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update snapshots with new align #58

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Aug 23, 2023
Merged

update snapshots with new align #58

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6c9141f
update snapshots with new align
Melkiades Jul 17, 2023
64c6310
Update DESCRIPTION
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ae076b0
did it change?
Melkiades Jul 18, 2023
0245895
Merge branch '57_fix_after_align_left@main' of github.com:insightseng…
Melkiades Jul 18, 2023
38ccfee
why did this change?
Melkiades Jul 18, 2023
5e33da2
Merge branch 'main' into 57_fix_after_align_left@main
Melkiades Jul 18, 2023
f2e1cde
snapshot
Melkiades Jul 18, 2023
eb96e7d
refixing listings
Melkiades Jul 19, 2023
567d28f
cache updated
Melkiades Jul 19, 2023
7744b8b
Update DESCRIPTION
Melkiades Jul 19, 2023
9c75cad
Merge branch 'main' into 57_fix_after_align_left@main
Melkiades Aug 22, 2023
0566259
updating description with most recent things
Melkiades Aug 22, 2023
f268fea
No more std p-value
Melkiades Aug 22, 2023
f94357a
why this changed?
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54fbbe0
why this changed 2.0
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listing changes
Melkiades Aug 22, 2023
234ff79
substituting all summarize_vars with analyze_vars
Melkiades Aug 22, 2023
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4 changes: 2 additions & 2 deletions DESCRIPTION
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Expand Up @@ -21,9 +21,9 @@ License: Apache License 2.0 | file LICENSE
URL: https://github.com/insightsengineering/scda.test/
BugReports: https://github.com/insightsengineering/scda.test/issues
Depends:
formatters (>= 0.5.0.9002),
formatters (>= 0.5.0.9005),
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R (>= 3.6),
rlistings (>= 0.2.2.9001),
rlistings (>= 0.2.2.9002),
rtables (>= 0.6.1.9007),
tern (>= 0.8.4.9000)
Imports:
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20 changes: 10 additions & 10 deletions tests/testthat/_snaps/listing_ael01.md
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# AEL01 listing is produced correctly

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tests/testthat/_snaps/listing_ael01.md#L1 

"correctly" can weaken meaning

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result
Expand All @@ -9,14 +9,14 @@
Investigator-Specified
MedDRA System Organ Class MedDRA Preferred Term MedDRA Lowest Level Term Adverse Event Term
—————————————————————————————————————————————————————————————————————————————————————————————————————
cl A dcd A.1.1.1.1 llt A.1.1.1.1 trm A.1.1.1.1
dcd A.1.1.1.2 llt A.1.1.1.2 trm A.1.1.1.2
cl B dcd B.1.1.1.1 llt B.1.1.1.1 trm B.1.1.1.1
dcd B.2.1.2.1 llt B.2.1.2.1 trm B.2.1.2.1
dcd B.2.2.3.1 llt B.2.2.3.1 trm B.2.2.3.1
cl C dcd C.1.1.1.3 llt C.1.1.1.3 trm C.1.1.1.3
dcd C.2.1.2.1 llt C.2.1.2.1 trm C.2.1.2.1
cl D dcd D.1.1.1.1 llt D.1.1.1.1 trm D.1.1.1.1
dcd D.1.1.4.2 llt D.1.1.4.2 trm D.1.1.4.2
dcd D.2.1.5.3 llt D.2.1.5.3 trm D.2.1.5.3
cl A dcd A.1.1.1.1 llt A.1.1.1.1 trm A.1.1.1.1
dcd A.1.1.1.2 llt A.1.1.1.2 trm A.1.1.1.2
cl B dcd B.1.1.1.1 llt B.1.1.1.1 trm B.1.1.1.1
dcd B.2.1.2.1 llt B.2.1.2.1 trm B.2.1.2.1
dcd B.2.2.3.1 llt B.2.2.3.1 trm B.2.2.3.1
cl C dcd C.1.1.1.3 llt C.1.1.1.3 trm C.1.1.1.3
dcd C.2.1.2.1 llt C.2.1.2.1 trm C.2.1.2.1
cl D dcd D.1.1.1.1 llt D.1.1.1.1 trm D.1.1.1.1
dcd D.1.1.4.2 llt D.1.1.4.2 trm D.1.1.4.2
dcd D.2.1.5.3 llt D.2.1.5.3 trm D.2.1.5.3

20 changes: 10 additions & 10 deletions tests/testthat/_snaps/listing_ael01_nollt.md
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# AEL01_NOLLT listing is produced correctly

Check notice on line 1 in tests/testthat/_snaps/listing_ael01_nollt.md

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tests/testthat/_snaps/listing_ael01_nollt.md#L1 

"correctly" can weaken meaning

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result
Expand All @@ -9,14 +9,14 @@
Investigator-Specified
MedDRA System Organ Class MedDRA Preferred Term Adverse Event Term
——————————————————————————————————————————————————————————————————————————
cl A dcd A.1.1.1.1 trm A.1.1.1.1
dcd A.1.1.1.2 trm A.1.1.1.2
cl B dcd B.1.1.1.1 trm B.1.1.1.1
dcd B.2.1.2.1 trm B.2.1.2.1
dcd B.2.2.3.1 trm B.2.2.3.1
cl C dcd C.1.1.1.3 trm C.1.1.1.3
dcd C.2.1.2.1 trm C.2.1.2.1
cl D dcd D.1.1.1.1 trm D.1.1.1.1
dcd D.1.1.4.2 trm D.1.1.4.2
dcd D.2.1.5.3 trm D.2.1.5.3
cl A dcd A.1.1.1.1 trm A.1.1.1.1
dcd A.1.1.1.2 trm A.1.1.1.2
cl B dcd B.1.1.1.1 trm B.1.1.1.1
dcd B.2.1.2.1 trm B.2.1.2.1
dcd B.2.2.3.1 trm B.2.2.3.1
cl C dcd C.1.1.1.3 trm C.1.1.1.3
dcd C.2.1.2.1 trm C.2.1.2.1
cl D dcd D.1.1.1.1 trm D.1.1.1.1
dcd D.1.1.4.2 trm D.1.1.4.2
dcd D.2.1.5.3 trm D.2.1.5.3

18 changes: 9 additions & 9 deletions tests/testthat/_snaps/listing_ael02.md
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# AEL02 listing is produced correctly

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tests/testthat/_snaps/listing_ael02.md#L1 

"correctly" can weaken meaning

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Expand All @@ -7,28 +7,28 @@

——————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————
Date of
Adverse First Study Study AE Most Caused by Action

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"Study" is repeated
Event MedDRA Drug Day of Duration Extreme Study Outcome Treatment Taken
Center/Patient ID Age/Sex/Race Treatment Preferred Term Administration Onset in Days Serious Intensity Drug (1) for AE (2)
——————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————
BRA-1/id-134 47/M/WHITE A: Drug X dcd B.2.1.2.1 04NOV2020 162 173 No MODERATE No 5 Yes 2
BRA-1/id-134 47/M/WHITE A: Drug X dcd B.2.1.2.1 04NOV2020 162 173 No MODERATE No 5 Yes 2
dcd D.1.1.4.2 04NOV2020 196 166 No MODERATE No 5 No 2
dcd A.1.1.1.2 04NOV2020 321 149 Yes MODERATE No 5 Yes 2
dcd A.1.1.1.2 04NOV2020 393 43 Yes MODERATE No 5 No 5
BRA-1/id-141 35/F/WHITE C: Combination dcd B.2.1.2.1 25JUL2020 387 11 No MODERATE No 3 Yes 1
BRA-1/id-141 35/F/WHITE C: Combination dcd B.2.1.2.1 25JUL2020 387 11 No MODERATE No 3 Yes 1
dcd D.2.1.5.3 25JUL2020 455 628 No MILD Yes 3 No 1
dcd A.1.1.1.1 25JUL2020 739 36 No MILD No 4 Yes 3
dcd A.1.1.1.2 25JUL2020 899 139 Yes MODERATE No 4 Yes 2
dcd A.1.1.1.1 25JUL2020 951 66 No MILD No 5 No 1
dcd D.1.1.1.1 25JUL2020 1093 3 Yes SEVERE Yes 1 No 6
BRA-1/id-236 32/M/BLACK OR AFRICAN AMERICAN B: Placebo dcd B.1.1.1.1 15JAN2021 33 614 Yes SEVERE Yes 1 No 6
BRA-1/id-236 32/M/BLACK OR AFRICAN AMERICAN B: Placebo dcd B.1.1.1.1 15JAN2021 33 614 Yes SEVERE Yes 1 No 6
dcd B.1.1.1.1 15JAN2021 271 775 Yes SEVERE Yes 1 Yes 6
dcd B.1.1.1.1 15JAN2021 1051 7 Yes SEVERE Yes 1 Yes 6
BRA-1/id-265 25/M/WHITE C: Combination dcd C.2.1.2.1 07OCT2019 84 78 No MODERATE Yes 2 Yes 5
BRA-1/id-265 25/M/WHITE C: Combination dcd C.2.1.2.1 07OCT2019 84 78 No MODERATE Yes 2 Yes 5
dcd D.1.1.4.2 07OCT2019 349 285 No MODERATE No 3 Yes 7
dcd D.1.1.1.1 07OCT2019 685 37 Yes SEVERE Yes 1 No 6
dcd C.1.1.1.3 07OCT2019 705 66 No SEVERE Yes 4 Yes 7
BRA-1/id-42 36/M/BLACK OR AFRICAN AMERICAN A: Drug X dcd C.2.1.2.1 01JAN2020 39 506 No MODERATE Yes 2 No 6
BRA-1/id-42 36/M/BLACK OR AFRICAN AMERICAN A: Drug X dcd C.2.1.2.1 01JAN2020 39 506 No MODERATE Yes 2 No 6
dcd D.1.1.1.1 01JAN2020 64 630 Yes SEVERE Yes 1 No 6
dcd C.2.1.2.1 01JAN2020 95 306 No MODERATE Yes 5 No 2
dcd A.1.1.1.2 01JAN2020 160 259 Yes MODERATE No 2 Yes 2
Expand All @@ -38,11 +38,11 @@
dcd A.1.1.1.2 01JAN2020 475 113 Yes MODERATE No 4 Yes 2
dcd C.1.1.1.3 01JAN2020 496 162 No SEVERE Yes 5 Yes 2
dcd B.1.1.1.1 01JAN2020 641 15 Yes SEVERE Yes 1 Yes 6
BRA-1/id-65 25/F/BLACK OR AFRICAN AMERICAN B: Placebo dcd C.2.1.2.1 15JUL2019 217 359 No MODERATE Yes 2 Yes 2
BRA-1/id-65 25/F/BLACK OR AFRICAN AMERICAN B: Placebo dcd C.2.1.2.1 15JUL2019 217 359 No MODERATE Yes 2 Yes 2
dcd D.2.1.5.3 15JUL2019 286 174 No MILD Yes 3 Yes 2
dcd B.1.1.1.1 15JUL2019 349 441 Yes SEVERE Yes 1 No 6
dcd C.1.1.1.3 15JUL2019 696 7 No SEVERE Yes 6 No 3
BRA-1/id-93 34/F/ASIAN A: Drug X dcd D.1.1.4.2 20JUN2020 44 47 No MODERATE No 5 Yes 2
BRA-1/id-93 34/F/ASIAN A: Drug X dcd D.1.1.4.2 20JUN2020 44 47 No MODERATE No 5 Yes 2
dcd D.2.1.5.3 20JUN2020 79 300 No MILD Yes 5 No 3
dcd A.1.1.1.1 20JUN2020 136 78 No MILD No 3 Yes 2
dcd D.2.1.5.3 20JUN2020 260 305 No MILD Yes 5 No 2
Expand All @@ -51,10 +51,10 @@
dcd B.1.1.1.1 20JUN2020 523 24 Yes SEVERE Yes 1 No 6
dcd D.2.1.5.3 20JUN2020 566 40 No MILD Yes 6 No 3
dcd B.2.2.3.1 20JUN2020 596 10 Yes MILD No 3 Yes 2
BRA-11/id-237 64/F/ASIAN C: Combination dcd D.2.1.5.3 10MAR2020 157 564 No MILD Yes 3 No 6
BRA-11/id-237 64/F/ASIAN C: Combination dcd D.2.1.5.3 10MAR2020 157 564 No MILD Yes 3 No 6
dcd C.1.1.1.3 10MAR2020 340 239 No SEVERE Yes 4 No 5
dcd B.2.1.2.1 10MAR2020 1068 13 No MODERATE No 3 No 3
BRA-11/id-321 33/F/ASIAN C: Combination dcd A.1.1.1.1 06OCT2020 37 129 No MILD No 5 No 2
BRA-11/id-321 33/F/ASIAN C: Combination dcd A.1.1.1.1 06OCT2020 37 129 No MILD No 5 No 2
dcd A.1.1.1.1 06OCT2020 320 481 No MILD No 5 No 2
dcd C.2.1.2.1 06OCT2020 406 394 No MODERATE Yes 4 No 2
dcd A.1.1.1.2 06OCT2020 427 335 Yes MODERATE No 4 No 6
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