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<div class="title">ASSP.h</div> </div>
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<div class="fragment"><div class="line"><a name="l00001"></a><span class="lineno"> 1</span> <span class="comment">// Copyright (c) 2017-, California Institute of Technology ("Caltech"). U.S.</span></div>
<div class="line"><a name="l00002"></a><span class="lineno"> 2</span> <span class="comment">// Government sponsorship acknowledged.</span></div>
<div class="line"><a name="l00003"></a><span class="lineno"> 3</span> <span class="comment">// All rights reserved.</span></div>
<div class="line"><a name="l00004"></a><span class="lineno"> 4</span> <span class="comment">// </span></div>
<div class="line"><a name="l00005"></a><span class="lineno"> 5</span> <span class="comment">// Author(s):</span></div>
<div class="line"><a name="l00006"></a><span class="lineno"> 6</span> <span class="comment">// </span></div>
<div class="line"><a name="l00007"></a><span class="lineno"> 7</span> <span class="comment">// ----------------------------------------------------------------------------</span></div>
<div class="line"><a name="l00008"></a><span class="lineno"> 8</span> <span class="comment">// Author: Xiaoqing Wu</span></div>
<div class="line"><a name="l00009"></a><span class="lineno"> 9</span> </div>
<div class="line"><a name="l00010"></a><span class="lineno"> 10</span> <span class="preprocessor">#pragma once</span></div>
<div class="line"><a name="l00011"></a><span class="lineno"> 11</span> <span class="preprocessor"></span></div>
<div class="line"><a name="l00012"></a><span class="lineno"> 12</span> <span class="preprocessor">#include "Seed.h"</span></div>
<div class="line"><a name="l00013"></a><span class="lineno"> 13</span> <span class="preprocessor">#include "Point.h"</span></div>
<div class="line"><a name="l00014"></a><span class="lineno"> 14</span> <span class="preprocessor">#include "constants.h"</span></div>
<div class="line"><a name="l00015"></a><span class="lineno"> 15</span> <span class="preprocessor">#include "DataPatch.h"</span></div>
<div class="line"><a name="l00016"></a><span class="lineno"> 16</span> <span class="preprocessor">#include <complex></span></div>
<div class="line"><a name="l00017"></a><span class="lineno"> 17</span> <span class="preprocessor">#include <list></span></div>
<div class="line"><a name="l00018"></a><span class="lineno"> 18</span> <span class="preprocessor">#include <set></span></div>
<div class="line"><a name="l00019"></a><span class="lineno"> 19</span> <span class="preprocessor">#include <queue></span></div>
<div class="line"><a name="l00020"></a><span class="lineno"> 20</span> <span class="preprocessor">#include <vector></span></div>
<div class="line"><a name="l00021"></a><span class="lineno"> 21</span> </div>
<div class="line"><a name="l00022"></a><span class="lineno"> 22</span> <span class="keyword">using namespace </span>std;</div>
<div class="line"><a name="l00023"></a><span class="lineno"> 23</span> </div>
<div class="line"><a name="l00024"></a><span class="lineno"> 24</span> <span class="keyword">typedef</span> <span class="keywordtype">unsigned</span> <span class="keywordtype">char</span> uchar;</div>
<div class="line"><a name="l00025"></a><span class="lineno"> 25</span> <span class="keyword">typedef</span> <span class="keywordtype">unsigned</span> <span class="keywordtype">short</span> ushort;</div>
<div class="line"><a name="l00026"></a><span class="lineno"> 26</span> <span class="keyword">typedef</span> <span class="keywordtype">unsigned</span> <span class="keywordtype">int</span> uint;</div>
<div class="line"><a name="l00027"></a><span class="lineno"> 27</span> </div>
<div class="line"><a name="l00028"></a><span class="lineno"> 28</span> <span class="preprocessor">#define cost_scale 100</span></div>
<div class="line"><a name="l00029"></a><span class="lineno"> 29</span> <span class="preprocessor"></span><span class="preprocessor">#define no_data_value -10000.0</span></div>
<div class="line"><a name="l00030"></a><span class="lineno"> 30</span> <span class="preprocessor"></span></div>
<div class="line"><a name="l00031"></a><span class="lineno"> 31</span> <span class="preprocessor">#define noflow 0</span></div>
<div class="line"><a name="l00032"></a><span class="lineno"> 32</span> <span class="preprocessor"></span><span class="preprocessor">#define flow_up 1</span></div>
<div class="line"><a name="l00033"></a><span class="lineno"> 33</span> <span class="preprocessor"></span><span class="preprocessor">#define flow_down 2</span></div>
<div class="line"><a name="l00034"></a><span class="lineno"> 34</span> <span class="preprocessor"></span><span class="preprocessor">#define flow_left 3</span></div>
<div class="line"><a name="l00035"></a><span class="lineno"> 35</span> <span class="preprocessor"></span><span class="preprocessor">#define flow_right 4</span></div>
<div class="line"><a name="l00036"></a><span class="lineno"> 36</span> <span class="preprocessor"></span> </div>
<div class="line"><a name="l00037"></a><span class="lineno"> 37</span> <span class="preprocessor">#define edge_up 0x01</span></div>
<div class="line"><a name="l00038"></a><span class="lineno"> 38</span> <span class="preprocessor"></span><span class="preprocessor">#define edge_down 0x02</span></div>
<div class="line"><a name="l00039"></a><span class="lineno"> 39</span> <span class="preprocessor"></span><span class="preprocessor">#define edge_left 0x04</span></div>
<div class="line"><a name="l00040"></a><span class="lineno"> 40</span> <span class="preprocessor"></span><span class="preprocessor">#define edge_right 0x08</span></div>
<div class="line"><a name="l00041"></a><span class="lineno"> 41</span> <span class="preprocessor"></span><span class="preprocessor">#define edge_all 0x0F</span></div>
<div class="line"><a name="l00042"></a><span class="lineno"> 42</span> <span class="preprocessor"></span></div>
<div class="line"><a name="l00043"></a><span class="lineno"> 43</span>  </div>
<div class="line"><a name="l00044"></a><span class="lineno"> 44</span> <span class="preprocessor">#define flow_limit_per_arc 4</span></div>
<div class="line"><a name="l00045"></a><span class="lineno"> 45</span> <span class="preprocessor"></span></div>
<div class="line"><a name="l00046"></a><span class="lineno"><a class="line" href="structNode.html"> 46</a></span> <span class="keyword">struct </span><a class="code" href="structNode.html">Node</a> {</div>
<div class="line"><a name="l00047"></a><span class="lineno"> 47</span> <span class="comment">// uchar edge_flag; // First 4 bits for edge connections. The rest 4 bits reserved.</span></div>
<div class="line"><a name="l00048"></a><span class="lineno"> 48</span>  <span class="keywordtype">char</span> supply; <span class="comment">// 1: supply; -1: demand; 0: neutral.</span></div>
<div class="line"><a name="l00049"></a><span class="lineno"> 49</span> <span class="comment">// ushort rc; // right (pixel + 1) cost</span></div>
<div class="line"><a name="l00050"></a><span class="lineno"> 50</span> <span class="comment">// ushort dc; // down (line + 1) cost</span></div>
<div class="line"><a name="l00051"></a><span class="lineno"> 51</span>  uchar rc; <span class="comment">// right (pixel + 1) cost</span></div>
<div class="line"><a name="l00052"></a><span class="lineno"> 52</span>  uchar dc; <span class="comment">// down (line + 1) cost</span></div>
<div class="line"><a name="l00053"></a><span class="lineno"> 53</span> };</div>
<div class="line"><a name="l00054"></a><span class="lineno"> 54</span> </div>
<div class="line"><a name="l00055"></a><span class="lineno"> 55</span> </div>
<div class="line"><a name="l00056"></a><span class="lineno"> 56</span> </div>
<div class="line"><a name="l00057"></a><span class="lineno"><a class="line" href="structFlow.html"> 57</a></span> <span class="keyword">struct </span><a class="code" href="structFlow.html">Flow</a> {</div>
<div class="line"><a name="l00058"></a><span class="lineno"> 58</span>  <span class="comment">//ushort xstart;</span></div>
<div class="line"><a name="l00059"></a><span class="lineno"> 59</span>  <span class="comment">//ushort ystart;</span></div>
<div class="line"><a name="l00060"></a><span class="lineno"> 60</span>  <span class="keywordtype">int</span> xstart;</div>
<div class="line"><a name="l00061"></a><span class="lineno"> 61</span>  <span class="keywordtype">int</span> ystart;</div>
<div class="line"><a name="l00062"></a><span class="lineno"> 62</span>  vector<uchar> flowdir; <span class="comment">// flow directions</span></div>
<div class="line"><a name="l00063"></a><span class="lineno"> 63</span> };</div>
<div class="line"><a name="l00064"></a><span class="lineno"> 64</span>  </div>
<div class="line"><a name="l00065"></a><span class="lineno"><a class="line" href="structNodeFlow.html"> 65</a></span> <span class="keyword">struct </span><a class="code" href="structNodeFlow.html">NodeFlow</a> {</div>
<div class="line"><a name="l00066"></a><span class="lineno"> 66</span>  <span class="keywordtype">char</span> toRight;</div>
<div class="line"><a name="l00067"></a><span class="lineno"> 67</span>  <span class="keywordtype">char</span> toDown;</div>
<div class="line"><a name="l00068"></a><span class="lineno"> 68</span> };</div>
<div class="line"><a name="l00069"></a><span class="lineno"> 69</span> </div>
<div class="line"><a name="l00070"></a><span class="lineno"> 70</span> </div>
<div class="line"><a name="l00071"></a><span class="lineno"> 71</span> <span class="comment">// vector<Flow> solve_assp(DataPatch<Node> *node_patch);</span></div>
<div class="line"><a name="l00072"></a><span class="lineno"> 72</span> </div>
<div class="line"><a name="l00073"></a><span class="lineno"> 73</span> <a class="code" href="classDataPatch.html">DataPatch<NodeFlow></a> *solve(<a class="code" href="classDataPatch.html">DataPatch<Node></a> *node_patch);</div>
<div class="line"><a name="l00074"></a><span class="lineno"> 74</span> </div>
<div class="line"><a name="l00075"></a><span class="lineno"> 75</span> <a class="code" href="classDataPatch.html">DataPatch<Node></a> *make_node_patch(<span class="keywordtype">int</span> nr_lines, <span class="keywordtype">int</span> nr_pixels, <span class="keywordtype">float</span> **corr_data, <span class="keywordtype">float</span> **phase_data, <span class="keywordtype">double</span> qthresh = 0);</div>
<div class="line"><a name="l00076"></a><span class="lineno"> 76</span> <a class="code" href="classDataPatch.html">DataPatch<Node></a> *make_node_patch(<a class="code" href="classDataPatch.html">DataPatch<fcomplex></a> *int_patch, <span class="keywordtype">double</span> qthresh = 0);</div>
<div class="line"><a name="l00077"></a><span class="lineno"> 77</span> <span class="keywordtype">void</span> make_node_patch(<span class="keywordtype">char</span> *int_file, <span class="keywordtype">char</span> *corr_file, <span class="keywordtype">char</span> *amp_file, <span class="keywordtype">char</span> *layover_file,</div>
<div class="line"><a name="l00078"></a><span class="lineno"> 78</span>  <span class="keywordtype">int</span> start_line, <span class="keywordtype">int</span> nr_lines, <span class="keywordtype">int</span> nr_pixels, <span class="keywordtype">double</span> corr_th, <span class="keywordtype">double</span> phase_th, <span class="keywordtype">double</span> amp_th,</div>
<div class="line"><a name="l00079"></a><span class="lineno"> 79</span>  <a class="code" href="classDataPatch.html">DataPatch<Node></a> **node_patch, <a class="code" href="classDataPatch.html">DataPatch<float></a> **phase_patch, <span class="keywordtype">double</span> minimum_corr = 0.0,</div>
<div class="line"><a name="l00080"></a><span class="lineno"> 80</span>  <span class="keywordtype">double</span> good_corr = 0.5, <span class="keywordtype">double</span> const_phase_to_remove = 0.0, <span class="keywordtype">int</span> sq = 1);</div>
<div class="line"><a name="l00081"></a><span class="lineno"> 81</span> </div>
<div class="line"><a name="l00082"></a><span class="lineno"> 82</span> </div>
<div class="line"><a name="l00083"></a><span class="lineno"> 83</span> <span class="keywordtype">void</span> create_seeds(<a class="code" href="classDataPatch.html">DataPatch<NodeFlow></a> *flows_patch, <span class="keywordtype">int</span> minimum_nr_pixels, <span class="keywordtype">int</span>& nr_seeds, <a class="code" href="structSeed.html">Seed</a> **seeds); <span class="comment">// seeds only</span></div>
<div class="line"><a name="l00084"></a><span class="lineno"> 84</span> <a class="code" href="classDataPatch.html">DataPatch<char></a>* unwrap_adjust_seeds(<a class="code" href="classDataPatch.html">DataPatch<NodeFlow></a> *flows_patch, <span class="keywordtype">float</span> **phase_data, <span class="keywordtype">int</span> nr_seeds, <a class="code" href="structSeed.html">Seed</a> *seeds); </div>
<div class="line"><a name="l00085"></a><span class="lineno"> 85</span> <a class="code" href="classDataPatch.html">DataPatch<char></a>* unwrap_assp(<a class="code" href="classDataPatch.html">DataPatch<NodeFlow></a> *flows_patch, <span class="keywordtype">float</span> **phase_data, <span class="keywordtype">int</span> nr_seeds, <a class="code" href="structSeed.html">Seed</a> *seeds);</div>
<div class="line"><a name="l00086"></a><span class="lineno"> 86</span> </div>
<div class="line"><a name="l00087"></a><span class="lineno"> 87</span> </div>
<div class="line"><a name="l00088"></a><span class="lineno"> 88</span> <span class="comment">//void flood_fill(int line, int pixel, vector<USPoint>& workv, queue<USPoint>& workq, int nr_lines, int nr_pixels, int **region_map, Node **nodes, </span></div>
<div class="line"><a name="l00089"></a><span class="lineno"> 89</span> <span class="comment">// char **visit, uchar curr_weight_th, uchar lower_cost_th);</span></div>
<div class="line"><a name="l00090"></a><span class="lineno"> 90</span> <span class="comment">//void flood_fill(int line, int pixel, queue<USPoint>& workq, int nr_lines, int nr_pixels, int **region_map, char **visit);</span></div>
<div class="line"><a name="l00091"></a><span class="lineno"> 91</span> <span class="comment">//void flood_fill_residues(int line, int pixel, queue<USPoint>& workq, int nr_lines, int nr_pixels, int **region_map, char **visit);</span></div>
<div class="line"><a name="l00092"></a><span class="lineno"> 92</span> </div>
<div class="line"><a name="l00093"></a><span class="lineno"> 93</span> <a class="code" href="classDataPatch.html">DataPatch<int></a> * generate_regions(<a class="code" href="classDataPatch.html">DataPatch<NodeFlow></a> *flows_patch, <span class="keywordtype">int</span> nr_seeds, <a class="code" href="structSeed.html">Seed</a> *seeds);</div>
<div class="line"><a name="l00094"></a><span class="lineno"> 94</span> <span class="keywordtype">void</span> generate_regions(<a class="code" href="classDataPatch.html">DataPatch<NodeFlow></a> *flows_patch, <span class="keywordtype">int</span> nr_seeds, <a class="code" href="structSeed.html">Seed</a> *seeds, <span class="keywordtype">int</span> **region_map);</div>
<div class="ttc" id="structFlow_html"><div class="ttname"><a href="structFlow.html">Flow</a></div><div class="ttdef"><b>Definition:</b> ASSP.h:57</div></div>
<div class="ttc" id="classDataPatch_html"><div class="ttname"><a href="classDataPatch.html">DataPatch</a></div><div class="ttdef"><b>Definition:</b> DataPatch.h:28</div></div>
<div class="ttc" id="structNode_html"><div class="ttname"><a href="structNode.html">Node</a></div><div class="ttdef"><b>Definition:</b> ASSP.h:46</div></div>
<div class="ttc" id="structSeed_html"><div class="ttname"><a href="structSeed.html">Seed</a></div><div class="ttdef"><b>Definition:</b> Seed.h:12</div></div>
<div class="ttc" id="structNodeFlow_html"><div class="ttname"><a href="structNodeFlow.html">NodeFlow</a></div><div class="ttdef"><b>Definition:</b> ASSP.h:65</div></div>
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