Skip to content

2021_06
Compare
Choose a tag to compare
@marc-sturm marc-sturm released this 15 Jun 08:54
· 1737 commits to master since this release
2021_06
7061c6b

June 2021 release:

  • General: Improved GRCh38 support in several tools.
  • General: Using BGZIP for compressed VCFs now to allow indexing them with tabix.
  • VcfAnnotateFromBed: Made separator configurable; Added check for separator in source BED file; Fixed broken output VCF if input has no FORMAT column.
  • VcfAnnotateFromVcf: Fixed crash in VCF header parser.
  • NGSDExportSamples: Added ancestry column.
  • SampleAncestry: Improved runtime and memory use.
  • SampleGender: Improved runtime for algorithm 'hetx'.
  • SomaticQC: Added support for mutect2.
  • NGSD:
    • Added disease status 'Unclear' to table 'sample'.
    • Added table 'processed_sample_ancestry'.
    • Added percent occupied to 'runqc_lane' (for Illumina NovaSeq).

Please do not use the auto-generated 'Source code' packages - they will not work!

Assets 3
Loading