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add cfbt01 #777

Merged
merged 5 commits into from
Oct 11, 2024
Merged

add cfbt01 #777

merged 5 commits into from
Oct 11, 2024

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BFalquet
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add cfbt01 to catalog (not so many options are required by the GDSR)

thank you for the review

@BFalquet BFalquet mentioned this pull request Sep 11, 2024
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github-actions bot commented Sep 11, 2024 •
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Code Coverage Summary

Filename                     Stmts    Miss  Cover    Missing
-------------------------  -------  ------  -------  --------------------------------------------------------------------
R/ael01_nollt.R                  6       0  100.00%
R/ael02.R                       27       0  100.00%
R/ael03.R                       34       0  100.00%
R/aet01_aesi.R                 148       1  99.32%   214
R/aet01.R                      104       5  95.19%   77-80, 183
R/aet02.R                       44       0  100.00%
R/aet03.R                       76       0  100.00%
R/aet04.R                       88       0  100.00%
R/aet05_all.R                   11       0  100.00%
R/aet05.R                       44       1  97.73%   116
R/aet10.R                       42       0  100.00%
R/assertions.R                  93       7  92.47%   11-16, 123
R/cfbt01.R                     107       0  100.00%
R/checks.R                      14       0  100.00%
R/chevron_tlg-S4class.R         24       0  100.00%
R/chevron_tlg-S4methods.R      149       0  100.00%
R/cml02a_gl.R                    8       0  100.00%
R/cmt01a.R                      52       0  100.00%
R/coxt01.R                      49       1  97.96%   130
R/dmt01.R                       38       0  100.00%
R/dst01.R                       94       0  100.00%
R/dtht01.R                     102       6  94.12%   51, 55-59
R/egt02.R                       35       0  100.00%
R/egt03.R                       80       1  98.75%   157
R/egt05_qtcat.R                 78       0  100.00%
R/ext01.R                       59       1  98.31%   51
R/fstg01.R                      43       0  100.00%
R/fstg02.R                      48       0  100.00%
R/kmg01.R                       35       6  82.86%   35-40
R/lbt04.R                       90       0  100.00%
R/lbt05.R                       66       2  96.97%   128-129
R/lbt06.R                       70       0  100.00%
R/lbt07.R                       93       0  100.00%
R/lbt14.R                       64       0  100.00%
R/lbt15.R                       20       0  100.00%
R/mht01.R                       55       0  100.00%
R/mng01.R                       95      12  87.37%   86, 90-94, 126-130, 133, 175
R/pdt01.R                       60       0  100.00%
R/pdt02.R                       68       0  100.00%
R/report_null.R                 29       0  100.00%
R/rmpt01.R                      59       1  98.31%   132
R/rmpt06.R                     134       3  97.76%   209-212
R/rspt01.R                      73       3  95.89%   156-159
R/rtables_utils.R              319      23  92.79%   51, 68, 119, 243, 264, 372-379, 446, 461-463, 465, 534-540, 550, 571
R/standard_rules.R              13       0  100.00%
R/ttet01.R                     120       3  97.50%   202-205
R/utils.R                      178      13  92.70%   277-280, 284-287, 314, 318, 330, 332, 344
R/vst02.R                       45       1  97.78%   109
R/zzz.R                          1       1  0.00%    2
TOTAL                         3384      91  97.31%

Diff against main

Filename                     Stmts    Miss  Cover
-------------------------  -------  ------  --------
R/ael01_nollt.R                -15      -1  +4.76%
R/ael02.R                      +27       0  +100.00%
R/ael03.R                      +34       0  +100.00%
R/aet01_aesi.R                  -2       0  -0.01%
R/aet01.R                      +10      +4  -3.74%
R/aet02.R                       -6       0  +100.00%
R/aet03.R                       -1       0  +100.00%
R/aet04.R                       -1       0  +100.00%
R/aet05.R                       +4       0  +0.23%
R/aet10.R                       -1       0  +100.00%
R/assertions.R                  -6      +1  -1.47%
R/chevron_tlg-S4class.R         +6       0  +100.00%
R/chevron_tlg-S4methods.R      +13      -4  +2.94%
R/cml02a_gl.R                   +8       0  +100.00%
R/cmt01a.R                      -6      -6  +10.34%
R/coxt01.R                      +1       0  +0.04%
R/dmt01.R                       +9       0  +100.00%
R/dst01.R                       -1       0  +100.00%
R/dtht01.R                      -1       0  -0.06%
R/egt02.R                       -2       0  +100.00%
R/egt03.R                       +3       0  +0.05%
R/egt05_qtcat.R                 -1       0  +100.00%
R/ext01.R                       -1       0  -0.03%
R/fstg01.R                      -7       0  +100.00%
R/fstg02.R                      -7       0  +100.00%
R/kmg01.R                       +6      +6  -17.14%
R/lbt04.R                       -1       0  +100.00%
R/lbt05.R                       -1      -3  +4.43%
R/lbt06.R                       -2      -3  +4.17%
R/lbt07.R                       -1       0  +100.00%
R/lbt14.R                       -2       0  +100.00%
R/mht01.R                      -16       0  +100.00%
R/mng01.R                       -1     +11  -11.59%
R/pdt02.R                       -1       0  +100.00%
R/report_null.R                +29       0  +100.00%
R/rmpt01.R                      -6     -10  +15.23%
R/rmpt06.R                    +134      +3  +97.76%
R/rtables_utils.R              +19      +4  -0.88%
R/standard_rules.R              +2       0  +100.00%
R/ttet01.R                      +3       0  +0.06%
R/utils.R                      +94     +13  -7.30%
R/vst02.R                       -1       0  -0.05%
R/zzz.R                         +1      +1  +100.00%
TOTAL                         +313     +16  -0.25%

Results for commit: ab88520

Minimum allowed coverage is 80%

♻️ This comment has been updated with latest results

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github-actions bot commented Sep 11, 2024 •
edited
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Unit Tests Summary

  1 files   57 suites   2m 44s ⏱️
260 tests 189 ✅  71 💤 0 ❌
514 runs  333 ✅ 181 💤 0 ❌

Results for commit ab88520.

♻️ This comment has been updated with latest results.

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github-actions bot commented Sep 11, 2024 •
edited
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Unit Test Performance Difference

Test Suite $Status$ Time on main $±Time$ $±Tests$ $±Skipped$ $±Failures$ $±Errors$
aet04 💚 $11.47$ $-7.36$ $-8$ $+2$ $0$ $0$
chevron_tlg-methods 💚 $8.14$ $-2.95$ $-6$ $+10$ $0$ $0$
coxt01 💚 $2.03$ $-1.46$ $-6$ $+1$ $0$ $0$
coxt02 💚 $2.43$ $-1.65$ $-6$ $+1$ $0$ $0$
ext01 💚 $5.35$ $-1.02$ $-2$ $+7$ $0$ $0$
rmpt03 💚 $2.21$ $-1.04$ $-4$ $+3$ $0$ $0$
rspt01 💚 $7.86$ $-3.68$ $-12$ $+7$ $0$ $0$
ttet01 💚 $5.31$ $-2.52$ $-6$ $+4$ $0$ $0$
utils 💚 $2.50$ $-2.35$ $-61$ $+1$ $0$ $0$
Additional test case details
Test Suite $Status$ Time on main $±Time$ Test Case
aet04 💚 $2.07$ $-1.28$ aet04_can_handle_NA_values
aet04 💚 $9.40$ $-6.08$ aet04_can_handle_some_NA_values
chevron_tlg-methods 💚 $2.20$ $-1.19$ script_funs_generates_a_valid_script
coxt01 💚 $2.01$ $-1.47$ coxt01_can_handle_some_NA_values
coxt02 💚 $2.42$ $-1.66$ coxt02_can_handle_some_NA_values
utils 💀 $0.01$ $-0.01$ convert_to_month_warning_messages_as_expected
utils 💀 $0.02$ $-0.02$ convert_to_month_work_as_expected
utils 💀 $0.01$ $-0.01$ do_call_errors_as_expected
utils 💀 $0.01$ $-0.01$ do_call_work_as_expected
utils 💀 $0.01$ $-0.01$ droplevels.character_works_as_expected
utils 💀 $0.03$ $-0.03$ execute_with_args_works_as_expected
utils 💀 $0.01$ $-0.01$ expand_list_works
utils 💀 $0.01$ $-0.01$ format_date_works_as_expected_for_Date
utils 💀 $0.01$ $-0.01$ format_date_works_as_expected_for_POSIXct
utils 💀 $0.02$ $-0.02$ get_section_div_works
utils 💀 $0.95$ $-0.95$ gg_list_is_deprecated
utils 💀 $0.02$ $-0.02$ gg_theme_chevron_works_as_expected
utils 💀 $0.97$ $-0.97$ grob_list_is_deprecated
utils 💀 $0.01$ $-0.01$ lvls.character_works_as_expected
utils 💀 $0.01$ $-0.01$ lvls.default_works_as_expected
utils 💀 $0.01$ $-0.01$ lvls.factor_works_as_expected
utils 💀 $0.01$ $-0.01$ modify_character_works
utils 💀 $0.01$ $-0.01$ modify_default_args_works_as_expected
utils 💀 $0.01$ $-0.01$ quote_str_works_as_expected
utils 💀 $0.02$ $-0.02$ set_section_div_works

Results for commit eb4db8a

♻️ This comment has been updated with latest results.

@clarkliming
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GDSR suggest to allow displaying value at visit only. is it possible in chevron?

clarkliming
clarkliming approved these changes Oct 11, 2024
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looks good to me!

@BFalquet @clarkliming
Update vignettes/chevron_catalog.rmd
ab88520 
Liming's suggestion

Co-authored-by: Liming <36079400+clarkliming@users.noreply.github.com>
Signed-off-by: b_falquet <64274616+BFalquet@users.noreply.github.com>
@BFalquet BFalquet merged commit cb59c7b into main Oct 11, 2024
26 checks passed
@BFalquet BFalquet deleted the cfbt01_catalog@main branch October 11, 2024 12:06
@github-actions github-actions bot locked and limited conversation to collaborators Oct 11, 2024
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@clarkliming clarkliming clarkliming approved these changes

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@BFalquet @clarkliming