B C +ATOM 740 CD1 LEU B 43 10.383 -3.118 28.538 1.00 11.57 B C +ATOM 741 CD2 LEU B 43 11.809 -1.326 27.362 1.00 12.18 B C +ATOM 742 N ILE B 44 12.116 -3.226 22.950 1.00 14.10 B N +ATOM 743 CA ILE B 44 12.657 -3.927 21.798 1.00 15.53 B C +ATOM 744 C ILE B 44 13.939 -4.626 22.266 1.00 14.99 B C +ATOM 745 O ILE B 44 14.827 -3.998 22.850 1.00 14.40 B O +ATOM 746 CB ILE B 44 13.020 -2.926 20.653 1.00 15.41 B C +ATOM 747 CG1 ILE B 44 11.792 -2.097 20.236 1.00 17.78 B C +ATOM 748 CG2 ILE B 44 13.679 -3.612 19.426 1.00 16.49 B C +ATOM 749 CD1 ILE B 44 10.537 -2.943 19.936 1.00 16.67 B C +ATOM 750 N PHE B 45 14.049 -5.907 21.977 1.00 14.59 B N +ATOM 751 CA PHE B 45 15.312 -6.597 22.180 1.00 15.95 B C +ATOM 752 C PHE B 45 15.434 -7.694 21.147 1.00 15.76 B C +ATOM 753 O PHE B 45 14.484 -8.479 20.929 1.00 16.96 B O +ATOM 754 CB PHE B 45 15.438 -7.165 23.609 1.00 16.29 B C +ATOM 755 CG PHE B 45 16.732 -7.938 23.858 1.00 17.30 B C +ATOM 756 CD1 PHE B 45 17.930 -7.265 24.073 1.00 16.45 B C +ATOM 757 CD2 PHE B 45 16.740 -9.343 23.825 1.00 18.21 B C +ATOM 758 CE1 PHE B 45 19.132 -7.972 24.295 1.00 18.52 B C +ATOM 759 CE2 PHE B 45 17.926 -10.054 24.048 1.00 21.91 B C +ATOM 760 CZ PHE B 45 19.125 -9.370 24.266 1.00 19.60 B C +ATOM 761 N ALA B 46 16.586 -7.716 20.494 1.00 16.30 B N +ATOM 762 CA ALA B 46 16.955 -8.778 19.550 1.00 17.28 B C +ATOM 763 C ALA B 46 15.897 -8.954 18.449 1.00 17.99 B C +ATOM 764 O ALA B 46 15.427 -10.078 18.167 1.00 18.58 B O +ATOM 765 CB ALA B 46 17.205 -10.078 20.321 1.00 17.19 B C +ATOM 766 N GLY B 47 15.514 -7.831 17.833 1.00 17.29 B N +ATOM 767 CA GLY B 47 14.511 -7.808 16.754 1.00 17.86 B C +ATOM 768 C GLY B 47 13.097 -8.229 17.153 1.00 17.41 B C +ATOM 769 O GLY B 47 12.301 -8.620 16.297 1.00 18.26 B O +ATOM 770 N LYS B 48 12.793 -8.177 18.445 1.00 17.51 B N +ATOM 771 CA LYS B 48 11.472 -8.524 18.963 1.00 18.45 B C +ATOM 772 C LYS B 48 10.888 -7.429 19.844 1.00 19.17 B C +ATOM 773 O LYS B 48 11.634 -6.705 20.532 1.00 18.35 B O +ATOM 774 CB LYS B 48 11.531 -9.830 19.756 1.00 19.20 B C +ATOM 775 CG LYS B 48 11.712 -11.093 18.899 1.00 20.13 B C +ATOM 776 CD LYS B 48 12.024 -12.281 19.801 1.00 24.25 B C +ATOM 777 CE LYS B 48 13.317 -12.025 20.563 1.00 27.33 B C +ATOM 778 NZ LYS B 48 14.511 -12.343 19.708 1.00 30.69 B N +ATOM 779 N GLN B 49 9.564 -7.284 19.806 1.00 18.99 B N +ATOM 780 CA GLN B 49 8.897 -6.375 20.719 1.00 20.14 B C +ATOM 781 C GLN B 49 8.431 -7.235 21.895 1.00 20.60 B C +ATOM 782 O GLN B 49 7.759 -8.245 21.713 1.00 21.08 B O +ATOM 783 CB GLN B 49 7.737 -5.635 20.039 1.00 20.15 B C +ATOM 784 CG GLN B 49 7.228 -4.434 20.869 1.00 22.50 B C +ATOM 785 CD GLN B 49 6.088 -3.708 20.192 1.00 22.28 B C +ATOM 786 OE1 GLN B 49 5.001 -4.284 19.992 1.00 30.17 B O +ATOM 787 NE2 GLN B 49 6.304 -2.449 19.845 1.00 19.72 B N +ATOM 788 N LEU B 50 8.815 -6.849 23.101 1.00 19.44 B N +ATOM 789 CA LEU B 50 8.647 -7.704 24.277 1.00 19.67 B C +ATOM 790 C LEU B 50 7.212 -7.659 24.809 1.00 20.08 B C +ATOM 791 O LEU B 50 6.690 -6.594 25.055 1.00 19.17 B O +ATOM 792 CB LEU B 50 9.649 -7.300 25.367 1.00 17.99 B C +ATOM 793 CG LEU B 50 11.093 -7.247 24.870 1.00 18.50 B C +ATOM 794 CD1 LEU B 50 12.069 -6.950 26.045 1.00 17.08 B C +ATOM 795 CD2 LEU B 50 11.521 -8.499 24.100 1.00 19.32 B C +ATOM 796 N GLU B 51 6.612 -8.835 25.008 1.00 20.34 B N +ATOM 797 CA GLU B 51 5.221 -8.965 25.481 1.00 21.72 B C +ATOM 798 C GLU B 51 5.084 -9.063 27.004 1.00 22.57 B C +ATOM 799 O GLU B 51 5.860 -9.760 27.658 1.00 22.17 B O +ATOM 800 CB GLU B 51 4.576 -10.210 24.853 1.00 21.60 B C +ATOM 801 CG GLU B 51 4.343 -10.091 23.396 1.00 24.66 B C +ATOM 802 CD GLU B 51 3.899 -11.422 22.782 1.00 30.94 B C +ATOM 803 OE1 GLU B 51 3.330 -12.273 23.522 1.00 30.67 B O +ATOM 804 OE2 GLU B 51 4.147 -11.603 21.574 1.00 33.57 B O +ATOM 805 N ASP B 52 4.046 -8.427 27.551 1.00 23.58 B N +ATOM 806 CA ASP B 52 3.909 -8.196 29.013 1.00 24.76 B C +ATOM 807 C ASP B 52 3.977 -9.415 29.917 1.00 24.35 B C +ATOM 808 O ASP B 52 4.549 -9.329 31.009 1.00 23.01 B O +ATOM 809 CB ASP B 52 2.578 -7.550 29.334 1.00 26.18 B C +ATOM 810 CG ASP B 52 2.565 -6.071 29.097 1.00 28.70 B C +ATOM 811 OD1 ASP B 52 1.466 -5.540 29.270 1.00 33.62 B O +ATOM 812 OD2 ASP B 52 3.599 -5.438 28.745 1.00 32.48 B O +ATOM 813 N GLY B 53 3.332 -10.516 29.508 1.00 23.26 B N +ATOM 814 CA GLY B 53 3.204 -11.677 30.401 1.00 23.37 B C +ATOM 815 C GLY B 53 4.368 -12.642 30.378 1.00 23.32 B C +ATOM 816 O GLY B 53 4.415 -13.588 31.188 1.00 24.92 B O +ATOM 817 N ARG B 54 5.309 -12.414 29.459 1.00 21.54 B N +ATOM 818 CA ARG B 54 6.501 -13.259 29.294 1.00 19.86 B C +ATOM 819 C ARG B 54 7.608 -12.678 30.153 1.00 19.28 B C +ATOM 820 O ARG B 54 7.490 -11.541 30.628 1.00 19.24 B O +ATOM 821 CB ARG B 54 6.943 -13.275 27.831 1.00 20.00 B C +ATOM 822 CG ARG B 54 5.771 -13.569 26.903 1.00 23.44 B C +ATOM 823 CD ARG B 54 6.116 -14.363 25.709 1.00 24.41 B C +ATOM 824 NE ARG B 54 4.941 -14.451 24.839 1.00 28.73 B N +ATOM 825 CZ ARG B 54 4.102 -15.480 24.788 1.00 29.09 B C +ATOM 826 NH1 ARG B 54 3.070 -15.436 23.949 1.00 29.99 B N +ATOM 827 NH2 ARG B 54 4.283 -16.551 25.561 1.00 29.67 B N +ATOM 828 N THR B 55 8.657 -13.450 30.369 1.00 17.51 B N +ATOM 829 CA THR B 55 9.722 -13.024 31.270 1.00 16.43 B C +ATOM 830 C THR B 55 10.960 -12.647 30.477 1.00 15.25 B C +ATOM 831 O THR B 55 11.051 -12.931 29.282 1.00 15.23 B O +ATOM 832 CB THR B 55 10.101 -14.118 32.226 1.00 15.82 B C +ATOM 833 OG1 THR B 55 10.629 -15.210 31.461 1.00 17.34 B O +ATOM 834 CG2 THR B 55 8.832 -14.591 33.020 1.00 18.65 B C +ATOM 835 N LEU B 56 11.920 -12.012 31.146 1.00 14.38 B N +ATOM 836 CA LEU B 56 13.206 -11.703 30.486 1.00 13.29 B C +ATOM 837 C LEU B 56 13.842 -12.960 29.914 1.00 13.81 B C +ATOM 838 O LEU B 56 14.292 -12.961 28.762 1.00 13.68 B O +ATOM 839 CB LEU B 56 14.146 -11.035 31.477 1.00 12.80 B C +ATOM 840 CG LEU B 56 13.695 -9.650 31.940 1.00 14.86 B C +ATOM 841 CD1 LEU B 56 14.649 -9.263 33.090 1.00 13.74 B C +ATOM 842 CD2 LEU B 56 13.817 -8.641 30.797 1.00 14.17 B C +ATOM 843 N SER B 57 13.838 -14.043 30.709 1.00 13.54 B N +ATOM 844 CA SER B 57 14.412 -15.299 30.300 1.00 15.80 B C +ATOM 845 C SER B 57 13.737 -15.922 29.076 1.00 15.57 B C +ATOM 846 O SER B 57 14.411 -16.543 28.275 1.00 16.68 B O +ATOM 847 CB SER B 57 14.465 -16.280 31.481 1.00 16.71 B C +ATOM 848 OG SER B 57 15.429 -15.800 32.423 1.00 21.58 B O +ATOM 849 N ASP B 58 12.435 -15.713 28.912 1.00 14.80 B N +ATOM 850 CA ASP B 58 11.730 -16.232 27.721 1.00 15.95 B C +ATOM 851 C ASP B 58 12.318 -15.650 26.427 1.00 16.24 B C +ATOM 852 O ASP B 58 12.256 -16.276 25.365 1.00 15.94 B O +ATOM 853 CB ASP B 58 10.253 -15.909 27.796 1.00 14.27 B C +ATOM 854 CG ASP B 58 9.511 -16.729 28.865 1.00 16.32 B C +ATOM 855 OD1 ASP B 58 8.463 -16.253 29.282 1.00 17.61 B O +ATOM 856 OD2 ASP B 58 9.965 -17.807 29.300 1.00 16.01 B O +ATOM 857 N TYR B 59 12.901 -14.454 26.541 1.00 16.79 B N +ATOM 858 CA TYR B 59 13.594 -13.794 25.419 1.00 17.79 B C +ATOM 859 C TYR B 59 15.113 -13.944 25.443 1.00 18.93 B C +ATOM 860 O TYR B 59 15.811 -13.218 24.715 1.00 20.93 B O +ATOM 861 CB TYR B 59 13.237 -12.316 25.417 1.00 17.79 B C +ATOM 862 CG TYR B 59 11.780 -12.078 25.121 1.00 16.31 B C +ATOM 863 CD1 TYR B 59 10.899 -11.678 26.108 1.00 17.56 B C +ATOM 864 CD2 TYR B 59 11.294 -12.240 23.835 1.00 16.66 B C +ATOM 865 CE1 TYR B 59 9.551 -11.461 25.821 1.00 16.84 B C +ATOM 866 CE2 TYR B 59 9.925 -12.056 23.534 1.00 16.51 B C +ATOM 867 CZ TYR B 59 9.075 -11.659 24.540 1.00 17.97 B C +ATOM 868 OH TYR B 59 7.755 -11.434 24.231 1.00 18.36 B O +ATOM 869 N ASN B 60 15.628 -14.868 26.250 1.00 18.82 B N +ATOM 870 CA ASN B 60 17.072 -15.090 26.398 1.00 19.89 B C +ATOM 871 C ASN B 60 17.818 -13.767 26.714 1.00 19.88 B C +ATOM 872 O ASN B 60 18.980 -13.540 26.302 1.00 21.50 B O +ATOM 873 CB ASN B 60 17.637 -15.829 25.175 1.00 20.49 B C +ATOM 874 CG ASN B 60 18.622 -16.932 25.548 1.00 25.38 B C +ATOM 875 OD1 ASN B 60 19.299 -17.489 24.680 1.00 30.47 B O +ATOM 876 ND2 ASN B 60 18.740 -17.229 26.845 1.00 27.83 B N +ATOM 877 N ILE B 61 17.130 -12.880 27.428 1.00 18.78 B N +ATOM 878 CA ILE B 61 17.738 -11.650 27.962 1.00 17.96 B C +ATOM 879 C ILE B 61 18.584 -12.006 29.198 1.00 18.30 B C +ATOM 880 O ILE B 61 18.084 -12.504 30.202 1.00 17.90 B O +ATOM 881 CB ILE B 61 16.674 -10.605 28.274 1.00 17.14 B C +ATOM 882 CG1 ILE B 61 15.984 -10.131 26.990 1.00 18.25 B C +ATOM 883 CG2 ILE B 61 17.239 -9.383 29.018 1.00 16.21 B C +ATOM 884 CD1 ILE B 61 14.724 -9.337 27.289 1.00 16.05 B C +ATOM 885 N GLN B 62 19.889 -11.782 29.095 1.00 19.14 B N +ATOM 886 CA GLN B 62 20.822 -12.162 30.141 1.00 19.96 B C +ATOM 887 C GLN B 62 21.397 -10.917 30.822 1.00 17.75 B C +ATOM 888 O GLN B 62 21.132 -9.801 30.382 1.00 17.73 B O +ATOM 889 CB GLN B 62 21.921 -13.074 29.546 1.00 19.98 B C +ATOM 890 CG GLN B 62 21.415 -14.518 29.228 1.00 24.03 B C +ATOM 891 CD GLN B 62 22.538 -15.566 29.017 1.00 25.39 B C +ATOM 892 OE1 GLN B 62 22.495 -16.337 28.058 1.00 34.54 B O +ATOM 893 NE2 GLN B 62 23.506 -15.627 29.939 1.00 32.07 B N +ATOM 894 N LYS B 63 22.202 -11.103 31.873 1.00 15.63 B N +ATOM 895 CA LYS B 63 22.872 -9.981 32.531 1.00 15.57 B C +ATOM 896 C LYS B 63 23.594 -9.072 31.533 1.00 13.49 B C +ATOM 897 O LYS B 63 24.193 -9.525 30.526 1.00 13.46 B O +ATOM 898 CB LYS B 63 23.856 -10.449 33.602 1.00 16.14 B C +ATOM 899 CG LYS B 63 25.126 -11.111 33.028 1.00 16.50 B C +ATOM 900 CD LYS B 63 26.123 -11.408 34.201 1.00 20.85 B C +ATOM 901 CE LYS B 63 27.437 -11.965 33.676 1.00 26.59 B C +ATOM 902 NZ LYS B 63 28.268 -10.887 33.080 1.00 32.10 B N +ATOM 903 N GLU B 64 23.483 -7.785 31.793 1.00 13.35 B N +ATOM 904 CA GLU B 64 24.086 -6.751 30.926 1.00 15.82 B C +ATOM 905 C GLU B 64 23.525 -6.589 29.497 1.00 14.60 B C +ATOM 906 O GLU B 64 24.065 -5.838 28.682 1.00 14.49 B O +ATOM 907 CB GLU B 64 25.632 -6.827 30.970 1.00 15.96 B C +ATOM 908 CG GLU B 64 26.133 -6.340 32.312 1.00 19.60 B C +ATOM 909 CD GLU B 64 26.598 -7.418 33.281 1.00 28.16 B C +ATOM 910 OE1 GLU B 64 27.508 -8.195 32.867 1.00 28.71 B O +ATOM 911 OE2 GLU B 64 26.137 -7.406 34.481 1.00 27.69 B O +ATOM 912 N SER B 65 22.390 -7.223 29.214 1.00 14.40 B N +ATOM 913 CA SER B 65 21.688 -6.990 27.960 1.00 14.09 B C +ATOM 914 C SER B 65 21.168 -5.562 27.917 1.00 13.97 B C +ATOM 915 O SER B 65 20.849 -4.984 28.955 1.00 14.11 B O +ATOM 916 CB SER B 65 20.480 -7.923 27.843 1.00 13.03 B C +ATOM 917 OG SER B 65 20.911 -9.254 27.634 1.00 15.27 B O +ATOM 918 N THR B 66 21.066 -5.002 26.715 1.00 14.26 B N +ATOM 919 CA THR B 66 20.548 -3.634 26.540 1.00 14.61 B C +ATOM 920 C THR B 66 19.236 -3.721 25.763 1.00 13.88 B C +ATOM 921 O THR B 66 19.211 -4.200 24.632 1.00 15.09 B O +ATOM 922 CB THR B 66 21.550 -2.676 25.819 1.00 15.34 B C +ATOM 923 OG1 THR B 66 22.745 -2.555 26.597 1.00 15.29 B O +ATOM 924 CG2 THR B 66 20.947 -1.238 25.671 1.00 14.64 B C +ATOM 925 N LEU B 67 18.163 -3.269 26.383 1.00 14.02 B N +ATOM 926 CA LEU B 67 16.864 -3.139 25.718 1.00 14.21 B C +ATOM 927 C LEU B 67 16.722 -1.717 25.176 1.00 14.16 B C +ATOM 928 O LEU B 67 17.380 -0.791 25.698 1.00 14.09 B O +ATOM 929 CB LEU B 67 15.728 -3.374 26.712 1.00 13.85 B C +ATOM 930 CG LEU B 67 15.727 -4.527 27.743 1.00 17.53 B C +ATOM 931 CD1 LEU B 67 14.289 -4.759 28.356 1.00 13.56 B C +ATOM 932 CD2 LEU B 67 16.334 -5.800 27.270 1.00 15.62 B C +ATOM 933 N HIS B 68 15.883 -1.548 24.142 1.00 12.94 B N +ATOM 934 CA HIS B 68 15.591 -0.219 23.631 1.00 13.32 B C +ATOM 935 C HIS B 68 14.121 0.156 23.896 1.00 13.58 B C +ATOM 936 O HIS B 68 13.189 -0.586 23.550 1.00 13.76 B O +ATOM 937 CB HIS B 68 15.952 -0.066 22.151 1.00 13.62 B C +ATOM 938 CG HIS B 68 17.430 -0.145 21.896 1.00 15.18 B C +ATOM 939 ND1 HIS B 68 18.210 0.955 21.584 1.00 19.72 B N +ATOM 940 CD2 HIS B 68 18.273 -1.189 21.974 1.00 15.21 B C +ATOM 941 CE1 HIS B 68 19.465 0.573 21.436 1.00 14.46 B C +ATOM 942 NE2 HIS B 68 19.535 -0.720 21.686 1.00 19.23 B N +ATOM 943 N LEU B 69 13.945 1.313 24.531 1.00 13.37 B N +ATOM 944 CA LEU B 69 12.615 1.811 24.876 1.00 12.49 B C +ATOM 945 C LEU B 69 12.121 2.840 23.873 1.00 14.09 B C +ATOM 946 O LEU B 69 12.850 3.741 23.481 1.00 13.91 B O +ATOM 947 CB LEU B 69 12.664 2.463 26.250 1.00 13.05 B C +ATOM 948 CG LEU B 69 11.387 3.199 26.721 1.00 13.35 B C +ATOM 949 CD1 LEU B 69 10.205 2.249 26.900 1.00 13.45 B C +ATOM 950 CD2 LEU B 69 11.687 3.974 28.021 1.00 12.71 B C +ATOM 951 N VAL B 70 10.865 2.702 23.461 1.00 15.24 B N +ATOM 952 CA VAL B 70 10.202 3.725 22.644 1.00 16.94 B C +ATOM 953 C VAL B 70 8.907 4.084 23.338 1.00 18.01 B C +ATOM 954 O VAL B 70 8.175 3.205 23.805 1.00 17.45 B O +ATOM 955 CB VAL B 70 9.826 3.219 21.235 1.00 17.09 B C +ATOM 956 CG1 VAL B 70 9.240 4.348 20.378 1.00 18.23 B C +ATOM 957 CG2 VAL B 70 11.035 2.657 20.512 1.00 17.63 B C +ATOM 958 N LEU B 71 8.604 5.371 23.374 1.00 19.59 B N +ATOM 959 CA LEU B 71 7.394 5.810 24.027 1.00 22.46 B C +ATOM 960 C LEU B 71 6.250 5.806 23.006 1.00 24.37 B C +ATOM 961 O LEU B 71 6.475 5.911 21.776 1.00 23.74 B O +ATOM 962 CB LEU B 71 7.620 7.181 24.664 1.00 23.30 B C +ATOM 963 CG LEU B 71 8.157 7.264 26.105 1.00 24.51 B C +ATOM 964 CD1 LEU B 71 8.656 5.938 26.700 1.00 23.98 B C +ATOM 965 CD2 LEU B 71 9.199 8.358 26.203 1.00 28.65 B C +ATOM 966 N ARG B 72 5.034 5.575 23.479 1.00 25.38 B N +ATOM 967 CA ARG B 72 3.918 5.633 22.555 1.00 28.72 B C +ATOM 968 C ARG B 72 3.404 7.079 22.524 1.00 28.98 B C +ATOM 969 O ARG B 72 2.548 7.492 23.343 1.00 30.87 B O +ATOM 970 CB ARG B 72 2.818 4.673 22.954 1.00 29.48 B C +ATOM 971 CG ARG B 72 2.038 4.176 21.766 1.00 35.17 B C +ATOM 972 CD ARG B 72 0.501 4.250 21.994 1.00 41.46 B C +ATOM 973 NE ARG B 72 -0.221 3.505 20.963 1.00 44.48 B N +ATOM 974 CZ ARG B 72 -1.501 3.137 21.035 1.00 46.24 B C +ATOM 975 NH1 ARG B 72 -2.031 2.454 20.031 1.00 45.28 B N +ATOM 976 NH2 ARG B 72 -2.249 3.447 22.095 1.00 45.90 B N +TER