Add method argument to s_odds_ratio() and estimate_odds_ratio()
#429
29 errors, 3 skipped, 820 pass in 1m 26s
1 files 83 suites 1m 26s ⏱️
852 tests 820 ✅ 3 💤 0 ❌ 29 🔥
2 243 runs 2 190 ✅ 24 💤 0 ❌ 29 🔥
Results for commit a32387b.
Annotations
Check failure on line 0 in character(0)
github-actions / Unit Tests Summary
_unnamed_ (character(0)) with error
tern.Rcheck/tests/testthat/junit-result.xml [took 0s]
Raw output
Error in `y$or_ci$est`: $ operator is invalid for atomic vectors ('test-g_forest.R:12:1')
Error in `y$or_ci$est`: $ operator is invalid for atomic vectors
Backtrace:
▆
1. └─tern::extract_rsp_subgroups(...) at test-g_forest.R:12:1
2. └─tern::h_odds_ratio_subgroups_df(...)
3. └─tern::h_odds_ratio_df(...)
4. └─tern::s_odds_ratio(...)
Check failure on line 0 in h_response_subgroups
github-actions / Unit Tests Summary
h_odds_ratio_df_functions_as_expected_with_valid_input_and_default_arguments (h_response_subgroups) with error
tern.Rcheck/tests/testthat/junit-result.xml [took 0s]
Raw output
Error in `y$or_ci$est`: $ operator is invalid for atomic vectors ('test-h_response_subgroups.R:102:3')
Error in `y$or_ci$est`: $ operator is invalid for atomic vectors
Backtrace:
x
1. \-tern::h_odds_ratio_df(...) at test-h_response_subgroups.R:102:3
2. \-tern::s_odds_ratio(...)
Check failure on line 0 in h_response_subgroups
github-actions / Unit Tests Summary
h_odds_ratio_df_functions_as_expected_with_valid_input_and_non_default_arguments (h_response_subgroups) with error
tern.Rcheck/tests/testthat/junit-result.xml [took 0s]
Raw output
Error in `y$or_ci$est`: $ operator is invalid for atomic vectors ('test-h_response_subgroups.R:114:3')
Error in `y$or_ci$est`: $ operator is invalid for atomic vectors
Backtrace:
x
1. \-tern::h_odds_ratio_df(...) at test-h_response_subgroups.R:114:3
2. \-tern::s_odds_ratio(...)
Check failure on line 0 in h_response_subgroups
github-actions / Unit Tests Summary
h_odds_ratio_df_functions_as_expected_with_strata (h_response_subgroups) with error
tern.Rcheck/tests/testthat/junit-result.xml [took 0s]
Raw output
Error in `y$or_ci$est`: $ operator is invalid for atomic vectors ('test-h_response_subgroups.R:129:3')
Error in `y$or_ci$est`: $ operator is invalid for atomic vectors
Backtrace:
x
1. +-withr::with_options(...) at test-h_response_subgroups.R:129:3
2. | \-base::force(code)
3. \-tern::h_odds_ratio_df(...)
4. \-tern::s_odds_ratio(...)
Check failure on line 0 in h_response_subgroups
github-actions / Unit Tests Summary
h_odds_ratio_subgroups_df_functions_as_expected_with_valid_input_and_default_arguments (h_response_subgroups) with error
tern.Rcheck/tests/testthat/junit-result.xml [took 0s]
Raw output
Error in `y$or_ci$est`: $ operator is invalid for atomic vectors ('test-h_response_subgroups.R:161:3')
Error in `y$or_ci$est`: $ operator is invalid for atomic vectors
Backtrace:
x
1. \-tern::h_odds_ratio_subgroups_df(...) at test-h_response_subgroups.R:161:3
2. \-tern::h_odds_ratio_df(...)
3. \-tern::s_odds_ratio(...)
Check failure on line 0 in h_response_subgroups
github-actions / Unit Tests Summary
h_odds_ratio_subgroups_df_functions_as_expected_when_subgroups_is_NULL. (h_response_subgroups) with error
tern.Rcheck/tests/testthat/junit-result.xml [took 0s]
Raw output
Error in `y$or_ci$est`: $ operator is invalid for atomic vectors ('test-h_response_subgroups.R:173:3')
Error in `y$or_ci$est`: $ operator is invalid for atomic vectors
Backtrace:
x
1. \-tern::h_odds_ratio_subgroups_df(...) at test-h_response_subgroups.R:173:3
2. \-tern::h_odds_ratio_df(...)
3. \-tern::s_odds_ratio(...)
Check failure on line 0 in h_response_subgroups
github-actions / Unit Tests Summary
h_odds_ratio_subgroups_df_functions_as_expected_with_strata (h_response_subgroups) with error
tern.Rcheck/tests/testthat/junit-result.xml [took 0s]
Raw output
Error in `y$or_ci$est`: $ operator is invalid for atomic vectors ('test-h_response_subgroups.R:186:3')
Error in `y$or_ci$est`: $ operator is invalid for atomic vectors
Backtrace:
x
1. +-withr::with_options(...) at test-h_response_subgroups.R:186:3
2. | \-base::force(code)
3. \-tern::h_odds_ratio_subgroups_df(...)
4. \-tern::h_odds_ratio_df(...)
5. \-tern::s_odds_ratio(...)
Check failure on line 0 in h_response_subgroups
github-actions / Unit Tests Summary
h_odds_ratio_subgroups_df_works_as_expected_with_groups_lists (h_response_subgroups) with error
tern.Rcheck/tests/testthat/junit-result.xml [took 0s]
Raw output
Error in `y$or_ci$est`: $ operator is invalid for atomic vectors ('test-h_response_subgroups.R:207:3')
Error in `y$or_ci$est`: $ operator is invalid for atomic vectors
Backtrace:
x
1. \-tern::h_odds_ratio_subgroups_df(...) at test-h_response_subgroups.R:207:3
2. \-tern::h_odds_ratio_df(...)
3. \-tern::s_odds_ratio(...)
Check failure on line 0 in odds_ratio
github-actions / Unit Tests Summary
s_odds_ratio_estimates_right_OR_and_CI_unstratified_analysis_ (odds_ratio) with error
tern.Rcheck/tests/testthat/junit-result.xml [took 0s]
Raw output
Error in `y$or_ci$est`: $ operator is invalid for atomic vectors ('test-odds_ratio.R:46:3')
Error in `y$or_ci$est`: $ operator is invalid for atomic vectors
Backtrace:
x
1. \-tern::s_odds_ratio(...) at test-odds_ratio.R:46:3
Check failure on line 0 in odds_ratio
github-actions / Unit Tests Summary
s_odds_ratio_estimates_right_OR_and_CI_stratified_analysis_ (odds_ratio) with error
tern.Rcheck/tests/testthat/junit-result.xml [took 0s]
Raw output
Error in `y$or_ci$est`: $ operator is invalid for atomic vectors ('test-odds_ratio.R:65:3')
Error in `y$or_ci$est`: $ operator is invalid for atomic vectors
Backtrace:
x
1. \-tern::s_odds_ratio(...) at test-odds_ratio.R:65:3
Check failure on line 0 in odds_ratio
github-actions / Unit Tests Summary
estimate_odds_ratio_estimates_right_OR_and_CI_unstratified_analysis_ (odds_ratio) with error
tern.Rcheck/tests/testthat/junit-result.xml [took 0s]
Raw output
Error: Error applying analysis function (var - rsp): $ operator is invalid for atomic vectors ('test-odds_ratio.R:106:3')
Error: Error applying analysis function (var - rsp): $ operator is invalid for atomic vectors
occured at (row) path: root
Backtrace:
x
1. +-... %>% build_table(df = data) at test-odds_ratio.R:106:3
2. \-rtables::build_table(., df = data)
3. \-base::lapply(...)
4. \-rtables (local) FUN(X[[i]], ...)
5. \-rtables:::recursive_applysplit(...)
6. +-rtables:::.make_split_kids(...)
7. \-rtables:::.make_split_kids(...)
8. \-rtables (local) .local(spl, have_controws, make_lrow, ...)
9. \-rtables:::.make_analyzed_tab(...)
Check failure on line 0 in odds_ratio
github-actions / Unit Tests Summary
estimate_odds_ratio_estimates_right_OR_and_CI_stratified_analysis_ (odds_ratio) with error
tern.Rcheck/tests/testthat/junit-result.xml [took 0s]
Raw output
Error: Error applying analysis function (var - rsp): $ operator is invalid for atomic vectors ('test-odds_ratio.R:123:3')
Error: Error applying analysis function (var - rsp): $ operator is invalid for atomic vectors
occured at (row) path: root
Backtrace:
x
1. +-... %>% build_table(df = data) at test-odds_ratio.R:123:3
2. \-rtables::build_table(., df = data)
3. \-base::lapply(...)
4. \-rtables (local) FUN(X[[i]], ...)
5. \-rtables:::recursive_applysplit(...)
6. +-rtables:::.make_split_kids(...)
7. \-rtables:::.make_split_kids(...)
8. \-rtables (local) .local(spl, have_controws, make_lrow, ...)
9. \-rtables:::.make_analyzed_tab(...)
Check failure on line 0 in odds_ratio
github-actions / Unit Tests Summary
estimate_odds_ratio_works_with_strata_and_combined_groups (odds_ratio) with error
tern.Rcheck/tests/testthat/junit-result.xml [took 0s]
Raw output
Error: Error applying analysis function (var - rsp): $ operator is invalid for atomic vectors ('test-odds_ratio.R:157:3')
Error: Error applying analysis function (var - rsp): $ operator is invalid for atomic vectors
occured at (row) path: root
Backtrace:
x
1. \-rtables::build_table(lyt = lyt, df = anl) at test-odds_ratio.R:157:3
2. \-base::lapply(...)
3. \-rtables (local) FUN(X[[i]], ...)
4. \-rtables:::recursive_applysplit(...)
5. +-rtables:::.make_split_kids(...)
6. \-rtables:::.make_split_kids(...)
7. \-rtables (local) .local(spl, have_controws, make_lrow, ...)
8. \-rtables:::.make_analyzed_tab(...)
Check failure on line 0 in odds_ratio
github-actions / Unit Tests Summary
s_odds_ratio_method_argument_works (odds_ratio) with error
tern.Rcheck/tests/testthat/junit-result.xml [took 0s]
Raw output
Error in `y$or_ci$est`: $ operator is invalid for atomic vectors ('test-odds_ratio.R:174:3')
Error in `y$or_ci$est`: $ operator is invalid for atomic vectors
Backtrace:
x
1. \-tern::s_odds_ratio(...) at test-odds_ratio.R:174:3
Check failure on line 0 in odds_ratio
github-actions / Unit Tests Summary
estimate_odds_ratio_method_argument_works (odds_ratio) with error
tern.Rcheck/tests/testthat/junit-result.xml [took 0s]
Raw output
Error: Error applying analysis function (var - rsp): $ operator is invalid for atomic vectors ('test-odds_ratio.R:203:3')
Error: Error applying analysis function (var - rsp): $ operator is invalid for atomic vectors
occured at (row) path: root
Backtrace:
x
1. \-rtables::build_table(lyt, df = dta) at test-odds_ratio.R:203:3
2. \-base::lapply(...)
3. \-rtables (local) FUN(X[[i]], ...)
4. \-rtables:::recursive_applysplit(...)
5. +-rtables:::.make_split_kids(...)
6. \-rtables:::.make_split_kids(...)
7. \-rtables (local) .local(spl, have_controws, make_lrow, ...)
8. \-rtables:::.make_analyzed_tab(...)
Check failure on line 0 in response_subgroups
github-actions / Unit Tests Summary
extract_rsp_subgroups_functions_as_expected_with_valid_input_and_default_arguments (response_subgroups) with error
tern.Rcheck/tests/testthat/junit-result.xml [took 0s]
Raw output
Error in `y$or_ci$est`: $ operator is invalid for atomic vectors ('test-response_subgroups.R:24:3')
Error in `y$or_ci$est`: $ operator is invalid for atomic vectors
Backtrace:
x
1. \-tern::extract_rsp_subgroups(...) at test-response_subgroups.R:24:3
2. \-tern::h_odds_ratio_subgroups_df(...)
3. \-tern::h_odds_ratio_df(...)
4. \-tern::s_odds_ratio(...)
Check failure on line 0 in response_subgroups
github-actions / Unit Tests Summary
extract_rsp_subgroups_functions_as_expected_with_NULL_subgroups (response_subgroups) with error
tern.Rcheck/tests/testthat/junit-result.xml [took 0s]
Raw output
Error in `y$or_ci$est`: $ operator is invalid for atomic vectors ('test-response_subgroups.R:36:3')
Error in `y$or_ci$est`: $ operator is invalid for atomic vectors
Backtrace:
x
1. \-tern::extract_rsp_subgroups(...) at test-response_subgroups.R:36:3
2. \-tern::h_odds_ratio_subgroups_df(...)
3. \-tern::h_odds_ratio_df(...)
4. \-tern::s_odds_ratio(...)
Check failure on line 0 in response_subgroups
github-actions / Unit Tests Summary
extract_rsp_subgroups_works_as_expected_with_groups_lists (response_subgroups) with error
tern.Rcheck/tests/testthat/junit-result.xml [took 0s]
Raw output
Error in `y$or_ci$est`: $ operator is invalid for atomic vectors ('test-response_subgroups.R:48:3')
Error in `y$or_ci$est`: $ operator is invalid for atomic vectors
Backtrace:
x
1. \-tern::extract_rsp_subgroups(...) at test-response_subgroups.R:48:3
2. \-tern::h_odds_ratio_subgroups_df(...)
3. \-tern::h_odds_ratio_df(...)
4. \-tern::s_odds_ratio(...)
Check failure on line 0 in response_subgroups
github-actions / Unit Tests Summary
extract_rsp_subgroups_functions_as_expected_with_strata (response_subgroups) with error
tern.Rcheck/tests/testthat/junit-result.xml [took 0s]
Raw output
Error in `y$or_ci$est`: $ operator is invalid for atomic vectors ('test-response_subgroups.R:73:3')
Error in `y$or_ci$est`: $ operator is invalid for atomic vectors
Backtrace:
x
1. +-withr::with_options(...) at test-response_subgroups.R:73:3
2. | \-base::force(code)
3. \-tern::extract_rsp_subgroups(...)
4. \-tern::h_odds_ratio_subgroups_df(...)
5. \-tern::h_odds_ratio_df(...)
6. \-tern::s_odds_ratio(...)
Check failure on line 0 in response_subgroups
github-actions / Unit Tests Summary
tabulate_rsp_subgroups_functions_as_expected_with_valid_input (response_subgroups) with error
tern.Rcheck/tests/testthat/junit-result.xml [took 0s]
Raw output
Error in `y$or_ci$est`: $ operator is invalid for atomic vectors ('test-response_subgroups.R:110:3')
Error in `y$or_ci$est`: $ operator is invalid for atomic vectors
Backtrace:
x
1. \-tern::extract_rsp_subgroups(...) at test-response_subgroups.R:110:3
2. \-tern::h_odds_ratio_subgroups_df(...)
3. \-tern::h_odds_ratio_df(...)
4. \-tern::s_odds_ratio(...)
Check failure on line 0 in response_subgroups
github-actions / Unit Tests Summary
tabulate_rsp_subgroups_correctly_calculates_column_indices (response_subgroups) with error
tern.Rcheck/tests/testthat/junit-result.xml [took 0s]
Raw output
Error in `y$or_ci$est`: $ operator is invalid for atomic vectors ('test-response_subgroups.R:130:3')
Error in `y$or_ci$est`: $ operator is invalid for atomic vectors
Backtrace:
x
1. \-tern::extract_rsp_subgroups(...) at test-response_subgroups.R:130:3
2. \-tern::h_odds_ratio_subgroups_df(...)
3. \-tern::h_odds_ratio_df(...)
4. \-tern::s_odds_ratio(...)
Check failure on line 0 in response_subgroups
github-actions / Unit Tests Summary
tabulate_rsp_subgroups_functions_as_expected_with_valid_input_extreme_values_in_OR_table (response_subgroups) with error
tern.Rcheck/tests/testthat/junit-result.xml [took 0s]
Raw output
Error in `y$or_ci$est`: $ operator is invalid for atomic vectors ('test-response_subgroups.R:177:3')
Error in `y$or_ci$est`: $ operator is invalid for atomic vectors
Backtrace:
x
1. \-tern::extract_rsp_subgroups(...) at test-response_subgroups.R:177:3
2. \-tern::h_odds_ratio_subgroups_df(...)
3. \-tern::h_odds_ratio_df(...)
4. \-tern::s_odds_ratio(...)
Check failure on line 0 in response_subgroups
github-actions / Unit Tests Summary
tabulate_rsp_subgroups_functions_as_expected_with_NULL_subgroups (response_subgroups) with error
tern.Rcheck/tests/testthat/junit-result.xml [took 0s]
Raw output
Error in `y$or_ci$est`: $ operator is invalid for atomic vectors ('test-response_subgroups.R:193:3')
Error in `y$or_ci$est`: $ operator is invalid for atomic vectors
Backtrace:
x
1. \-tern::extract_rsp_subgroups(...) at test-response_subgroups.R:193:3
2. \-tern::h_odds_ratio_subgroups_df(...)
3. \-tern::h_odds_ratio_df(...)
4. \-tern::s_odds_ratio(...)
Check failure on line 0 in response_subgroups
github-actions / Unit Tests Summary
tabulate_rsp_subgroups_functions_as_expected_when_0_obs_in_one_arm (response_subgroups) with error
tern.Rcheck/tests/testthat/junit-result.xml [took 0s]
Raw output
Error in `y$or_ci$est`: $ operator is invalid for atomic vectors ('test-response_subgroups.R:213:3')
Error in `y$or_ci$est`: $ operator is invalid for atomic vectors
Backtrace:
x
1. +-base::suppressWarnings(...) at test-response_subgroups.R:213:3
2. | \-base::withCallingHandlers(...)
3. +-testthat::expect_warning(...)
4. | \-testthat:::expect_condition_matching(...)
5. | \-testthat:::quasi_capture(...)
6. | +-testthat (local) .capture(...)
7. | | \-base::withCallingHandlers(...)
8. | \-rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
9. \-tern::extract_rsp_subgroups(...)
10. \-tern::h_odds_ratio_subgroups_df(...)
11. \-tern::h_odds_ratio_df(...)
12. \-tern::s_odds_ratio(...)
Check failure on line 0 in response_subgroups
github-actions / Unit Tests Summary
tabulate_rsp_subgroups_.formats_argument_works_as_expected (response_subgroups) with error
tern.Rcheck/tests/testthat/junit-result.xml [took 0s]
Raw output
Error in `y$or_ci$est`: $ operator is invalid for atomic vectors ('test-response_subgroups.R:246:3')
Error in `y$or_ci$est`: $ operator is invalid for atomic vectors
Backtrace:
x
1. \-tern::extract_rsp_subgroups(...) at test-response_subgroups.R:246:3
2. \-tern::h_odds_ratio_subgroups_df(...)
3. \-tern::h_odds_ratio_df(...)
4. \-tern::s_odds_ratio(...)