Skip to content

2022_07
Compare
Choose a tag to compare
@marc-sturm marc-sturm released this 08 Jul 13:58
· 1286 commits to master since this release
2022_07
c71f0a2

Juli 2022 release:

  • VcfAnnotateFromVcf: refactoring of command line parameters and updated documentation.
  • SampleSimilarity: changed number of SNPs for BAM mode, MODIFIER impact variants are now ignored in GSvar mode to make scores more similar between exomes and genomes, updated documentation.
  • MappingQC: added metrics for uniformity of coverage in WGS mode.
  • HgvsToVcf: Added handling of unnecessary sequences in 'delins', added support for dup/del with trailing sequence.
  • VcfSort: files without FORMAT/SAMPLE columns are can now be processed without adding the column.
  • VcfLeftNormalize: improved runtime when 'stream' parameter is not used.
  • added tools: VcfAnnotateHexplorer, HgvsToVcf, VcfAnnotateConsequence
  • NGSD:
    • transcript: added biotype, MANE Select flag, MANE Plus Clinical flag, Ensembl canonical flag.
    • variant: removed 1000g AF.
    • sample: added patient identifer, added tissue enum.

Please do not use the auto-generated 'Source code' packages - they will not work!

Assets 3
Loading