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Releases: icbi-lab/infercnvpy

v0.5.0

26 Jun 12:14
558b2f6
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What's Changed

  • Take into account that chromosomes may be removed when specifying manual reference by @grst in #135
  • Feat: Feature gene annotation by @grantn5 in #132

New Contributors

Full Changelog: v0.4.5...v0.5.0

v0.4.5

19 Feb 19:57
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What's Changed

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Full Changelog: v0.4.4...v0.4.5

v0.4.4

28 Dec 21:05
527284c
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What's Changed

  • template update icbi lab infercnvpy v0.3.0 by @grst in #119
  • Update gtfparse version requirement by @jpintar in #118

Full Changelog: v0.4.3...v0.4.4

v0.4.3

26 Sep 06:50
8f58151
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What's Changed

  • Fix codecov CI and update template by @grst in #85
  • added mouse functinality for copyKAT by @abyssum in #92
  • scverse cookiecutter template update v0.2.22 by @grst in #111
  • Fix heatmap passing of uns data to scanpy.pl.heatmap by @jpintar in #110
  • Fix support for vmax/vmin parameters for heatmaps by @grst in #113
  • Pin gtfparse < 2 by @grst in #112

New Contributors

Full Changelog: v0.4.2...v0.4.3

v0.4.2

29 Mar 07:33
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Fixes

  • allow heatmap to use user's dendrogram by @mmfalco in #72

Chore

  • Automated template update from cookiecutter-scverse by @github-actions in #67
  • [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in #68

New Contributors

Full Changelog: v0.4.1...v0.4.2

v0.4.1

09 Jan 16:19
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Fixes

  • Fix incompatibility with gtfparse>=2 by @grst in #66

v0.4.0

20 Oct 06:09
bab74f1
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Fixes

Other changes

  • Switch to cookiecutter-scverse template by @grst in #42. This implies
    • change of the build system to hatch
    • move documentation from github pages to readthedocs.

v0.3.0

28 Apr 08:41
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Additions

  • It is now possible to read and process results of SCEVAN (#32)
  • ITHCNA and ITHGEX metrics (#30 by @elisapanizzolo and @grst)
  • The copyKAT wrapper now takes the norm_cell_names parameter and returns tumor/normal predictions (#25 by @jingxinfu)

Fixes

  • Don't hardcode copykat column names in results data frame (#24 by @abyssum)

v0.2.0

13 Sep 12:32
b86c812
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Additions

  • Add wrapper for copyKAT (#21 by @abyssum)
  • Update CI to test R-based functions (#21)

Fixes

  • Fix use_rep parameter in pl.chromosome_heatmap (#20).

v0.1.2

06 Sep 14:21
7ee25b0
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Fixes

  • Plotting a chromosome_heatmap_summary now works even if the matrix in obsm is in dense format.