diff --git a/validate-seqtools/main.nf b/validate-seqtools/main.nf index 6c81693..42dcb69 100755 --- a/validate-seqtools/main.nf +++ b/validate-seqtools/main.nf @@ -67,8 +67,9 @@ process validateSeqtools { // add and initialize variables here as needed args_skip_md5sum_check = params.skip_md5sum_check ? "--skip_md5sum_check " : "" """ + cp ${json_file} local_copy python3 /tools/main.py \ - -j ${json_file} \ + -j local_copy \ ${args_skip_md5sum_check} \ > seq-tools.log 2>&1 """