model_seg_csf_epi

Model repository for spinal cord csf segmentation on GRE-EPI data

Dependencies

• SCT
• ivadomed

Clone this repository

git clone https://github.com/ivadomed/model_seg_csf_epi.git

Get the data

• git@data.neuro.polymtl.ca:datasets/mni-bmpd

Example calls to get the data

git clone git@data.neuro.polymtl.ca:datasets/mni-bmpd
cd mni-bmpd
git annex get .
cd ..

Scripts

• BIDSify_csf_data.py - Used for formatting the data into BIDS format.