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V2.2.00 #313

Merged
merged 96 commits into from
Jan 18, 2025
Merged

V2.2.00 #313

merged 96 commits into from
Jan 18, 2025

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glesur
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@glesur glesur commented Jan 18, 2025

Changed

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glesur and others added 30 commits July 9, 2024 17:33
@glesur
ensure that Fargo can't be used with too low DIMENSIONS (#250)
36e8c24 
Following problems encountered by T. Jannaud on 1D spherical tests.
@glesur
Doc fix (#251)
cb5117c 
* benchmarks have tracers disabled

* fix typo in AdAstra configuration options
@glesur
fix #252 (#253)
040592b
@glesur
avoid implicit conversion to double in VTK I/O routines (#255)
0a6193d 
* avoid implicit conversion to double in VTK I/O routines

* consolidated implementation of BigEndian
- works for any type size
- checks that we are dealing with numbers
- remove pointers in favor of more elegant c++ unions

* use proper lower case for variables and functions ("bigEndian")
@nicolasaunai
set built type as default (allow user override) (#256)
1859ad5
@vdbma
Make shockFlattening public (#257)
e5ca2b5 
Co-authored-by: Marc Van den Bossche <marc.vanden-bossche@univ-grenoble-alpes.fr>
@glesur
Check for successful write in serial (#260)
a020a3f
@dutta-alankar
[FIX] xdmf datatype agnostic dump (#261)
3629695 
Co-authored-by: Alankar Dutta <alankard@MB-167.local>
@ThomasJannaudCAM
Update setup.cpp.rst (#264)
dcaefdf 
Corrected a typo on "restart from a dump", arrow that should have been a point
@dutta-alankar
Minor correction to have the filesystem header same as dump and vtk (#…
6657a0a 
…269)

* [FIX] xdmf datatype agnostic dump

* [ENH] xdmf io now supports experimental filesystems like dump and vtk

---------

Co-authored-by: Alankar Dutta <alankard@MB-167.local>
@glesur
add Python binding to cmake
c097459
@glesur
working version with pybind11
8a07eaf
@glesur
tentative automatic cast of IdefixArray
1881182 
@
@glesur
missing files
76bee8c
@glesur
Fully working python output routines
10dc6bf
@glesur
working now with initial condition (but copies won't work!)
227e375
@glesur
working version with possibility to initialize the flow from python
c2d73e6
@glesur
add BXs to python bindings
7dc7553
@glesur
fix BXs indices
8aa7e93 
add time in datablockHost
@glesur
change init list to work without python
134ca6b
@glesur
generalised call script with variadic template parameters
8f6cf5d 
add the output number n to the list of parameters passed to the output
python routine
@glesur
-fix warning in cmake
6985443 
-add a readme
@glesur
typos
d3b3bb7
@glesur
change naming
a92732f
@glesur
fix lack of initialisation of datablockHost's dt and t after
1c29ebb 
construction

fix #276
@neutrinoceros
MNT: fix linting with cpplint 2.0.0 (#279)
427982a
@neutrinoceros
STY: locally disable linting around #include <filesystem> (#281)
84c1763
@neutrinoceros @glesur
MNT: fix linting with cpplint 2.0.0 (#279)
d0ace44
@neutrinoceros @glesur
STY: locally disable linting around #include <filesystem> (#281)
4f48ac6
@glesur
Simplify input file for DIMENSIONS < 3 setups (#274)
9d92bfe
glesur and others added 28 commits December 16, 2024 09:18
@glesur
fix #275
003b28c
@glesur
Merge pull request #298 from idefix-code/kokkos4.5
feae278 
Bump up to Kokkos 4.5
@glesur
test the documentation generation workflow
63f6a4a
@pre-commit-ci-lite
[pre-commit.ci lite] apply automatic fixes
af3d563
@glesur
update path
c060c41
@glesur
typo
c08fc76
@glesur
add doxygen to the build
3eaa696
@glesur
doxygen again
dee00e5
@glesur
clean naming
bfa54f7 
no submodule (experimental)
@glesur
Merge pull request #305 from idefix-code/docCI
2d2dcd0 
MNT: test the documentation generation workflow
@glesur
Merge branch 'develop' into pythonBinding
d881515
@neutrinoceros
MNT: give a unique name to documentation build workflows
66be685
@glesur
implement MPi data gathering for pydefix
9065365 
Working implementation but:
- should write the type caster for 1D,2D and 3D following the 4D one
- should implement a proper python type for the grid
- check boundary conditions
@glesur
better gathering with/without boundaries
a37b5f1
@glesur
use numpy array to avoid ownership errors
8b89c24
@glesur
missplaced namespace
f00986c
@glesur
make python auto detection work on MacOs. No need to specify pybind11
30f8433 
path anymore
@glesur
type caster for 2D and 1D numpy->Idefix Array (not used as of now)
a541532
@glesur
proper example with MPI reduction
ed7de3c
@glesur
add documentation for pydefix
a7d809a
@glesur
Merge pull request #306 from neutrinoceros/mnt/doc_workflow_name
9c46b28 
MNT: give a unique name to documentation build workflows
@glesur
missing initialisation of boundary conditions in dataBlockHost
682f93b
@glesur
update recommended configuration on Adastra following discussion with
f89fc65 
Paul Segretain to be compatible with pydefix
@glesur
test MPI using Send/Recv instead of reduction
4ab8212
@glesur
Merge pull request #310 from idefix-code/useMPISendForTesting
7b2910c 
test MPI GPU awareness using Send/Recv instead of MPI_Allreduce
@glesur
Merge pull request #277 from idefix-code/pythonBinding
42b474f 
Add python binding for initial conditions and outputs
@glesur
update version number
ee6dd0b
@glesur
update changelog
5d1a15d
@glesur glesur merged commit 54482d5 into master Jan 18, 2025
76 checks passed
@glesur glesur deleted the V2.2.00 branch January 18, 2025 20:19
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8 participants
@glesur @nicolasaunai @vdbma @dutta-alankar @ThomasJannaudCAM @neutrinoceros @Anto6453 @nscepi