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@marc-sturm marc-sturm released this 03 Jul 13:47
· 684 commits to master since this release
2023_06
68dbf8e

June 2023 release:

  • new tools: GenesToTranscripts, NGSDImportSampleQC, GenesToTranscripts, TranscriptsToBed, NGSDExportGff.
  • BamToFastq: Added support for single-end.
  • MappingQC: Added support for read QC.
  • VcfToBedpe: Added support for Sniffles, cuteSV and dipdiff.
  • FastqExtract: Added parameter 'long_read'.
  • ReadQC: Added parameter 'long_read'.
  • NGSDExportSamples: added parameters 'run_after' and 'no_normal'.
  • NGSDExportAnnotationData: speed-up by parallelization.
  • NGSD
    • Added 'side' enum to 'sequencing_run' table
    • Added 'germline_mosaic' to 'variant' table
    • Added 'hpo_obsolete' table with obsolete HPO terms
    • Refactoring of 'expression' and 'gene_expression' tables to speed-up queries

Note: Please do not use the auto-generated 'Source code' packages - they will not work!

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