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VcfStreamSort tool help

VcfStreamSort (2018_11-55-g768b41c)

Sort entries of a VCF file according to genomic position using a stream. Variants must be grouped by chromosome!

Optional parameters:
  -in <file>   Input VCF file. If unset, reads from STDIN.
               Default value: ''
  -out <file>  Output VCF list. If unset, writes to STDOUT.
               Default value: ''
  -n <int>     Number of variants to cache for sorting.
               Default value: '10000'

Special parameters:
  --help       Shows this help and exits.
  --version    Prints version and exits.
  --changelog  Prints changeloge and exits.
  --tdx        Writes a Tool Definition Xml file. The file name is the application name with the suffix '.tdx'.

VcfStreamSort changelog

VcfStreamSort 2018_11-55-g768b41c

2019-01-08 Added REF, ALT and INFO fields to sorting for a defined output order.
2016-06-27 Initial implementation.

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