From 45cd6b0fe5baf0ae64d07faeda17fadd087649da Mon Sep 17 00:00:00 2001
From: edsu7 <22638361+edsu7@users.noreply.github.com>
Date: Fri, 12 Aug 2022 10:06:30 -0400
Subject: [PATCH] add in missing output for downstream

---
 download-pyega3/main.nf | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/download-pyega3/main.nf b/download-pyega3/main.nf
index b0860e6..8fefe16 100755
--- a/download-pyega3/main.nf
+++ b/download-pyega3/main.nf
@@ -63,7 +63,7 @@ process downloadPyega3 {
 
   output:  // output, make update as needed
     path "${ega_id}/*.md5", emit: md5_file
-    path "${ega_id}/*.{bam,cram,fastq.gz,fq.gz,fastq.bz2,fq.bz2,txt.gz,txt.bz2,vcf,bcf}"
+    path "${ega_id}/*.{bam,cram,fastq.gz,fq.gz,fastq.bz2,fq.bz2,txt.gz,txt.bz2,vcf,bcf}", emit : output_files
   script:
 
     """