From e4156c1edcc1bda232a4df959f6e5a39b416d154 Mon Sep 17 00:00:00 2001
From: edsu7 <22638361+edsu7@users.noreply.github.com>
Date: Wed, 17 Aug 2022 08:18:32 -0400
Subject: [PATCH] add in failing condition

---
 validate-seqtools/main.nf                                       | 2 ++
 .../tests/{test-job-fq.json => local-test-job-fq.json}          | 0
 2 files changed, 2 insertions(+)
 rename validate-seqtools/tests/{test-job-fq.json => local-test-job-fq.json} (100%)

diff --git a/validate-seqtools/main.nf b/validate-seqtools/main.nf
index 42dcb69..b4dccd0 100755
--- a/validate-seqtools/main.nf
+++ b/validate-seqtools/main.nf
@@ -72,6 +72,8 @@ process validateSeqtools {
       -j local_copy \
       ${args_skip_md5sum_check} \
       > seq-tools.log 2>&1
+    rm local_copy
+    ls validation_report.PASS*.jsonl && ( exit 0 || exit 1)
     """
 }
 
diff --git a/validate-seqtools/tests/test-job-fq.json b/validate-seqtools/tests/local-test-job-fq.json
similarity index 100%
rename from validate-seqtools/tests/test-job-fq.json
rename to validate-seqtools/tests/local-test-job-fq.json