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PhyloTrace.yml
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PhyloTrace.yml
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name: PhyloTrace
channels:
- conda-forge
- bioconda
- defaults
dependencies:
- r-base=4.3.2
- r-remotes=2.5.0
- kma=1.4.14
- ncbi-amrfinderplus=3.12.8
- parallel=20240522
- pblat=2.5.1
- r-bh=1.81.0-1
- r-biocmanager=1.30.22
- bioconductor-biostrings=2.70.1
- bioconductor-ggtree=3.10.0
- bioconductor-ggtreeextra=1.12.0
- bioconductor-biocversion=3.17.1
- bioconductor-treeio=1.26.0
- r-dbi=1.1.3
- r-mass=7.3_60
- r-matrix=1.6_1.1
- r-r.methodss3=1.8.2
- r-r.oo=1.25.0
- r-r.utils=2.12.3
- r-r6=2.5.1
- r-rcolorbrewer=1.1_3
- r-rcpp=1.0.11
- r-anytime=0.3.9
- r-ape=5.7_1
- r-aplot=0.2.2
- r-askpass=1.2.0
- r-backports=1.4.1
- r-base64enc=0.1_3
- r-bit=4.0.5
- r-bit64=4.0.5
- r-blob=1.2.4
- r-broom=1.0.5
- r-bslib=0.7.0
- r-bsicons=0.1.1
- r-cachem=1.1.0
- r-callr=3.7.3
- r-cellranger=1.1.0
- r-cli=3.6.3
- r-clipr=0.8.0
- r-coda=0.19_4
- r-colorspace=2.1_0
- r-commonmark=1.9.0
- r-conflicted=1.2.0
- r-cowplot=1.1.3
- r-cpp11=0.4.6
- r-crayon=1.5.2
- r-dashboardthemes=1.1.6
- r-data.table=1.14.8
- r-dbplyr=2.3.4
- r-digest=0.6.36
- r-downloader=0.4
- r-dplyr=1.1.4
- r-dt=0.33
- r-dtplyr=1.3.1
- r-ellipsis=0.3.2
- r-evaluate=0.24
- r-fansi=1.0.5
- r-farver=2.1.1
- r-fastmap=1.2.0
- r-fastmatch=1.1_4
- r-fontawesome=0.5.2
- r-forcats=1.0.0
- r-fs=1.6.4
- r-gargle=1.5.2
- r-generics=0.1.3
- r-ggfun=0.1.3
- r-ggnetwork=0.5.12
- r-ggnewscale=0.4.9
- r-ggplot2=3.4.4
- r-ggplotify=0.1.2
- r-ggrepel=0.9.4
- r-glue=1.7.0
- r-googledrive=2.1.1
- r-googlesheets4=1.1.1
- r-gridGraphics=0.5_1
- r-gtable=0.3.4
- r-haven=2.5.3
- r-highr=0.11
- r-hms=1.1.3
- r-htmltools=0.5.8.1
- r-htmlwidgets=1.6.4
- r-httpuv=1.6.11
- r-httr=1.4.7
- r-ids=1.0.1
- r-igraph=1.5.1
- r-isoband=0.2.7
- r-jquerylib=0.1.4
- r-jsonlite=1.8.8
- r-kableExtra=1.3.4
- r-knitr=1.48
- r-labeling=0.4.3
- r-later=1.3.1
- r-lattice=0.22_5
- r-lazyeval=0.2.2
- r-lifecycle=1.0.4
- r-logr=1.3.8
- r-lubridate=1.9.3
- r-magrittr=2.0.3
- r-memoise=2.0.1
- r-mgcv=1.9_0
- r-mime=0.12
- r-modelr=0.1.11
- r-munsell=0.5.0
- r-network=1.18.1
- r-nlme=3.1_163
- r-openssl=2.1.1
- r-patchwork=1.1.3
- r-phangorn=2.11.1
- r-pillar=1.9.0
- r-pkgconfig=2.0.3
- r-prettyunits=1.2.0
- r-processx=3.8.2
- r-progress=1.2.2
- r-promises=1.2.1
- r-proxy=0.4_27
- r-ps=1.7.5
- r-purrr=1.0.2
- r-withr=2.5.1
- r-quadprog=1.5_8
- r-ragg=1.2.5
- r-rappdirs=0.3.3
- r-rcolorbrewer=1.1_3
- r-readr=2.1.4
- r-readxl=1.4.3
- r-rematch=2.0.0
- r-rematch2=2.1.2
- r-reprex=2.0.2
- r-rhandsontable=0.3.8
- r-rlang=1.1.4
- r-rmarkdown=2.27
- r-rstudioapi=0.15.0
- r-rvest=1.0.3
- r-sass=0.4.9
- r-scales=1.2.1
- r-selectr=0.4_2
- r-shiny=1.8.1.1
- r-shinybs=0.61.1
- r-shinyFiles=0.9.3
- r-shinyWidgets=0.8.0
- r-shinydashboard=0.7.2
- r-shinyjs=2.1.0
- r-sna=2.7_1
- r-sourcetools=0.1.7_1
- r-statnet.common=4.9.0
- r-stringi=1.7.12
- r-stringr=1.5.0
- r-svglite=2.1.2
- r-sys=3.4.2
- r-systemfonts=1.0.5
- r-textshaping=0.3.7
- r-tibble=3.2.1
- r-tidyr=1.3.0
- r-tidyselect=1.2.0
- r-tidytree=0.4.5
- r-tidyverse=2.0.0
- r-timechange=0.2.0
- r-tinytex=0.52
- r-tzdb=0.4.0
- r-utf8=1.2.3
- r-uuid=1.1_1
- r-vctrs=0.6.4
- r-viridis=0.6.5
- r-viridisLite=0.4.2
- r-vroom=1.6.4
- r-webshot=0.5.5
- r-withr=2.5.1
- r-xfun=0.46
- r-xml2=1.3.5
- r-xtable=1.8_4
- r-yaml=2.3.10
- r-yulab.utils=0.1.0
- r-zoo=1.8_12