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Make available via Bioconda #45

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FriederikeHanssen opened this issue Sep 7, 2023 · 2 comments
Open

Make available via Bioconda #45

FriederikeHanssen opened this issue Sep 7, 2023 · 2 comments

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@FriederikeHanssen
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Hi! Would it be possible to make this tool available via bioconda for easier installation and automatic containerization via biocontainers?

Cheers, Rike
@GermanDemidov
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Hi, I plan to containerize the tool, but it will require some time to understand the requirements bioconda has and thus it has a very low priority right now, so I doubt it will happen in any forseeable future.

This is the installation script which should be rather easy:

https://github.com/imgag/megSAP/blob/master/data/install_deps_clincnv.R

Everything else works out of the box.

@GermanDemidov
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https://github.com/imgag/megSAP/blob/master/data/download_tools.sh the recipy for the installation is also provided here

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@GermanDemidov @FriederikeHanssen