README.md

ngsAMOVA

Genotype likelihood framework for Analysis of Molecular Variance with NGS data
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Table of Contents

1. About The Project
   • Built With
2. Getting Started
   • Prerequisites
   • Installation
3. Usage
4. Contact
5. How to cite

ngsAMOVA: [A]nalysis of [MO]lecular [VA]riance with NGS data

Installation

git clone https://github.com/isinaltinkaya/ngsAMOVA.git; cd ngsAMOVA; make

Prerequisites

Install dependencies

sudo apt-get install libz-dev liblzma-dev libbz2-dev libcurl4-openssl-dev g++ make

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Usage

For more examples, please refer to the Documentation

Input files

Metadata file

If -f/--formula is not defined, ngsAMOVA will assume input metadata file is ordered and all of its hierarchical levels will be used.

./ngsAMOVA --formula "Individuals ~ Regions/Populations"

Individuals,Regions,Populations
ind1,reg1,pop1
ind2,reg1,pop2
ind3,reg2,pop3
ind4,reg2,pop3
ind5,reg2,pop4

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How to cite

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