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prep for rspm release 0.9.6, [skip vbump] #1311

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merged 9 commits into from
Sep 24, 2024
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prep for rspm release 0.9.6, [skip vbump] #1311

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9f0e159
prep for rspm release 0.9.6, [skip vbump]
shajoezhu Sep 18, 2024
691440a
Merge branch 'main' into 1310_rspm
shajoezhu Sep 20, 2024
4091934
Merge branch 'main' into 1310_rspm
shajoezhu Sep 20, 2024
5838eb2
update url
shajoezhu Sep 23, 2024
588ca49
Merge branch '1310_rspm' of github.com:insightsengineering/tern into …
shajoezhu Sep 23, 2024
bb59b61
update docs
shajoezhu Sep 23, 2024
21c9977
fix lintr
shajoezhu Sep 23, 2024
8fb5968
Fix n_events bug
edelarua Sep 23, 2024
cb513d9
Update n_events check
edelarua Sep 23, 2024
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4 changes: 2 additions & 2 deletions DESCRIPTION
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Original file line number Diff line number Diff line change
@@ -1,6 +1,6 @@
Package: tern
Title: Create Common TLGs Used in Clinical Trials
Version: 0.9.5.9025
Version: 0.9.6
Date: 2024-09-17
Authors@R: c(
person("Joe", "Zhu", , "joe.zhu@roche.com", role = c("aut", "cre")),
Expand Down Expand Up @@ -34,7 +34,7 @@ Imports:
dplyr (>= 1.0.0),
emmeans (>= 1.10.4),
forcats (>= 1.0.0),
formatters (>= 0.5.9),
formatters (>= 0.5.8),
ggplot2 (>= 3.5.0),
grid,
gridExtra (>= 2.0.0),
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8 changes: 4 additions & 4 deletions NEWS.md
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@@ -1,17 +1,17 @@
# tern 0.9.5.9025
# tern 0.9.6
### Enhancements
* Added `errorbar_width` and `linetype` parameters to `g_lineplot`.
* Reworking of `summarize_glm_count()` documentation and all its associated functions to better describe the results and the functions' purpose.
* Added the `.formats` argument to `tabulate_rsp_subgroups` and `tabulate_survival_subgroups` to allow users to specify formats.
* Added the `riskdiff` argument to `tabulate_rsp_subgroups` and `tabulate_survival_subgroups` to allow users to add a risk difference table column, and function `control_riskdiff` to specify settings for the risk difference column.
* Added warning to `tabulate_rsp_subgroups` when `pval` statistic is selected but `df` has not been correctly generated to add p-values to the output table.
* Added `n_rate` statistic as a non-default option to `estimate_incidence_rate` which returns both number of events observed and estimated incidence rate.
* Added `fraction` statistic to the `analyze_var_count` method group.
* Improved `summarize_glm_count()` documentation and all its associated functions to better describe the results and the functions' purpose.

### Bug Fixes
* Fixed a bug in `a_surv_time` that threw an error when split only has `"is_event"`.
* Added defaults for `d_count_cumulative` parameters as described in the documentation.
* Empty levels on `g_lineplot` x-axis are not shown in either plots.
* Fixed a bug of empty levels on `g_lineplot` x-axis were not shown in either plots.
* Fixed a bug in `a_surv_time` that threw an error when split only has `"is_event"`.
* Fixed disappearing line in `g_lineplot` when using only one group or strata level.
* Fixed defaults for formats and labels in `get_formats_from_stats` and `get_labels_from_stats`.
* Fixed bug for linear scaling factor (`scale` parameter) being applied to response but not to rate in `h_glm_count` while all distributions have logarithmic link function.
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