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Implement greedy climbing #6

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ivan-krukov opened this issue May 12, 2020 · 1 comment
Open

Implement greedy climbing #6

ivan-krukov opened this issue May 12, 2020 · 1 comment
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@ivan-krukov
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Single tree align...

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@ivan-krukov
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We want to have an agent-based climbing approach for aligning pedigrees and trees.

This should include matching of pedigree nodes to coalescent edges.
@ivan-krukov ivan-krukov added this to the Single tree alignment milestone May 19, 2020
@ivan-krukov ivan-krukov self-assigned this May 19, 2020
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I pushed a preliminary version in 11a4874. It doesn't quite return the correct alignment, and I think the issue is that it presently ignores timing info on the branches of the gene genealogy.

@ivan-krukov ivan-krukov mentioned this issue Jun 9, 2020
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