-
Notifications
You must be signed in to change notification settings - Fork 0
/
Copy pathannotation.yaml
95 lines (73 loc) · 2.55 KB
/
annotation.yaml
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
- position_score: hg38/scores/phyloP100way
- position_score: hg38/scores/phyloP30way
- position_score: hg38/scores/phyloP20way
- position_score: hg38/scores/phyloP7way
- position_score: hg38/scores/phastCons100way
- position_score: hg38/scores/phastCons30way
- position_score: hg38/scores/phastCons20way
- position_score: hg38/scores/phastCons7way
- np_score: hg38/scores/CADD_v1.4
- liftover_annotator:
chain: liftover/hg38ToHg19
target_genome: hg19/genomes/GATK_ResourceBundle_5777_b37_phiX174
attributes:
- source: liftover_annotatable
name: hg19_annotatable
internal: true
- position_score:
resource_id: hg19/scores/FitCons-i6-merged
input_annotatable: hg19_annotatable
- position_score:
resource_id: hg19/scores/Linsight
input_annotatable: hg19_annotatable
- position_score:
resource_id: hg19/scores/FitCons2_E067
input_annotatable: hg19_annotatable
- position_score:
resource_id: hg19/scores/FitCons2_E068
input_annotatable: hg19_annotatable
- position_score:
resource_id: hg19/scores/FitCons2_E069
input_annotatable: hg19_annotatable
- position_score:
resource_id: hg19/scores/FitCons2_E070
input_annotatable: hg19_annotatable
- position_score:
resource_id: hg19/scores/FitCons2_E071
input_annotatable: hg19_annotatable
- position_score:
resource_id: hg19/scores/FitCons2_E072
input_annotatable: hg19_annotatable
- position_score:
resource_id: hg19/scores/FitCons2_E073
input_annotatable: hg19_annotatable
- position_score:
resource_id: hg19/scores/FitCons2_E074
input_annotatable: hg19_annotatable
- position_score:
resource_id: hg19/scores/FitCons2_E081
input_annotatable: hg19_annotatable
- position_score:
resource_id: hg19/scores/FitCons2_E082
input_annotatable: hg19_annotatable
- np_score:
resource_id: hg19/scores/MPC
input_annotatable: hg19_annotatable
- normalize_allele_annotator:
genome: hg38/genomes/GRCh38-hg38
- allele_score:
resource_id: hg38/variant_frequencies/SSC_WG38_CSHL_2380
region_length_cutoff: 100
# input_annotatable: normalized_allele
- allele_score:
resource_id: hg38/variant_frequencies/gnomAD_v2.1.1_liftover/exomes
region_length_cutoff: 100
input_annotatable: normalized_allele
- allele_score:
resource_id: hg38/variant_frequencies/gnomAD_v2.1.1_liftover/genomes
region_length_cutoff: 100
input_annotatable: normalized_allele
- allele_score:
resource_id: hg38/variant_frequencies/gnomAD_v3/genomes
region_length_cutoff: 100
input_annotatable: normalized_allele