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Merge pull request #439 from icgc-argo/develop
Data Dictionary v1.24
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,125 @@ | ||
| /* | ||
| * Copyright (c) 2024 The Ontario Institute for Cancer Research. All rights reserved | ||
| * | ||
| * This program and the accompanying materials are made available under the terms of the GNU Affero General Public License v3.0. | ||
| * You should have received a copy of the GNU Affero General Public License along with | ||
| * this program. If not, see <http://www.gnu.org/licenses/>. | ||
| * | ||
| * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND ANY | ||
| * EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES | ||
| * OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT | ||
| * SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, | ||
| * INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED | ||
| * TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; | ||
| * OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER | ||
| * IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN | ||
| * ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. | ||
| * | ||
| * | ||
| */ | ||
|
|
||
| /** | ||
| * Requirement to submit either drug_rxnormcui, drug_name or drug_database, drug_id, drug_term. | ||
| */ | ||
|
|
||
| const validation = () => | ||
| (function validate(inputs) { | ||
| const {$row, $name, $field} = inputs; | ||
| let result = {valid: true, message: "Ok"}; | ||
|
|
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| // Extract related fields from the row | ||
| const drug_rxnormcui = $row.drug_rxnormcui; | ||
| const drug_name = $row.drug_name; | ||
| const drug_database = $row.drug_database; | ||
| const drug_id = $row.drug_id; | ||
| const drug_term = $row.drug_term; | ||
|
|
||
| // checks for empty fields | ||
| const checkforEmpty = (entry) => { | ||
| // Check if entry is null or undefined | ||
| if (entry === null || entry === undefined) { | ||
| return true; | ||
| } | ||
| // Logic to check if the entry is an empty string or contains only whitespace | ||
| return /^\s*$/.test(decodeURI(entry).replace(/^"(.*)"$/, '$1')); | ||
| }; | ||
|
|
||
| // Validate based on the field name | ||
| switch ($name) { | ||
| case 'drug_rxnormcui': | ||
| // If drug_rxnormcui is provided | ||
| if (!checkforEmpty($field)) { | ||
| if (checkforEmpty(drug_name)) { | ||
| result = { | ||
| valid: false, | ||
| message: `drug_name is required when drug_rxnormcui is provided.` | ||
| }; | ||
| } | ||
| if (!checkforEmpty(drug_database) || !checkforEmpty(drug_id) || !checkforEmpty(drug_term) ) { | ||
| result = { | ||
| valid: false, | ||
| message: `drug_database, drug_id and drug_term should be blank when drug_rxnormcui is provided.` | ||
| }; | ||
| } | ||
| } else { | ||
| // If drug_rxnormcui is not provided | ||
| if (!checkforEmpty(drug_name)) { | ||
| result = { | ||
| valid: false, | ||
| message: `drug_name should not be populated when drug_rxnormcui is not provided.` | ||
| }; | ||
| } | ||
| if (checkforEmpty(drug_database) || checkforEmpty(drug_id) || checkforEmpty(drug_term) ) { | ||
| result = { | ||
| valid: false, | ||
| message: `drug_database, drug_id and drug_term must be populated when drug_rxnormcui is not provided.` | ||
| }; | ||
| } | ||
| } | ||
| break; | ||
|
|
||
| case 'drug_name': | ||
| // If drug_rxnormcui is provided, drug_name must be populated | ||
| if (!checkforEmpty(drug_rxnormcui) && checkforEmpty($field)) { | ||
| result = { | ||
| valid: false, | ||
| message: `drug_name is required when drug_rxnormcui is provided.` | ||
| }; | ||
| } | ||
| // If drug_rxnormcui is not provided, drug_name should be empty | ||
| if (checkforEmpty(drug_rxnormcui) && !checkforEmpty($field)) { | ||
| result = { | ||
| valid: false, | ||
| message: `drug_name should not be populated when drug_rxnormcui is not provided.` | ||
| }; | ||
| } | ||
| break; | ||
|
|
||
| case 'drug_database': | ||
| case 'drug_id': | ||
| case 'drug_term': | ||
| // If drug_rxnormcui is provided, these fields should be empty | ||
| if (!checkforEmpty(drug_rxnormcui) && !checkforEmpty($field)) { | ||
| result = { | ||
| valid: false, | ||
| message: `'${$name}' should be blank when drug_rxnormcui is provided.` | ||
| }; | ||
| } | ||
| // If drug_rxnormcui is not provided, these fields must be populated | ||
| if (checkforEmpty(drug_rxnormcui) && checkforEmpty($field)) { | ||
| result = { | ||
| valid: false, | ||
| message: `'${$name}' must be populated when drug_rxnormcui is not provided.` | ||
| }; | ||
| } | ||
| break; | ||
|
|
||
| default: | ||
| break; | ||
| } | ||
|
|
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| return result; | ||
| }); | ||
|
|
||
|
|
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| module.exports = validation; |
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