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Update to reflecct the ivadomed/MetricsReloaded fork
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valosekj committed Apr 16, 2024
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2 changes: 1 addition & 1 deletion compute_metrics/compute_metrics_reloaded.py
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"""
Compute MetricsReloaded metrics for segmentation tasks.
Details: https://github.com/Project-MONAI/MetricsReloaded/tree/main
Details: https://github.com/ivadomed/MetricsReloaded
Example usage (single reference-prediction pair):
python compute_metrics_reloaded.py
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9 changes: 6 additions & 3 deletions quick_start_guides/MetricsReloaded_quick_start_guide.md
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# MetricsReloaded quick-start guide

Useful links:
- [MetricsReloaded GitHub page](https://github.com/Project-MONAI/MetricsReloaded)
- [MetricsReloaded documentation](https://metricsreloaded.readthedocs.io/en/latest/)
- [MetricsReloaded publication](https://www.nature.com/articles/s41592-023-02151-z)
- [MetricsReloaded preprint](https://arxiv.org/pdf/2206.01653v5.pdf) - preprint contains more figures than the publication

## Installation

Official installation instructions are available [here](https://github.com/Project-MONAI/MetricsReloaded?tab=readme-ov-file#installation).
The installation instructions are available [here](https://github.com/ivadomed/MetricsReloaded?tab=readme-ov-file#installation).

> **Note**
> Note that we use an ivadomed fork.

> **Note**
> Always install MetricsReloaded inside a virtual environment.
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# Clone the repository
cd ~/code
git clone https://github.com/csudre/MetricsReloaded.git
git clone https://github.com/ivadomed/MetricsReloaded
cd MetricsReloaded
# Install the package
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