V2.0 (#198)

Main new modules introduced by v2.0

- Self-gravity (!186)
- Multi-dust species as pressureless fluids (!336)
- Passive tracers (!341)
- Planet module (planet migration, planet-planet integration) (!278)
- Custom equation of states (#185)

See Changelog.md for details

---------

Co-authored-by: Geoffroy Lesur <>
Co-authored-by: Clément Robert <cr52@protonmail.com>
Co-authored-by: Marc Van den Bossche <marc.vanden-bossche@univ-grenoble-alpes.fr>
Co-authored-by: Clément Robert <cmt.robert@univ-grenoble-alpes.fr>
Co-authored-by: Volodia99 <gaylor.wafflard@univ-grenoble-alpes.fr>
Co-authored-by: pre-commit-ci-lite[bot] <117423508+pre-commit-ci-lite[bot]@users.noreply.github.com>
Co-authored-by: Alankar Dutta <dutta.alankar@gmail.com>
Co-authored-by: jeankpf <74673691+jeankpf@users.noreply.github.com>

.github/workflows/idefix-ci.yml

@@ -4,6 +4,7 @@ on:
   push:
     branches:
       - master
+      - v2.0
   pull_request:
     paths-ignore:
       - '.github/ISSUE_TEMPLATE/*'
@@ -16,132 +17,271 @@ concurrency:
   cancel-in-progress: true
 
 env:
-  TEST_OPTIONS: -DKokkos_ENABLE_CUDA=ON
+  TESTME_OPTIONS: -cuda -Werror
+  PYTHONPATH: ${{ github.workspace }}
+  IDEFIX_DIR: ${{ github.workspace }}
 
 jobs:
   Linter:
     # Don't do this in forks
-    if: github.repository == 'idefix-code/idefix'
+    if: ${{ github.repository == 'idefix-code/idefix' || github.repository == 'glesur/idefix' }}
     runs-on: ubuntu-latest
     steps:
       - uses: actions/checkout@v3
-        with:
-          lfs: false
       - uses: actions/setup-python@v4
         with:
           python-version: 3.x
       - uses: pre-commit/action@v3.0.0
       - uses: pre-commit-ci/lite-action@v1.0.0
         if: always()
 
-  Hydrodynamics:
+  ShocksHydro:
+    needs: Linter
+    runs-on: self-hosted
+    steps:
+      - name: Check out repo
+        uses: actions/checkout@v3
+        with:
+          submodules: recursive
+      - name: Sod test
+        run: |
+          cd $IDEFIX_DIR/test/HD/sod
+          ./testme.py -all $TESTME_OPTIONS
+      - name: Isothermal Sod test
+        run: |
+          cd $IDEFIX_DIR/test/HD/sod-iso
+          ./testme.py -all $TESTME_OPTIONS
+      - name: Mach reflection test
+        run: |
+          cd $IDEFIX_DIR/test/HD//MachReflection
+          ./testme.py -all $TESTME_OPTIONS
+
+  ParabolicHydro:
     needs: Linter
     runs-on: self-hosted
     steps:
       - name: Check out repo
         uses: actions/checkout@v3
         with:
-          lfs: true
           submodules: recursive
-      # Manually do a git LFS https://github.com/actions/checkout/issues/270
-      - run: git lfs pull
-      - name: Run Hydro test
-        run: cd test && ./checks_hydro.sh $TEST_OPTIONS
+      - name: Viscous flow past cylinder
+        run: |
+          cd $IDEFIX_DIR/test/HD/ViscousFlowPastCylinder
+          ./testme.py -all $TESTME_OPTIONS
+      - name: Viscous disk
+        run: |
+          cd $IDEFIX_DIR/test/HD/ViscousDisk
+          ./testme.py -all $TESTME_OPTIONS
+      - name: Thermal diffusion
+        run: |
+          cd $IDEFIX_DIR/test/HD/thermalDiffusion
+          ./testme.py -all $TESTME_OPTIONS
 
-  Magneto-Hydrodynamics:
+  ShocksMHD:
     needs: Linter
     runs-on: self-hosted
     steps:
       - name: Check out repo
         uses: actions/checkout@v3
         with:
-          lfs: true
           submodules: recursive
-      # Manually do a git LFS https://github.com/actions/checkout/issues/270
-      - run: git lfs pull
-      - name: Run MHD test
-        run: cd test && ./checks_mhd.sh $TEST_OPTIONS
+      - name: MHD Sod test
+        run: |
+          cd $IDEFIX_DIR/test/MHD/sod
+          ./testme.py -all $TESTME_OPTIONS
+      - name: MHD Isothermal Sod test
+        run: |
+          cd $IDEFIX_DIR/test/MHD/sod-iso
+          ./testme.py -all $TESTME_OPTIONS
+      - name: Orszag Tang
+        run: |
+          cd $IDEFIX_DIR/test/MHD/OrszagTang
+          ./testme.py -all $TESTME_OPTIONS
+      - name: Orszag Tang 3D+restart tests
+        run: |
+          cd $IDEFIX_DIR/test/MHD/OrszagTang3D
+          ./testme.py -all $TESTME_OPTIONS
+
 
-  MPI:
+  ParabolicMHD:
     needs: Linter
     runs-on: self-hosted
     steps:
       - name: Check out repo
         uses: actions/checkout@v3
         with:
-          lfs: true
           submodules: recursive
-      # Manually do a git LFS https://github.com/actions/checkout/issues/270
-      - run: git lfs pull
-      - name: Run MPI test
-        run: cd test && ./checks_mpi.sh $TEST_OPTIONS
+      - name: Ambipolar C Shock
+        run: |
+          cd $IDEFIX_DIR/test/MHD/AmbipolarCshock
+          ./testme.py -all $TESTME_OPTIONS
+      - name: Ambipolar C Shock 3D
+        run: |
+          cd $IDEFIX_DIR/test/MHD/AmbipolarCshock3D
+          ./testme.py -all $TESTME_OPTIONS
+      - name: Resistive Alfvén wave
+        run: |
+          cd $IDEFIX_DIR/test/MHD/ResistiveAlfvenWave
+          ./testme.py -all $TESTME_OPTIONS
+      - name: Hall whistler waves
+        run: |
+          cd $IDEFIX_DIR/test/MHD/HallWhistler
+          ./testme.py -all $TESTME_OPTIONS
+
+  Fargo:
+    needs: [Linter, ShocksHydro, ParabolicHydro, ShocksMHD, ParabolicMHD]
+    runs-on: self-hosted
+    steps:
+      - name: Check out repo
+        uses: actions/checkout@v3
+        with:
+          submodules: recursive
+      - name: Fargo + planet
+        run: |
+          cd $IDEFIX_DIR/test/HD/FargoPlanet
+          ./testme.py -all $TESTME_OPTIONS
+      - name: Fargo MHD spherical
+        run: |
+          cd $IDEFIX_DIR/test/MHD/FargoMHDSpherical
+          ./testme.py -all $TESTME_OPTIONS
+
+  ShearingBox:
+    needs: [Linter, ShocksHydro, ParabolicHydro, ShocksMHD, ParabolicMHD]
+    runs-on: self-hosted
+    steps:
+      - name: Check out repo
+        uses: actions/checkout@v3
+        with:
+          submodules: recursive
+      - name: Hydro shearing box
+        run: |
+          cd $IDEFIX_DIR/test/HD/ShearingBox
+          ./testme.py -all $TESTME_OPTIONS
+      - name: MHD shearing box
+        run: |
+          cd $IDEFIX_DIR/test/MHD/ShearingBox
+          ./testme.py -all $TESTME_OPTIONS
+
+  SelfGravity:
+    needs: [Linter, ShocksHydro, ParabolicHydro, ShocksMHD, ParabolicMHD]
+    runs-on: self-hosted
+    steps:
+      - name: Check out repo
+        uses: actions/checkout@v3
+        with:
+          submodules: recursive
+      - name: Jeans Instability
+        run: |
+          cd $IDEFIX_DIR/test/SelfGravity/JeansInstability
+          ./testme.py -all $TESTME_OPTIONS
+      - name: Random sphere spherical
+        run: |
+          cd $IDEFIX_DIR/test/SelfGravity/RandomSphere
+          ./testme.py -all $TESTME_OPTIONS
+      - name: Random sphere cartesian
+        run: |
+          cd $IDEFIX_DIR/test/SelfGravity/RandomSphereCartesian
+          ./testme.py -all $TESTME_OPTIONS
+      - name: Uniform spherical collapse
+        run: |
+          cd $IDEFIX_DIR/test/SelfGravity/UniformCollapse
+          ./testme.py -all $TESTME_OPTIONS
 
-  VectorPotential:
-    needs: [Linter, Hydrodynamics, Magneto-Hydrodynamics, MPI]
+  Planet:
+    needs: [Linter, ShocksHydro, ParabolicHydro, ShocksMHD, ParabolicMHD]
     runs-on: self-hosted
     steps:
       - name: Check out repo
         uses: actions/checkout@v3
         with:
-          lfs: true
           submodules: recursive
-      # Manually do a git LFS https://github.com/actions/checkout/issues/270
-      - run: git lfs pull
-      - name: Run Vector Potential test
-        run: cd test && ./checks_vector_potential.sh $TEST_OPTIONS
+      - name: 3 body
+        run: |
+          cd $IDEFIX_DIR/test/Planet/Planet3Body
+          ./testme.py -all $TESTME_OPTIONS
+      - name: migration
+        run: |
+          cd $IDEFIX_DIR/test/Planet/PlanetMigration2D
+          ./testme.py -all $TESTME_OPTIONS
+      - name: planet-planet
+        run: |
+          cd $IDEFIX_DIR/test/Planet/PlanetPlanetRK42D
+          ./testme.py -all $TESTME_OPTIONS
+      - name: spiral wake
+        run: |
+          cd $IDEFIX_DIR/test/Planet/PlanetSpiral2D
+          ./testme.py -all $TESTME_OPTIONS
+      - name: torques
+        run: |
+          cd $IDEFIX_DIR/test/Planet/PlanetTorque3D
+          ./testme.py -all $TESTME_OPTIONS
+      - name: RK5
+        run: |
+          cd $IDEFIX_DIR/test/Planet/PlanetsIsActiveRK52D
+          ./testme.py -all $TESTME_OPTIONS
 
-  HighOrder:
-    needs: [Linter, Hydrodynamics, Magneto-Hydrodynamics, MPI]
+  Dust:
+    needs: [Linter, ShocksHydro, ParabolicHydro, ShocksMHD, ParabolicMHD]
     runs-on: self-hosted
     steps:
       - name: Check out repo
         uses: actions/checkout@v3
         with:
-          lfs: true
           submodules: recursive
-      # Manually do a git LFS https://github.com/actions/checkout/issues/270
-      - run: git lfs pull
-      - name: Run high order test
-        run: cd test && ./checks_highorder.sh $TEST_OPTIONS
+      - name: Energy conservation
+        run: |
+          cd $IDEFIX_DIR/test/Dust/DustEnergy
+          ./testme.py -all $TESTME_OPTIONS
+      - name: Dusty wave
+        run: |
+          cd $IDEFIX_DIR/test/Dust/DustyWave
+          ./testme.py -all $TESTME_OPTIONS
 
-  SinglePrecision:
-    needs: [Linter, Hydrodynamics, Magneto-Hydrodynamics, MPI]
+  Braginskii:
+    needs: [Linter, ShocksHydro, ParabolicHydro, ShocksMHD, ParabolicMHD]
     runs-on: self-hosted
     steps:
       - name: Check out repo
         uses: actions/checkout@v3
         with:
-          lfs: true
           submodules: recursive
-      # Manually do a git LFS https://github.com/actions/checkout/issues/270
-      - run: git lfs pull
-      - name: Run single precision test
-        run: cd test && ./checks_singleprecision.sh $TEST_OPTIONS
+      - name: MTI
+        run: |
+          cd $IDEFIX_DIR/test/MHD/MTI
+          ./testme.py -all $TESTME_OPTIONS
+      - name: Spherical anisotropic diffusion
+        run: |
+          cd $IDEFIX_DIR/test/MHD/sphBragTDiffusion
+          ./testme.py -all $TESTME_OPTIONS
+      - name: Spherical anisotropic viscosity
+        run: |
+          cd $IDEFIX_DIR/test/MHD/sphBragViscosity
+          ./testme.py -all $TESTME_OPTIONS
 
   Examples:
-    needs: [VectorPotential, HighOrder,SinglePrecision]
+    needs: [Fargo, Dust, Planet, ShearingBox, SelfGravity]
     runs-on: self-hosted
     steps:
       - name: Check out repo
         uses: actions/checkout@v3
         with:
-          lfs: true
           submodules: recursive
-      # Manually do a git LFS https://github.com/actions/checkout/issues/270
-      - run: git lfs pull
       - name: Run examples test
         run: cd test && ./checks_examples.sh $TEST_OPTIONS
 
   Utils:
-    needs: [VectorPotential, HighOrder,SinglePrecision]
+    needs: [Fargo, Dust, Planet, ShearingBox, SelfGravity]
     runs-on: self-hosted
     steps:
       - name: Check out repo
         uses: actions/checkout@v3
         with:
-          lfs: true
           submodules: recursive
-      # Manually do a git LFS https://github.com/actions/checkout/issues/270
-      - run: git lfs pull
-      - name: Run utils test
-        run: cd test && ./checks_utils.sh $TEST_OPTIONS
+      - name: Lookup table
+        run: |
+          cd $IDEFIX_DIR/test/utils/lookupTable
+          ./testme.py -all $TESTME_OPTIONS
+      - name: Dump Image
+        run: |
+          cd $IDEFIX_DIR/test/utils/dumpImage
+          ./testme.py -all $TESTME_OPTIONS

.gitignore

@@ -12,7 +12,7 @@ doc/source/xml/*
 
 # generated files
 *.log
-src/gitversion.hpp
+src/version.hpp
 **/libkokkos.a
 **/KokkosCore_config.h
 build
@@ -34,6 +34,7 @@ test/**/Makefile
 test/**/KokkosCore*
 test/**/*.csv
 test/**/*.pyc
+test/**/*.dat
 
 # machine specific cache and hidden files
 .*