add in failing condition

icgc-argo · Aug 17, 2022 · e4156c1 · e4156c1
1 parent 5dced1e
commit e4156c1
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diff --git a/validate-seqtools/main.nf b/validate-seqtools/main.nf
@@ -72,6 +72,8 @@ process validateSeqtools {
       -j local_copy \
       ${args_skip_md5sum_check} \
       > seq-tools.log 2>&1
+    rm local_copy
+    ls validation_report.PASS*.jsonl && ( exit 0 || exit 1)
     """
 }
 

diff --git a/validate-seqtools/tests/test-job-fq.json → ...ate-seqtools/tests/local-test-job-fq.json b/validate-seqtools/tests/test-job-fq.json → ...ate-seqtools/tests/local-test-job-fq.json