Releases: iqtree/piqtree2
Releases · iqtree/piqtree2
v0.3.1
v0.3.0
Contributors
- @rmcar17 Added new classes to enhance model specification when calling
build_tree
andfit_tree
. - @thomaskf fixed a bug in IQ-TREE resulting in segmentation faults on some invalid arguments.
ENH
build_tree
andfit_tree
now allow specifying base frequencies, invariable sites and rate heterogeneity options.
BUG
- Fixed a segmentation fault on repetitive calls to IQ-TREE with particular arguments.
What's Changed
- Bump iqtree2 from
b73ea6c
to5725858
by @dependabot in #38 - ENH: add freq rate type including rate het by @rmcar17 in #39
Full Changelog: 0.2.0...v0.3.0
0.2.0
Contributors
-
Richard Morris
-
Robert McArthur
ENH
build_tree
andfit_tree
now use enums for the substitution model.
BUG
- Fixed an issue where calling
build_tree
orfit_tree
twice, then another function with invalid input resulted in a segmentation fault.
DOC
- Implement scriv as a tool to manage collection of changes, and automated collation into the changelog
v0.1.0
The first official release of piqtree2!
piqtree2 allows you to use IQ-TREE for phylogenetic analysis directly from python.
Currently, we support phylogenetic reconstruction, fitting branch lengths to a fixed topology, generating random tress, and pairwise RF distance of trees.
piqtree2 is still in early pre-alpha development, please raise an issue if you encounter any problems or have any feature requests.
What's Changed
- Build container workflow by @khiron in #8
- disable container build for now by @khiron in #9
- Python API for piqtree2 by @khiron in #10
- ENH: define cogent3 apps and add test stub by @GavinHuttley in #15
- ENH: added available_models() convenience function by @GavinHuttley in #18
- Bump actions/checkout from 2 to 4 by @dependabot in #20
- Bump pypa/cibuildwheel from 2.19.1 to 2.19.2 by @dependabot in #19
New Contributors
- @khiron made their first contribution in #8
- @GavinHuttley made their first contribution in #15
- @dependabot made their first contribution in #20
Full Changelog: https://github.com/iqtree/piqtree2/commits/v0.1.0