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Release summary

This is an minor release

Test environments

  • local mac OS install, R 3.6.0
  • ubuntu 14.04 (on travis-ci), R-devel, R 3.6.0, R 3.5.2, R 3.4.4, R 3.3.3, R 3.2.5.
  • mac OS 10.3.3 (on travis-ci) R 3.6.0
  • win-builder (devel)

R CMD check results

0 ERRORs | 0 WARNINGs | 1 NOTE

  • checking installed package size ... NOTE installed size is 8.4Mb sub-directories of 1Mb or more: libs 6.1Mb

revdepcheck results

We checked 1983 reverse dependencies (1765 from CRAN + 218 from BioConductor), comparing R CMD check results across CRAN and dev versions of this package.

  • We saw 8 new problems
  • We failed to check 82 packages

Issues with CRAN packages are summarised below.

New problems

Missing or unexported object: ‘dplyr::rbind_all’

aemo boxr ggvis gQTLstats mlVAR Rariant

Emails or pull requests sent. The rbind_all() function has finally been removed after being deprecated for a long time.

Unexported objects imported by ':::' calls: ‘dplyr:::compat_lazy_dots’ ‘dplyr:::find_var’

dbplyr

Pull request sent.

explore

Package explore fails because of this fix:

  • group_by() does not create an arbitrary NA group when grouping by factors with drop = TRUE (#4460).

We've sent a pull request.

checking S3 generic/method consistency ... WARNING

group_modify() formals have changed, this affects package egor, pull request sent

Already fixed

broomExtra development version appears to work, the failures of packages ggstatsplot and groupedstats are related.

Other issues

  • Packages DeLorean, geneXtendeR, MonetDBLite, OncoSimulR, perturbatr, sigmajs timed out
  • Package MXM had a NOTE about install size
  • Packages rgho and TCGAutils failed because of a remote api call

Failed to check

  • ACDm (NA)
  • ADMMsigma (NA)
  • airGR (NA)
  • BAS (NA)
  • BayesPostEst (NA)
  • BMTME (NA)
  • BradleyTerryScalable (NA)
  • brunnermunzel (NA)
  • bsam (NA)
  • CaseBasedReasoning (NA)
  • CB2 (NA)
  • circumplex (NA)
  • clustermq (NA)
  • colorednoise (NA)
  • corrcoverage (NA)
  • Countr (NA)
  • cpr (NA)
  • crawl (NA)
  • DataVisualizations (NA)
  • DeLorean (NA)
  • DepthProc (NA)
  • dexter (NA)
  • dodgr (NA)
  • dtwclust (NA)
  • dynfrail (NA)
  • exuber (NA)
  • fable (NA)
  • fastLink (NA)
  • fingertipsR (NA)
  • fourierin (NA)
  • FSelectorRcpp (NA)
  • gap (NA)
  • GenomicMating (NA)
  • goldi (NA)
  • graphicalVAR (NA)
  • heatwaveR (NA)
  • idefix (NA)
  • iRF (NA)
  • lpirfs (NA)
  • mfbvar (NA)
  • miceFast (NA)
  • MixMatrix (NA)
  • momentuHMM (NA)
  • morse (NA)
  • mrgsolve (NA)
  • nlmixr (NA)
  • oceanis (NA)
  • openair (NA)
  • partition (NA)
  • pccc (NA)
  • phase1PRMD (NA)
  • phenofit (NA)
  • PLNmodels (NA)
  • pomp (NA)
  • poppr (NA)
  • PPforest (NA)
  • psychonetrics (NA)
  • quanteda (NA)
  • quokar (NA)
  • qwraps2 (NA)
  • resautonet (NA)
  • rgho (NA)
  • RSSL (NA)
  • RxODE (NA)
  • sarima (NA)
  • scanstatistics (NA)
  • SCPME (NA)
  • sf (NA)
  • sigminer (NA)
  • SimBIID (NA)
  • simputation (NA)
  • simts (NA)
  • SpaCCr (NA)
  • stcos (NA)
  • telefit (NA)
  • vapour (NA)
  • VarSelLCM (NA)
  • vlad (NA)
  • walker (NA)
  • weibulltools (NA)
  • WHO (NA)
  • windfarmGA (NA)