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insilico-perfusion

Installation

python setup.py install

Examples

Create and optimize a vessel network

python examples/createVascularization.py

alt text

Fig. 1. Showing how the vascular network evolves during optimization. The blue region mimics the necrotic core of a tumor, where the probability of vessel sprouting is reduced.

Run perfusion simulation on vessel network

python examples/calcPerfusion.py

Fig. 2. The vascular network used for the marker perfusion simulation. The blue region mimics a tumor with increased marker permeability.

Fig. 3. Showing how the concentration of an injected marker chamges over time in different parts of the tissue. left: The marker concentration only considering the plasma. center: The marker concentration in the interstitial space. right: The total marker concentration.