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2022_04

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@marc-sturm marc-sturm released this 08 Apr 09:08
· 1460 commits to master since this release

April 2022 release:

  • general: updated default genome build from 'hg19' to 'hg38' for all tools that require genome builds.
  • added tools: BedLiftOver, BedpeSort, VcfAnnotateFromBigWig.
  • NGSD:
    • user: added user type enum value 'restricted_user' and associated table 'user_permissions'.
    • sample: added sample type enum value 'cfDNA'.
    • sample: added field 'tissue'.
    • added table: 'variant_literature' for publications associated with a variant.
    • sv_deletion/sv_duplication/sv_insertion/sv_inversion/sv_translocation: added field 'genotype'.

Please do not use the auto-generated 'Source code' packages - they will not work!