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EvanBeal authored Mar 29, 2022
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Repository for training and using contrast agnostic registration models based on the work done in [SynthMorph](https://arxiv.org/pdf/2004.10282.pdf). The contrast agnostic registration models may later be used in [IvadoMed’s pipeline](https://ivadomed.org/) or in [SCT](https://spinalcordtoolbox.com/) via `sct_register_multimodal`.

Registration pipelines (including preprocessing, registration, post processing, evaluation) have been developed for the registration of multimodal 3D MR images, focusing on the spinal cord. They provide easy-to-use, accurate and fast solution for multimodal 3D registration. A sketch of the [cascaded pipeline](#registration--evaluation-pipeline-for-large-displacements-two-steps-approach) is represented with these figures.
Registration pipelines (including preprocessing, registration, post processing, evaluation) have been developed for the registration of multimodal 3D MR images, focusing on the spinal cord. They provide easy-to-use, accurate and fast solution for multimodal 3D registration. A sketch of the [cascaded pipeline](#registration--evaluation-pipeline-for-large-displacements-two-steps-approach) is represented in the following figure.

<img width="1000" alt="pipe_description" src="https://user-images.githubusercontent.com/32447627/160001735-8b87e1bd-0ae8-4c30-b12c-5ea7f0ea3938.png">

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