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Revisions

  • update hardware/OS requirements, add test run on ENA data

    @martinghunt martinghunt committed Nov 4, 2024
    1555f40
  • add that bed file can be used

    @martinghunt martinghunt committed Aug 23, 2024
    4c90419
  • viridian_workflow renamed to just viridian

    @martinghunt martinghunt committed Apr 30, 2024
    8392d96
  • add more download and run explanation

    @martinghunt martinghunt committed Mar 20, 2024
    1bc0ee3
  • typo

    @martinghunt martinghunt committed Mar 20, 2024
    18c734f
  • formatting

    @martinghunt martinghunt committed Mar 20, 2024
    b02c93d
  • add note on ARM container

    @martinghunt martinghunt committed Mar 20, 2024
    2eed8a5
  • update ena reads options

    @martinghunt martinghunt committed Mar 19, 2024
    a00fd72
  • main script is viridian, not viridian_workflow

    @martinghunt martinghunt committed Mar 18, 2024
    4208493
  • typos in msa description

    @martinghunt martinghunt committed Jan 26, 2024
    30d7c18
  • fix typo

    @martinghunt martinghunt committed Jan 8, 2024
    cd8d6d5
  • fix indentation

    @martinghunt martinghunt committed Jan 8, 2024
    12773d0
  • link to plots page

    @martinghunt martinghunt committed Jan 3, 2024
    31ceafd
  • New plots page

    @martinghunt martinghunt committed Jan 3, 2024
    19297f9
  • link to QC tsv file

    @martinghunt martinghunt committed Jan 3, 2024
    f66d5d5
  • typo

    @martinghunt martinghunt committed Jan 3, 2024
    aa99cd7
  • First version QC tsv page

    @martinghunt martinghunt committed Jan 3, 2024
    d4d3929
  • Destroyed Workflow usage instructions (markdown)

    @martinghunt martinghunt committed Jan 3, 2024
    9a9a3c8
  • typos in commands

    @martinghunt martinghunt committed Jan 3, 2024
    00b47e2
  • Add link to qc TSV page

    @martinghunt martinghunt committed Jan 3, 2024
    d2dcde4
  • Placeholder for QC TSV file

    @martinghunt martinghunt committed Jan 3, 2024
    d72aac5
  • Tweak decontam section

    @martinghunt martinghunt committed Jan 3, 2024
    a18da89
  • consensus fasta has masked sequence

    @martinghunt martinghunt committed Jan 3, 2024
    936b561
  • Write sequences section

    @martinghunt martinghunt committed Jan 3, 2024
    a0f6b39
  • Write self qc section

    @martinghunt martinghunt committed Jan 3, 2024
    bc79776
  • Write amplicons section

    @martinghunt martinghunt committed Jan 3, 2024
    7e70aca
  • Write scheme_choice section

    @martinghunt martinghunt committed Jan 3, 2024
    501a036
  • Write amplicon scheme name section

    @martinghunt martinghunt committed Jan 3, 2024
    5096c39
  • Write read depth section

    @martinghunt martinghunt committed Jan 3, 2024
    5dd2e20
  • Write reads section

    @martinghunt martinghunt committed Jan 3, 2024
    62becd0