This repository has been archived by the owner on Oct 11, 2023. It is now read-only.
First release of ORSON Nextflow workflow to automated proteome and transcriptome functional annotation.
Install:
- All tools are automatically installed via pre-built singularity images available at SeBiMER ftp :ftp://ftp.ifremer.fr/ifremer/dataref/bioinfo/sebimer/tools/ORSON/
- Only clonning the pipeline from the GitHub project
It includes:
- evaluation of transcriptome completness using BUSCO
- search of orthogroup using eggNOG-mapper
- query annotation using PLAST, BLAST or Diamond
- functional annotation using InterProScan
- hit annotation using BeeDeeM
- visualisation of result using BlastViewer