Merge pull request #53 from ivadomed/jv/52_remove_MetricsReloaded_scr…

…ipts Remove `MetricsReloaded` scripts
ivadomed · Jun 7, 2024 · 74de4bd · 74de4bd
2 parents 1e72f5d + 29b08f3
commit 74de4bd
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diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml
@@ -34,11 +34,7 @@ jobs:
         run: |
           python -m pip install --upgrade pip
           pip install -r dataset_conversion/requirements.txt
-          git clone https://github.com/ivadomed/MetricsReloaded.git
-          cd MetricsReloaded
-          python -m pip install .
 
       - name: Run tests with unittest
         run: |
-          python -m unittest tests/test_convert_bids_to_nnUNetV2.py
-          python -m unittest tests/test_compute_metrics_reloaded.py
+          python -m unittest tests/test_convert_bids_to_nnUNetV2.py
diff --git a/README.md b/README.md
@@ -4,4 +4,3 @@ Repository containing utility scripts for handling various aspects in a DL model
 - Conversion to/from BIDS format to nnU-Net or other ecosystem-specific formats;
 - Quick-start guides (nnU-Net, ANIMA, MetricsReloaded)
 - Template for running inference on NifTI images (a list or dataset) or using nnUNet in `packaging/`
-- `compute_metrics/compute_metrics_reloaded.py` wrapper script to compute segmentation metrics using [MetricsReloaded](https://github.com/ivadomed/MetricsReloaded)
diff --git a/compute_metrics/compute_metrics_reloaded.py b/compute_metrics/compute_metrics_reloaded.py
diff --git a/quick_start_guides/MetricsReloaded_quick_start_guide.md b/quick_start_guides/MetricsReloaded_quick_start_guide.md