From 7e1adb78bfc33bb497cab2f697b347553bd15968 Mon Sep 17 00:00:00 2001
From: Abinaya Yogasekaram <73252787+ayogasekaram@users.noreply.github.com>
Date: Mon, 30 Sep 2024 10:36:07 -0400
Subject: [PATCH 1/2] 1315 var labels odds ratio@main (#1317)

closes #1315

---------

Co-authored-by: 27856297+dependabot-preview[bot]@users.noreply.github.com <27856297+dependabot-preview[bot]@users.noreply.github.com>
---
 R/odds_ratio.R       | 2 ++
 man/odds_ratio.Rd    | 3 +++
 man/try_car_anova.Rd | 4 ++--
 3 files changed, 7 insertions(+), 2 deletions(-)

diff --git a/R/odds_ratio.R b/R/odds_ratio.R
index 2f4a38d2fe..eccdccc1b1 100644
--- a/R/odds_ratio.R
+++ b/R/odds_ratio.R
@@ -196,6 +196,7 @@ estimate_odds_ratio <- function(lyt,
                                 ...,
                                 show_labels = "hidden",
                                 table_names = vars,
+                                var_labels = vars,
                                 .stats = "or_ci",
                                 .formats = NULL,
                                 .labels = NULL,
@@ -214,6 +215,7 @@ estimate_odds_ratio <- function(lyt,
     lyt,
     vars,
     afun = afun,
+    var_labels = var_labels,
     na_str = na_str,
     nested = nested,
     extra_args = extra_args,
diff --git a/man/odds_ratio.Rd b/man/odds_ratio.Rd
index 478a18c562..ee88612e3b 100644
--- a/man/odds_ratio.Rd
+++ b/man/odds_ratio.Rd
@@ -18,6 +18,7 @@ estimate_odds_ratio(
   ...,
   show_labels = "hidden",
   table_names = vars,
+  var_labels = vars,
   .stats = "or_ci",
   .formats = NULL,
   .labels = NULL,
@@ -71,6 +72,8 @@ underneath analyses, which is not allowed.}
 \item{table_names}{(\code{character})\cr this can be customized in the case that the same \code{vars} are analyzed multiple
 times, to avoid warnings from \code{rtables}.}
 
+\item{var_labels}{(\code{character})\cr variable labels.}
+
 \item{.stats}{(\code{character})\cr statistics to select for the table. Run \code{get_stats("estimate_odds_ratio")}
 to see available statistics for this function.}
 
diff --git a/man/try_car_anova.Rd b/man/try_car_anova.Rd
index a81cde8287..b3ba87bf83 100644
--- a/man/try_car_anova.Rd
+++ b/man/try_car_anova.Rd
@@ -9,12 +9,12 @@ try_car_anova(mod, test.statistic)
 \arguments{
 \item{mod}{\code{lm}, \code{aov}, \code{glm}, \code{multinom}, \code{polr}
     \code{mlm}, \code{coxph}, \code{coxme}, \code{lme}, \code{mer}, \code{merMod}, \code{svyglm}, \code{svycoxph},
-    \code{rlm}, or other suitable model object.}
+    \code{rlm}, \code{clm}, \code{clmm}, or other suitable model object.}
 
 \item{test.statistic}{for a generalized linear model, whether to calculate
     \code{"LR"} (likelihood-ratio), \code{"Wald"}, or \code{"F"} tests; for a Cox
     or Cox mixed-effects model, whether to calculate \code{"LR"} (partial-likelihood ratio) or
-    \code{"Wald"} tests; in the default case or for linear mixed models fit by
+    \code{"Wald"} tests (with \code{"LR"} tests unavailable for Cox models using the \code{tt} argument); in the default case or for linear mixed models fit by
     \code{lmer}, whether to calculate Wald \code{"Chisq"} or Kenward-Roger
     \code{"F"} tests with Satterthwaite degrees of freedom (\emph{warning:} the KR F-tests
     can be very time-consuming).

From 2b17efe411c35cb79df066b26ae7e38d5484cadc Mon Sep 17 00:00:00 2001
From: ayogasekaram <ayogasekaram@users.noreply.github.com>
Date: Mon, 30 Sep 2024 14:37:55 +0000
Subject: [PATCH 2/2] [skip actions] Bump version to 0.9.6.9001

---
 DESCRIPTION | 4 ++--
 NEWS.md     | 2 +-
 2 files changed, 3 insertions(+), 3 deletions(-)

diff --git a/DESCRIPTION b/DESCRIPTION
index 2399084cfb..9982eb400e 100644
--- a/DESCRIPTION
+++ b/DESCRIPTION
@@ -1,7 +1,7 @@
 Package: tern
 Title: Create Common TLGs Used in Clinical Trials
-Version: 0.9.6.9000
-Date: 2024-09-24
+Version: 0.9.6.9001
+Date: 2024-09-30
 Authors@R: c(
     person("Joe", "Zhu", , "joe.zhu@roche.com", role = c("aut", "cre")),
     person("Daniel", "Sabanés Bové", , "daniel.sabanes_bove@roche.com", role = "aut"),
diff --git a/NEWS.md b/NEWS.md
index e9e60b8cf9..348897d002 100644
--- a/NEWS.md
+++ b/NEWS.md
@@ -1,4 +1,4 @@
-# tern 0.9.6.9000
+# tern 0.9.6.9001
 
 # tern 0.9.6