adding copy cmd to main.nf

icgc-argo · Aug 16, 2022 · 5dced1e · 5dced1e
1 parent 8a7563e
commit 5dced1e
Showing 1 changed file with 2 additions and 1 deletion.
diff --git a/validate-seqtools/main.nf b/validate-seqtools/main.nf
@@ -67,8 +67,9 @@ process validateSeqtools {
     // add and initialize variables here as needed
     args_skip_md5sum_check = params.skip_md5sum_check  ? "--skip_md5sum_check " : ""
     """
+    cp ${json_file} local_copy
     python3 /tools/main.py \
-      -j ${json_file} \
+      -j local_copy \
       ${args_skip_md5sum_check} \
       > seq-tools.log 2>&1
     """