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Drawing for HaplotypeGraph #29

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shz9 opened this issue Jul 16, 2020 · 0 comments
Open

Drawing for HaplotypeGraph #29

shz9 opened this issue Jul 16, 2020 · 0 comments

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@shz9
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shz9 commented Jul 16, 2020

The draw method of the HaplotypeGraph class is currently broken.
We need a new method that properly represents the haplotypes and the individuals to whom those haplotypes belong. Issues with current representation:

  • Currently, nodes are laid out to minimize crossings, which leads to separating haplotypes from the same individual. Therefore, we need to figure out a layout that doesn't do that.
  • The method should accommodate various types of HaplotypeGraphs (e.g. autosomal, mitochondrial, etc.).
  • Ideally, this method should be moved to the Drawing script.
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